UBERON:0003059: Difference between revisions
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|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0007282 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0003077 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:32, 27 June 2012
| Name: | presomitic mesoderm | ||
|---|---|---|---|
| Definition: | "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a>" [ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"presumptive somite mesoderm" RELATED [] "PSM" RELATED [] "segmental plate" EXACT [] "somitogenic mesoderm" RELATED [] "unsegmented paraxial mesoderm" EXACT [UBERON:cjm] | ||
| Alt_id: | UBERON:XAO_0000057-ZFA_0000279 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0007282(presumptive segmental plate) |
| part_of: | UBERON:0003077(paraxial mesoderm) |
Children
| develops from: | UBERON:0002329 (somite) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003059 (presomitic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.24e-58 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_f2e11086ca10bfb6174e89f46111e5b9 | p@chrX:160838683..160838694, + |
| 5.24e-58 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_f2e11086ca10bfb6174e89f46111e5b9 | p@chrX:160838683..160838694, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_16cf9f251c1c57bf0da847655395fc58 | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_16cf9f251c1c57bf0da847655395fc58 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_16cf9f251c1c57bf0da847655395fc58 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_16cf9f251c1c57bf0da847655395fc58 | p@chr12:105433069..105433075, - |
| 1.47e-48 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_8c07e3e502785a76b17c6ad4da5e09fc | p@chrX:160838787..160838800, + |
| 1.47e-48 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_8c07e3e502785a76b17c6ad4da5e09fc | p@chrX:160838787..160838800, + |
| 1.58e-44 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_caaf15760ba38a4ce546a9275dfad131 | p8@ARHGAP22 |
| 1.58e-44 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_caaf15760ba38a4ce546a9275dfad131 | p8@ARHGAP22 |
| 8.42e-44 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_2f8fdd6bd2f23fb2e3db190e4e2c640d | p@chr11:81849982..81850000, + |
| 8.42e-44 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_2f8fdd6bd2f23fb2e3db190e4e2c640d | p@chr11:81849982..81850000, + |
| 9.2e-41 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_a5858d788597bec0730cd162f4a7c9ac | p@chr6:53359400..53359406, + |
| 9.2e-41 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_a5858d788597bec0730cd162f4a7c9ac | p@chr6:53359400..53359406, + |
| 1.15e-40 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_a7a24eb9d15b3831843c7b20e0ebfb66 | p@chr17:14813242..14813246, - |
| 1.15e-40 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_a7a24eb9d15b3831843c7b20e0ebfb66 | p@chr17:14813242..14813246, - |
| 2.26e-39 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_c2d5a9de8fc0c75137dd364f3b818dfa | p4@ARHGAP22 |
| 2.26e-39 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_c2d5a9de8fc0c75137dd364f3b818dfa | p4@ARHGAP22 |
| 2.88e-39 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_af53ce1caf5d4f7992abee8878a48cd5 | p@chr9:35685631..35685657, + |
| 2.88e-39 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_af53ce1caf5d4f7992abee8878a48cd5 | p@chr9:35685631..35685657, + |
| 3.7e-39 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_0be163541f44a17202b377da204da742 | p4@Gpr39 |
| 3.7e-39 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_0be163541f44a17202b377da204da742 | p4@Gpr39 |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_eac384e47b5631ae0baa1f09dd30577a | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_eac384e47b5631ae0baa1f09dd30577a | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_eac384e47b5631ae0baa1f09dd30577a | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_eac384e47b5631ae0baa1f09dd30577a | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_eac384e47b5631ae0baa1f09dd30577a | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_eac384e47b5631ae0baa1f09dd30577a | p@chrX:160840048..160840057, + |
| 1.14e-38 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_15359e7aa3f5dfea3a0f7fdc021a54cb | p2@SASH1 |
| 1.14e-38 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_15359e7aa3f5dfea3a0f7fdc021a54cb | p2@SASH1 |
| 1.34e-36 | FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_1c92a48d94f7d168a1b54717e682a729 | p3@ARHGAP22 |
| 1.34e-36 | FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_1c92a48d94f7d168a1b54717e682a729 | p3@ARHGAP22 |
| 1.46e-35 | FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_d354578b5a772a4946463c4bd8424eb6 | p2@RCN3 |
| 1.46e-35 | FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_d354578b5a772a4946463c4bd8424eb6 | p2@RCN3 |
| 3.31e-35 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_b488d1289a402c7605d03eb537cc6b37 | p11@Fam198b |
| 3.31e-35 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_b488d1289a402c7605d03eb537cc6b37 | p11@Fam198b |
| 3.69e-35 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_990f98e58d201d977de4aa1b084e6444 | p@chr1:127574253..127574264, + |
| 3.69e-35 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_990f98e58d201d977de4aa1b084e6444 | p@chr1:127574253..127574264, + |
| 5.09e-35 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_e9e4477c3be5ab720c922f9f333d51cc | p7@Gpr39 |
| 5.09e-35 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_e9e4477c3be5ab720c922f9f333d51cc | p7@Gpr39 |
| 5.98e-35 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_f578b5763413528b12b9cbd262813334 | p11@Gpr39 |
| 5.98e-35 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_f578b5763413528b12b9cbd262813334 | p11@Gpr39 |
| 7.03e-35 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_b2f568332c16477086da0a730511e333 | p@chrX:160839768..160839780, + |
| 7.03e-35 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_b2f568332c16477086da0a730511e333 | p@chrX:160839768..160839780, + |
| 9.95e-35 | FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_b58d234b97cda58dd20ab20fa249f398 | p@chr9:35685445..35685517, + |
| 9.95e-35 | FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_b58d234b97cda58dd20ab20fa249f398 | p@chr9:35685445..35685517, + |
| 1.33e-34 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_c04a62734d68952a8fe327a0325f9ebd | p8@Gpr39 |
| 1.33e-34 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_c04a62734d68952a8fe327a0325f9ebd | p8@Gpr39 |
| 1.89e-34 | FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_954169b314668e6cf33930435316d284 | p@chr9:35684475..35684520, + |
| 1.89e-34 | FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_954169b314668e6cf33930435316d284 | p@chr9:35684475..35684520, + |
| 4.48e-34 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_ad3b4b0fcdce1e9a3d0f4f5dca1a1c1d | p3@IFI27L2 |
| 4.48e-34 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_ad3b4b0fcdce1e9a3d0f4f5dca1a1c1d | p3@IFI27L2 |
| 5.0e-34 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_e9189c9b907fbfb9a66cd23148ab2933 | p2@LRRC17 |
| 5.0e-34 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_e9189c9b907fbfb9a66cd23148ab2933 | p2@LRRC17 |
| 2.06e-33 | FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_73f51c94d50aedc7d930c08201d2f7c5 | p@chr9:35689148..35689192, + |
| 2.06e-33 | FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_73f51c94d50aedc7d930c08201d2f7c5 | p@chr9:35689148..35689192, + |
| 7.56e-33 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_1ca3e842a173f23a346c5b1e59e66d08 | p1@LRRC17 |
| 7.56e-33 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_1ca3e842a173f23a346c5b1e59e66d08 | p1@LRRC17 |
| 1.21e-32 | FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_6433e708e059cb4b52b477fe9ed418a0 | p6@COL6A2 |
| 1.21e-32 | FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_6433e708e059cb4b52b477fe9ed418a0 | p6@COL6A2 |
| 2.74e-32 | FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_acaa17c59368236608eb0ba00ae4e9be | p2@COL6A2 |
| 2.74e-32 | FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_acaa17c59368236608eb0ba00ae4e9be | p2@COL6A2 |
| 3.94e-32 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_b3587ca55dec6f19dbee4d7265bdc55a | p@chr7:96658543..96658553, - |
| 3.94e-32 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_b3587ca55dec6f19dbee4d7265bdc55a | p@chr7:96658543..96658553, - |
| 5.83e-32 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_f81bc3aabd1a2591ad4e5e7caf6a31a2 | p@chr4:74703497..74703511, + |
| 5.83e-32 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_f81bc3aabd1a2591ad4e5e7caf6a31a2 | p@chr4:74703497..74703511, + |
| 9.0e-32 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_77c014de1ac030311213da3e049f3507 | p@chr2:134548872..134548879, - |
| 9.0e-32 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_77c014de1ac030311213da3e049f3507 | p@chr2:134548872..134548879, - |
| 9.7e-32 | FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_a2fd57a29142384f045bec046b7d1930 | p@chr9:35685273..35685313, + |
| 9.7e-32 | FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_a2fd57a29142384f045bec046b7d1930 | p@chr9:35685273..35685313, + |
| 1.33e-31 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_75c15ce5eccdfb7c41f0241228be0348 | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_75c15ce5eccdfb7c41f0241228be0348 | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_75c15ce5eccdfb7c41f0241228be0348 | p2@Il6 |
| 1.33e-31 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_75c15ce5eccdfb7c41f0241228be0348 | p2@Il6 |
| 1.59e-31 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_43eb515857562e689fd9ec25cc373ed4 | p@chr10:67598037..67598049, - |
| 1.59e-31 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_43eb515857562e689fd9ec25cc373ed4 | p@chr10:67598037..67598049, - |
| 2.72e-31 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_e3a130ac250e466f2e722f9feea4fff4 | p@chr2:65009852..65009866, - |
| 2.72e-31 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_e3a130ac250e466f2e722f9feea4fff4 | p@chr2:65009852..65009866, - |
| 2.8e-31 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_51433d1d79b88490b6ee2a66ef20b357 | p@chr18:52678391..52678395, - |
| 2.8e-31 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_51433d1d79b88490b6ee2a66ef20b357 | p@chr18:52678391..52678395, - |
| 7.65e-31 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_34156a47cda78b003d4929ee58a21e1f | p@chr6:91222095..91222107, + |
| 7.65e-31 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_34156a47cda78b003d4929ee58a21e1f | p@chr6:91222095..91222107, + |
| 9.72e-31 | FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_4347bc7c7cdb10ff571457620e4e7649 | p2@ELTD1 |
| 9.72e-31 | FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_4347bc7c7cdb10ff571457620e4e7649 | p2@ELTD1 |
| 1.01e-30 | FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_6d3b33ff7e5a0db8d55bc274ff05b86e | p@chr7:100773764..100773799, - |
| 1.01e-30 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_c88761af5d34075a84eab06751929458 | p9@Kctd10 |
| 1.01e-30 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_c88761af5d34075a84eab06751929458 | p9@Kctd10 |
| 1.01e-30 | FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_6d3b33ff7e5a0db8d55bc274ff05b86e | p@chr7:100773764..100773799, - |
| 1.17e-30 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_1967969f3518208a9362908a0af8c6a0 | p6@Gpr39 |
| 1.17e-30 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_1967969f3518208a9362908a0af8c6a0 | p6@Gpr39 |
| 1.26e-30 | FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_3f49744d867ab382ce8820777c8ae172 | p1@AK074416 |
| 1.26e-30 | FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_3f49744d867ab382ce8820777c8ae172 | p1@AK074416 |
| 1.4e-30 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_984280c55f41daa9ac7957d3bdee076e | p1@CU675118 |
| 1.4e-30 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_984280c55f41daa9ac7957d3bdee076e | p1@CU675118 |
| 1.8e-30 | FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_6c9dc1fb5b75decefa61c0634f5d4f9e | p8@COL6A2 |
| 1.8e-30 | FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_6c9dc1fb5b75decefa61c0634f5d4f9e | p8@COL6A2 |
| 2.01e-30 | FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_483d5b43b17ce503e580b47c8e3ba23d | p2@LTBP1 |
| 2.01e-30 | FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_483d5b43b17ce503e580b47c8e3ba23d | p2@LTBP1 |
| 3.87e-30 | FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_a36e624e49dc93e74544923e642a22f2 | p@chr21:47542827..47542859, - |
| 3.87e-30 | FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_a36e624e49dc93e74544923e642a22f2 | p@chr21:47542827..47542859, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
