DOID:3908: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{DOID
|id=DOID:3908
|name=non-small cell lung carcinoma
|namespace=
|def=
|xref=
|is_a=DOID:3905
|synonym="Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_...") |
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|id=DOID:3908 | |id=DOID:3908 | ||
|name=non-small cell lung carcinoma | |name=non-small cell lung carcinoma | ||
|namespace= | |namespace=disease_ontology | ||
|def= | |def= | ||
|xref= | |xref=MSH:D002289;;NCI:C2926;;SNOMEDCT_2010_1_31:254637007;;UMLS_CUI:C0007131 | ||
|is_a=DOID:3905 | |is_a=DOID:3905 | ||
|synonym="Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_07_31:254637007];;"NSCLC" EXACT [NCI2004_11_17:C2926];;"NSCLC" EXACT [CSP2005:4005-0042] | |synonym="Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_07_31:254637007];;"NSCLC" EXACT [NCI2004_11_17:C2926];;"NSCLC" EXACT [CSP2005:4005-0042] | ||
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|part_of= | |part_of= | ||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |||
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Revision as of 14:00, 11 June 2012
| Name: | non-small cell lung carcinoma | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Xrefs: |
| ||
| Synonyms: |
"Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_07_31:254637007] "NSCLC" EXACT [NCI2004_11_17:C2926] "NSCLC" EXACT [CSP2005:4005-0042] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:3905(lung carcinoma) |
|---|
Children
| is a: | DOID:3910 (lung adenocarcinoma),DOID:4556 (lung large cell carcinoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10509-107D5 (large cell lung carcinoma cell line:IA-LM)
- 10595-108E1
- 10619-108G7
- 10692-109F8 (large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 10839-111E2 (large cell lung carcinoma cell line:NCI-H460)
Mouse (Mus musculus)
- 10509-107D5 (large cell lung carcinoma cell line:IA-LM)
- 10595-108E1
- 10619-108G7
- 10692-109F8 (large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 10839-111E2 (large cell lung carcinoma cell line:NCI-H460)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3908 (non-small cell lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.19e-53 | FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_f8448737c8ec2739731a1f31a8831942 | p@chr5:92526866..92526914, - |
| 2.19e-53 | FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_f8448737c8ec2739731a1f31a8831942 | p@chr13:70823810..70823813, + |
| 2.19e-53 | FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_f8448737c8ec2739731a1f31a8831942 | p@chr13:70823810..70823813, + |
| 2.19e-53 | FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_f8448737c8ec2739731a1f31a8831942 | p@chr5:92526866..92526914, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:138393225..138393257,+#_b5deded04545a234929b41f7ca36e34b | p@chr9:138393225..138393257, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:68735214..68735224,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:68735214..68735224, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:166575975..166575983,-#_b5deded04545a234929b41f7ca36e34b | p@chr6:166575975..166575983, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:188874798..188874820,+#_b5deded04545a234929b41f7ca36e34b | p1@ENST00000445072 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_b5deded04545a234929b41f7ca36e34b | p12@CLEC16A |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_b5deded04545a234929b41f7ca36e34b | p12@CPXM1 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_b5deded04545a234929b41f7ca36e34b | p12@CLEC16A |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_b5deded04545a234929b41f7ca36e34b | p9@CPXM1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:151169194..151169198,-#_b5deded04545a234929b41f7ca36e34b | p17@RHEB |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:158242968..158242975,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:158242968..158242975, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:26426173..26426176,+#_b5deded04545a234929b41f7ca36e34b | p@chr3:26426173..26426176, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:68735026..68735050,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:68735026..68735050, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:188856590..188856595,-#_b5deded04545a234929b41f7ca36e34b | p4@ENST00000414765 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:68735137..68735150,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:68735137..68735150, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr14:88452908..88452916,-#_b5deded04545a234929b41f7ca36e34b | p@chr14:88452908..88452916, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_b5deded04545a234929b41f7ca36e34b | p13@DNMBP |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:138060034..138060045,-#_b5deded04545a234929b41f7ca36e34b | p1@ENST00000411615, p1@ENST00000419220 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:68927028..68927036,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:68927028..68927036, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:63804973..63804980,+#_b5deded04545a234929b41f7ca36e34b | p3@C3orf49 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:115929667..115929677,+#_b5deded04545a234929b41f7ca36e34b | p@chr2:115929667..115929677, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_b5deded04545a234929b41f7ca36e34b | p@chr3:87647430..87647437, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:33886864..33886872,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:33886864..33886872, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr5:5558678..5558683,+#_b5deded04545a234929b41f7ca36e34b | p@chr5:5558678..5558683, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_b5deded04545a234929b41f7ca36e34b | p@chr14:36536932..36536937, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_b5deded04545a234929b41f7ca36e34b | p16@CPXM1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr21:11130568..11130575,+#_b5deded04545a234929b41f7ca36e34b | p@chr21:11130568..11130575, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:145434485..145434492,+#_b5deded04545a234929b41f7ca36e34b | p@chr6:145434485..145434492, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_b5deded04545a234929b41f7ca36e34b | p1@ENST00000430271 |
| 1.48e-40 | FFCP PHASE2:Hg19::chrX:105065622..105065627,+#_b5deded04545a234929b41f7ca36e34b | p@chrX:105065622..105065627, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:166582133..166582149,-#_b5deded04545a234929b41f7ca36e34b | p1@T |
| 1.48e-40 | FFCP PHASE2:Hg19::chr12:40426483..40426524,-#_b5deded04545a234929b41f7ca36e34b | p@chr12:40426483..40426524, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:189838995..189839000,-#_b5deded04545a234929b41f7ca36e34b | p31@LEPREL1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_b5deded04545a234929b41f7ca36e34b | p13@CPXM1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr12:75174802..75174809,+#_b5deded04545a234929b41f7ca36e34b | p@chr12:75174802..75174809, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:158225991..158225999,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:158225991..158225999, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr8:129431377..129431384,-#_b5deded04545a234929b41f7ca36e34b | p@chr8:129431377..129431384, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr14:88452908..88452916,-#_b5deded04545a234929b41f7ca36e34b | p@chr14:88452908..88452916, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:68735078..68735090,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:68735078..68735090, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr17:9716257..9716264,-#_b5deded04545a234929b41f7ca36e34b | p@chr17:9716257..9716264, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:68735214..68735224,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:68735214..68735224, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr17:9716257..9716264,-#_b5deded04545a234929b41f7ca36e34b | p@chr17:9716257..9716264, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr14:88452922..88452929,-#_b5deded04545a234929b41f7ca36e34b | p@chr14:88452922..88452929, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr15:91143571..91143582,+#_b5deded04545a234929b41f7ca36e34b | p@chr15:91143571..91143582, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr15:91143571..91143582,+#_b5deded04545a234929b41f7ca36e34b | p@chr15:91143571..91143582, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:33589897..33589917,+#_b5deded04545a234929b41f7ca36e34b | p@chr2:33589897..33589917, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:33886864..33886872,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:33886864..33886872, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:188857554..188857562,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:188857554..188857562, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr18:67563022..67563032,-#_b5deded04545a234929b41f7ca36e34b | p@chr18:67563022..67563032, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr18:67563022..67563032,-#_b5deded04545a234929b41f7ca36e34b | p@chr18:67563022..67563032, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:33886874..33886882,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:33886874..33886882, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:151169194..151169198,-#_b5deded04545a234929b41f7ca36e34b | p17@RHEB |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_b5deded04545a234929b41f7ca36e34b | p1@ENST00000418699, p1@ENST00000432330 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:33644021..33644058,+#_b5deded04545a234929b41f7ca36e34b | p@chr6:33644021..33644058, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_b5deded04545a234929b41f7ca36e34b | p@chr14:36536932..36536937, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr12:40426483..40426524,-#_b5deded04545a234929b41f7ca36e34b | p@chr12:40426483..40426524, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:68735026..68735050,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:68735026..68735050, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:234565260..234565271,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:234565260..234565271, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:138393225..138393257,+#_b5deded04545a234929b41f7ca36e34b | p@chr9:138393225..138393257, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:166575975..166575983,-#_b5deded04545a234929b41f7ca36e34b | p@chr6:166575975..166575983, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_b5deded04545a234929b41f7ca36e34b | p12@CPXM1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:158237237..158237241,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:158237237..158237241, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr12:75174802..75174809,+#_b5deded04545a234929b41f7ca36e34b | p@chr12:75174802..75174809, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:63804973..63804980,+#_b5deded04545a234929b41f7ca36e34b | p3@C3orf49 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:188856517..188856523,-#_b5deded04545a234929b41f7ca36e34b | p1@ENST00000414765 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:75145327..75145329,+#_b5deded04545a234929b41f7ca36e34b | p9@ENST00000435984 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_b5deded04545a234929b41f7ca36e34b | p14@DNMBP |
| 1.48e-40 | FFCP PHASE1:Hg19::chr14:88452922..88452929,-#_b5deded04545a234929b41f7ca36e34b | p@chr14:88452922..88452929, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:68735132..68735135,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:68735132..68735135, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:188857554..188857562,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:188857554..188857562, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:22113639..22113643,+#_b5deded04545a234929b41f7ca36e34b | p@chr6:22113639..22113643, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_b5deded04545a234929b41f7ca36e34b | p1@SSX5 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_b5deded04545a234929b41f7ca36e34b | p9@CPXM1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:33886874..33886882,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:33886874..33886882, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:109644678..109644725,+#_b5deded04545a234929b41f7ca36e34b | p@chr13:109644678..109644725, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:63805044..63805054,+#_b5deded04545a234929b41f7ca36e34b | p1@C3orf49 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:188861179..188861222,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:188861179..188861222, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:234565260..234565271,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:234565260..234565271, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:158225991..158225999,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:158225991..158225999, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:138060034..138060045,-#_b5deded04545a234929b41f7ca36e34b | p1@ENST00000411615, p1@ENST00000419220 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr16:3332452..3332454,+#_b5deded04545a234929b41f7ca36e34b | p@chr16:3332452..3332454, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr16:3332452..3332454,+#_b5deded04545a234929b41f7ca36e34b | p@chr16:3332452..3332454, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:188856517..188856523,-#_b5deded04545a234929b41f7ca36e34b | p1@ENST00000414765 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:68735078..68735090,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:68735078..68735090, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:115929667..115929677,+#_b5deded04545a234929b41f7ca36e34b | p@chr2:115929667..115929677, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:68927028..68927036,-#_b5deded04545a234929b41f7ca36e34b | p@chr1:68927028..68927036, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr5:5558678..5558683,+#_b5deded04545a234929b41f7ca36e34b | p@chr5:5558678..5558683, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:33589897..33589917,+#_b5deded04545a234929b41f7ca36e34b | p@chr2:33589897..33589917, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_b5deded04545a234929b41f7ca36e34b | p16@CPXM1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:158242968..158242975,+#_b5deded04545a234929b41f7ca36e34b | p@chr7:158242968..158242975, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr21:11130568..11130575,+#_b5deded04545a234929b41f7ca36e34b | p@chr21:11130568..11130575, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:145434485..145434492,+#_b5deded04545a234929b41f7ca36e34b | p@chr6:145434485..145434492, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:188856567..188856573,-#_b5deded04545a234929b41f7ca36e34b | p2@ENST00000414765 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:166582133..166582149,-#_b5deded04545a234929b41f7ca36e34b | p1@T |
| 1.48e-40 | FFCP PHASE1:Hg19::chrX:105065622..105065627,+#_b5deded04545a234929b41f7ca36e34b | p@chrX:105065622..105065627, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_b5deded04545a234929b41f7ca36e34b | p13@DNMBP |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:26426173..26426176,+#_b5deded04545a234929b41f7ca36e34b | p@chr3:26426173..26426176, + |
