UBERON:0000411: Difference between revisions
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|part_of= | |part_of=UBERON:0002021 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
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Revision as of 13:25, 27 June 2012
| Name: | visual cortex | ||
|---|---|---|---|
| Definition: | "Area of the occipital lobe concerned with vision." [MESH:A.08.186.211.730.885.213.571.735] | ||
| Xrefs: |
| ||
| Synonyms: |
"striate cortex" RELATED [MESH:A.08.186.211.730.885.213.571.735] "V1" RELATED [Wikipedia:Visual_cortex] | ||
| Comments: | Editor note: merge with primary visual cortex? FMA and BTO treat as distinct | ||
| Alt_id: | UBERON:BTO_0001857-FMA_242644 |
200px-Brodmann_areas_17_18_19.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002619(regional part of cerebral cortex) |
|---|---|
| part_of: | UBERON:0002021(occipital lobe) |
Children
| is a: | FF:10349-105D7 (visual cortex - wildtype),FF:10350-105D8 (visual cortex - Mecp knockout) |
|---|---|
| derives from: | FF:0011268 (mouse visual cortex from wildtype- neonate N15 sample),FF:0011269 (mouse visual cortex from wildtype- neonate N30 sample),FF:0011270 (mouse visual cortex from wildtype- neonate N60-70 sample),FF:0011271 (mouse visual cortex from Mecp knockout- neonate N15 sample),FF:0011272 (mouse visual cortex from Mecp knockout- neonate N30 sample),FF:0011273 (mouse visual cortex from Mecp knockout- neonate N60-70 sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 10235-104A1 (visual cortex - wildtype)
- 10236-104A2 (visual cortex - wildtype)
- 10237-104A3 (visual cortex - wildtype)
- 10238-104A4 (visual cortex - wildtype)
- 10239-104A5 (visual cortex - wildtype)
- 10240-104A6 (visual cortex - wildtype)
- 10241-104A7 (visual cortex - wildtype)
- 10242-104A8 (visual cortex - wildtype)
- 10243-104A9 (visual cortex - wildtype)
- 10244-104B1 (visual cortex - Mecp knockout)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000411 (visual cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:17100262..17100269,+#_28381004ddd65ccc3aa357593d659c1f | p@chr11:17100262..17100269, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr18:40430194..40430203,+#_28381004ddd65ccc3aa357593d659c1f | p@chr18:40430194..40430203, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr18:40430194..40430203,+#_28381004ddd65ccc3aa357593d659c1f | p@chr18:40430194..40430203, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr13:42849190..42849201,+#_28381004ddd65ccc3aa357593d659c1f | p@chr13:42849190..42849201, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr1:126502309..126502340,-#_28381004ddd65ccc3aa357593d659c1f | p@chr1:126502309..126502340, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr1:126502309..126502340,-#_28381004ddd65ccc3aa357593d659c1f | p@chr1:126502309..126502340, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr1:126400744..126400756,-#_28381004ddd65ccc3aa357593d659c1f | p@chr1:126400744..126400756, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:7223539..7223546,-#_28381004ddd65ccc3aa357593d659c1f | p@chr2:7223539..7223546, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr1:126404292..126404301,-#_28381004ddd65ccc3aa357593d659c1f | p@chr1:126404292..126404301, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr1:126404292..126404301,-#_28381004ddd65ccc3aa357593d659c1f | p@chr1:126404292..126404301, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:7223539..7223546,-#_28381004ddd65ccc3aa357593d659c1f | p@chr2:7223539..7223546, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:17100262..17100269,+#_28381004ddd65ccc3aa357593d659c1f | p@chr11:17100262..17100269, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr13:42849190..42849201,+#_28381004ddd65ccc3aa357593d659c1f | p@chr13:42849190..42849201, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr6:80020704..80020735,+#_28381004ddd65ccc3aa357593d659c1f | p@chr6:80020704..80020735, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr1:126400744..126400756,-#_28381004ddd65ccc3aa357593d659c1f | p@chr1:126400744..126400756, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr6:80020704..80020735,+#_28381004ddd65ccc3aa357593d659c1f | p@chr6:80020704..80020735, + |
| 3.9e-79 | FFCP PHASE1:Mm9::chr1:126717072..126717109,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126717072..126717109, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr1:126105041..126105050,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126105041..126105050, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr1:126400758..126400783,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126400758..126400783, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr8:17186907..17186917,-#_ea3f72708ce171e8187611568741f8af | p@chr8:17186907..17186917, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr1:126619902..126619921,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126619902..126619921, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr1:126105041..126105050,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126105041..126105050, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr7:99597472..99597476,+#_ea3f72708ce171e8187611568741f8af | p@chr7:99597472..99597476, + |
| 3.9e-79 | FFCP PHASE2:Mm9::chr7:90680238..90680241,-#_ea3f72708ce171e8187611568741f8af | p@chr7:90680238..90680241, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr1:126104837..126104853,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126104837..126104853, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr15:20450265..20450266,+#_ea3f72708ce171e8187611568741f8af | p@chr15:20450265..20450266, + |
| 3.9e-79 | FFCP PHASE1:Mm9::chr2:20291839..20291846,+#_ea3f72708ce171e8187611568741f8af | p@chr2:20291839..20291846, + |
| 3.9e-79 | FFCP PHASE2:Mm9::chr2:20291839..20291846,+#_ea3f72708ce171e8187611568741f8af | p@chr2:20291839..20291846, + |
| 3.9e-79 | FFCP PHASE2:Mm9::chr14:40201667..40201703,-#_ea3f72708ce171e8187611568741f8af | p@chr14:40201667..40201703, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr16:6986792..6986801,+#_ea3f72708ce171e8187611568741f8af | p@chr16:6986792..6986801, + |
| 3.9e-79 | FFCP PHASE2:Mm9::chr7:99597472..99597476,+#_ea3f72708ce171e8187611568741f8af | p@chr7:99597472..99597476, + |
| 3.9e-79 | FFCP PHASE2:Mm9::chr1:126203760..126203764,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126203760..126203764, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr1:126203760..126203764,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126203760..126203764, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr1:126652982..126652992,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126652982..126652992, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr4:76560610..76560659,-#_ea3f72708ce171e8187611568741f8af | p@chr4:76560610..76560659, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr4:77468821..77468823,-#_ea3f72708ce171e8187611568741f8af | p@chr4:77468821..77468823, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr14:40201667..40201703,-#_ea3f72708ce171e8187611568741f8af | p@chr14:40201667..40201703, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr4:77434471..77434475,-#_ea3f72708ce171e8187611568741f8af | p@chr4:77434471..77434475, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr4:76560610..76560659,-#_ea3f72708ce171e8187611568741f8af | p@chr4:76560610..76560659, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr4:77468821..77468823,-#_ea3f72708ce171e8187611568741f8af | p@chr4:77468821..77468823, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr1:126104837..126104853,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126104837..126104853, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr8:17186907..17186917,-#_ea3f72708ce171e8187611568741f8af | p@chr8:17186907..17186917, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr7:90680238..90680241,-#_ea3f72708ce171e8187611568741f8af | p@chr7:90680238..90680241, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr16:6986792..6986801,+#_ea3f72708ce171e8187611568741f8af | p@chr16:6986792..6986801, + |
| 3.9e-79 | FFCP PHASE2:Mm9::chr7:52430433..52430443,+#_ea3f72708ce171e8187611568741f8af | p@chr7:52430433..52430443, + |
| 3.9e-79 | FFCP PHASE2:Mm9::chr1:126717072..126717109,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126717072..126717109, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr15:20450265..20450266,+#_ea3f72708ce171e8187611568741f8af | p@chr15:20450265..20450266, + |
| 3.9e-79 | FFCP PHASE1:Mm9::chr4:77434471..77434475,-#_ea3f72708ce171e8187611568741f8af | p@chr4:77434471..77434475, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr7:52430433..52430443,+#_ea3f72708ce171e8187611568741f8af | p@chr7:52430433..52430443, + |
| 3.9e-79 | FFCP PHASE2:Mm9::chr1:126652982..126652992,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126652982..126652992, - |
| 3.9e-79 | FFCP PHASE2:Mm9::chr1:126619902..126619921,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126619902..126619921, - |
| 3.9e-79 | FFCP PHASE1:Mm9::chr1:126400758..126400783,-#_ea3f72708ce171e8187611568741f8af | p@chr1:126400758..126400783, - |
| 4.7e-79 | FFCP PHASE2:Mm9::chr1:126619952..126619959,-#_0032715cc9f03c61f3e5c653ef25184c | p@chr1:126619952..126619959, - |
| 4.7e-79 | FFCP PHASE1:Mm9::chr1:126619952..126619959,-#_0032715cc9f03c61f3e5c653ef25184c | p@chr1:126619952..126619959, - |
| 4.7e-79 | FFCP PHASE2:Mm9::chr9:37352150..37352163,-#_0032715cc9f03c61f3e5c653ef25184c | p@chr9:37352150..37352163, - |
| 4.7e-79 | FFCP PHASE1:Mm9::chr4:126885535..126885547,+#_0032715cc9f03c61f3e5c653ef25184c | p@chr4:126885535..126885547, + |
| 4.7e-79 | FFCP PHASE2:Mm9::chr4:126885535..126885547,+#_0032715cc9f03c61f3e5c653ef25184c | p@chr4:126885535..126885547, + |
| 4.7e-79 | FFCP PHASE1:Mm9::chr9:37352150..37352163,-#_0032715cc9f03c61f3e5c653ef25184c | p@chr9:37352150..37352163, - |
| 5.66e-79 | FFCP PHASE2:Mm9::chr1:126404318..126404329,-#_cd68e94da2b023c68ce71b2082225db7 | p@chr1:126404318..126404329, - |
| 5.66e-79 | FFCP PHASE2:Mm9::chr2:129870267..129870276,+#_cd68e94da2b023c68ce71b2082225db7 | p@chr2:129870267..129870276, + |
| 5.66e-79 | FFCP PHASE1:Mm9::chr1:126404318..126404329,-#_cd68e94da2b023c68ce71b2082225db7 | p@chr1:126404318..126404329, - |
| 5.66e-79 | FFCP PHASE1:Mm9::chr2:129870267..129870276,+#_cd68e94da2b023c68ce71b2082225db7 | p@chr2:129870267..129870276, + |
| 6.82e-79 | FFCP PHASE1:Mm9::chr18:40431328..40431331,+#_2551ba42d764e614995d3f490a140e5d | p@chr18:40431328..40431331, + |
| 6.82e-79 | FFCP PHASE2:Mm9::chr18:40431328..40431331,+#_2551ba42d764e614995d3f490a140e5d | p@chr18:40431328..40431331, + |
| 5.74e-78 | FFCP PHASE2:Mm9::chr6:102215690..102215693,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr6:102215690..102215693, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr7:64568462..64568466,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr7:64568462..64568466, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr9:37353524..37353532,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr9:37353524..37353532, + |
| 5.74e-78 | FFCP PHASE2:Mm9::chr7:98325289..98325298,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr7:98325289..98325298, + |
| 5.74e-78 | FFCP PHASE2:Mm9::chr15:20964798..20964802,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr15:20964798..20964802, + |
| 5.74e-78 | FFCP PHASE2:Mm9::chr4:138013853..138013861,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr4:138013853..138013861, + |
| 5.74e-78 | FFCP PHASE1:Mm9::chr1:156389511..156389544,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:156389511..156389544, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr1:126136825..126136836,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:126136825..126136836, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr2:42019112..42019120,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr2:42019112..42019120, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr16:75308220..75308224,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr16:75308220..75308224, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr1:126099259..126099261,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:126099259..126099261, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr1:126136825..126136836,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:126136825..126136836, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr6:110711128..110711143,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr6:110711128..110711143, + |
| 5.74e-78 | FFCP PHASE1:Mm9::chr15:20964798..20964802,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr15:20964798..20964802, + |
| 5.74e-78 | FFCP PHASE1:Mm9::chr9:37353524..37353532,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr9:37353524..37353532, + |
| 5.74e-78 | FFCP PHASE1:Mm9::chr7:64568462..64568466,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr7:64568462..64568466, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr16:75308220..75308224,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr16:75308220..75308224, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr4:76204951..76204975,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr4:76204951..76204975, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr4:138013853..138013861,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr4:138013853..138013861, + |
| 5.74e-78 | FFCP PHASE1:Mm9::chr7:98325289..98325298,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr7:98325289..98325298, + |
| 5.74e-78 | FFCP PHASE2:Mm9::chr4:76204951..76204975,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr4:76204951..76204975, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr10:109586641..109586671,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr10:109586641..109586671, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr10:109586641..109586671,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr10:109586641..109586671, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr1:126311174..126311222,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:126311174..126311222, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr2:62918160..62918168,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr2:62918160..62918168, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr1:156389511..156389544,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:156389511..156389544, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr1:126099259..126099261,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:126099259..126099261, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr2:62918160..62918168,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr2:62918160..62918168, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr1:126461420..126461468,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:126461420..126461468, - |
| 5.74e-78 | FFCP PHASE2:Mm9::chr2:42019112..42019120,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr2:42019112..42019120, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr6:102215690..102215693,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr6:102215690..102215693, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr1:126461420..126461468,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:126461420..126461468, - |
| 5.74e-78 | FFCP PHASE1:Mm9::chr6:110711128..110711143,+#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr6:110711128..110711143, + |
| 5.74e-78 | FFCP PHASE1:Mm9::chr1:126311174..126311222,-#_fd91f49c231c81b5f0b4bd2cd359038d | p@chr1:126311174..126311222, - |
| 6.62e-73 | FFCP PHASE1:Mm9::chr4:77421232..77421237,-#_96716259b1db4bee8be156d1763f1285 | p@chr4:77421232..77421237, - |
| 6.62e-73 | FFCP PHASE2:Mm9::chr1:126688121..126688168,-#_96716259b1db4bee8be156d1763f1285 | p@chr1:126688121..126688168, - |
