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Coexpression cluster:C70: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007023!1.45e-37!115;UBERON:0004121!8.02e-20!169;UBERON:0000924!2.58e-19!173;UBERON:0006601!2.58e-19!173;UBERON:0000468!1.04e-18!659;UBERON:0000475!1.93e-18!365;UBERON:0000153!1.27e-17!129;UBERON:0007811!1.27e-17!129;UBERON:0001049!4.89e-17!57;UBERON:0005068!4.89e-17!57;UBERON:0006241!4.89e-17!57;UBERON:0007135!4.89e-17!57;UBERON:0000033!1.12e-16!123;UBERON:0000062!6.25e-15!511;UBERON:0001017!8.10e-15!82;UBERON:0002616!5.12e-14!59;UBERON:0005743!6.06e-14!86;UBERON:0003075!8.06e-14!86;UBERON:0007284!8.06e-14!86;UBERON:0002346!3.88e-13!90;UBERON:0000467!4.86e-13!625;UBERON:0003080!6.16e-13!42;UBERON:0000480!8.59e-13!626;UBERON:0002780!1.81e-12!41;UBERON:0001890!1.81e-12!41;UBERON:0006240!1.81e-12!41;UBERON:0000073!2.96e-12!94;UBERON:0001016!2.96e-12!94;UBERON:0000922!3.03e-12!612;UBERON:0000955!8.13e-12!69;UBERON:0006238!8.13e-12!69;UBERON:0003056!3.29e-11!61;UBERON:0001893!3.71e-11!34;UBERON:0002020!4.29e-11!34;UBERON:0003528!4.29e-11!34;UBERON:0002791!1.04e-10!33;UBERON:0002050!1.09e-10!605;UBERON:0005423!1.09e-10!605;UBERON:0001869!1.93e-10!32;UBERON:0000923!2.38e-10!604;UBERON:0005291!2.38e-10!604;UBERON:0006598!2.38e-10!604;UBERON:0002532!2.38e-10!604;UBERON:0000064!2.47e-09!219;UBERON:0000481!3.06e-09!347;UBERON:0002619!1.21e-08!22;UBERON:0000956!4.07e-08!25;UBERON:0000203!4.07e-08!25;UBERON:0001950!5.37e-08!20;UBERON:0003102!2.52e-07!95
|ontology_enrichment_uberon=UBERON:0007023!1.45e-37!115;UBERON:0004121!8.02e-20!169;UBERON:0000924!2.58e-19!173;UBERON:0006601!2.58e-19!173;UBERON:0000468!1.04e-18!659;UBERON:0000475!1.93e-18!365;UBERON:0000153!1.27e-17!129;UBERON:0007811!1.27e-17!129;UBERON:0001049!4.89e-17!57;UBERON:0005068!4.89e-17!57;UBERON:0006241!4.89e-17!57;UBERON:0007135!4.89e-17!57;UBERON:0000033!1.12e-16!123;UBERON:0000062!6.25e-15!511;UBERON:0001017!8.10e-15!82;UBERON:0002616!5.12e-14!59;UBERON:0005743!6.06e-14!86;UBERON:0003075!8.06e-14!86;UBERON:0007284!8.06e-14!86;UBERON:0002346!3.88e-13!90;UBERON:0000467!4.86e-13!625;UBERON:0003080!6.16e-13!42;UBERON:0000480!8.59e-13!626;UBERON:0002780!1.81e-12!41;UBERON:0001890!1.81e-12!41;UBERON:0006240!1.81e-12!41;UBERON:0000073!2.96e-12!94;UBERON:0001016!2.96e-12!94;UBERON:0000922!3.03e-12!612;UBERON:0000955!8.13e-12!69;UBERON:0006238!8.13e-12!69;UBERON:0003056!3.29e-11!61;UBERON:0001893!3.71e-11!34;UBERON:0002020!4.29e-11!34;UBERON:0003528!4.29e-11!34;UBERON:0002791!1.04e-10!33;UBERON:0002050!1.09e-10!605;UBERON:0005423!1.09e-10!605;UBERON:0001869!1.93e-10!32;UBERON:0000923!2.38e-10!604;UBERON:0005291!2.38e-10!604;UBERON:0006598!2.38e-10!604;UBERON:0002532!2.38e-10!604;UBERON:0000064!2.47e-09!219;UBERON:0000481!3.06e-09!347;UBERON:0002619!1.21e-08!22;UBERON:0000956!4.07e-08!25;UBERON:0000203!4.07e-08!25;UBERON:0001950!5.37e-08!20;UBERON:0003102!2.52e-07!95
|pathway_enrichment=7.11110300328319e-12;4.50132820107826e-09;7;89;Salivary secretion (KEGG):04970
}}
}}

Revision as of 15:05, 13 July 2012


Full id: C70_parotid_submaxillary_salivary_throat_trachea_aorta_tongue



Phase1 CAGE Peaks

Hg19::chr10:124320156..124320170,+p2@DMBT1
Hg19::chr10:124320195..124320216,+p3@DMBT1
Hg19::chr10:5541512..5541523,-p2@CALML5
Hg19::chr10:5541525..5541539,-p1@CALML5
Hg19::chr10:55624430..55624435,-p@chr10:55624430..55624435
-
Hg19::chr10:99569253..99569259,+p@chr10:99569253..99569259
+
Hg19::chr11:111114722..111114730,+p@chr11:111114722..111114730
+
Hg19::chr11:114549168..114549178,+p2@FAM55B
Hg19::chr11:18747734..18747737,-p1@IGSF22
Hg19::chr11:2476301..2476302,-p@chr11:2476301..2476302
-
Hg19::chr11:34654104..34654118,+p5@EHF
Hg19::chr11:69924116..69924138,+p3@ANO1
Hg19::chr11:69924156..69924167,+p9@ANO1
Hg19::chr12:11033561..11033572,+p@chr12:11033561..11033572
+
Hg19::chr12:11033611..11033616,+p@chr12:11033611..11033616
+
Hg19::chr12:11033624..11033630,+p@chr12:11033624..11033630
+
Hg19::chr12:11035682..11035705,-p4@PRR4
Hg19::chr12:11036844..11036861,-p1@PRH1
Hg19::chr12:11036998..11037006,-p6@PRH1
Hg19::chr12:11081828..11081843,+p1@PRH2
Hg19::chr12:11083291..11083303,-p@chr12:11083291..11083303
-
Hg19::chr12:11084832..11084846,+p@chr12:11084832..11084846
+
Hg19::chr12:11084887..11084890,-p@chr12:11084887..11084890
-
Hg19::chr12:11084910..11084920,-p@chr12:11084910..11084920
-
Hg19::chr12:11085174..11085180,+p@chr12:11085174..11085180
+
Hg19::chr12:11085389..11085397,+p@chr12:11085389..11085397
+
Hg19::chr12:11085407..11085416,+p@chr12:11085407..11085416
+
Hg19::chr12:11085966..11085971,+p@chr12:11085966..11085971
+
Hg19::chr12:11418847..11418863,+p@chr12:11418847..11418863
+
Hg19::chr12:11418889..11418902,+p@chr12:11418889..11418902
+
Hg19::chr12:11418891..11418899,-p@chr12:11418891..11418899
-
Hg19::chr12:11420140..11420141,-p@chr12:11420140..11420141
-
Hg19::chr12:11420158..11420171,-p@chr12:11420158..11420171
-
Hg19::chr12:11420194..11420201,+p@chr12:11420194..11420201
+
Hg19::chr12:11420228..11420239,-p@chr12:11420228..11420239
-
Hg19::chr12:11420245..11420259,-p@chr12:11420245..11420259
-
Hg19::chr12:11420272..11420292,+p@chr12:11420272..11420292
+
Hg19::chr12:11420275..11420317,-p@chr12:11420275..11420317
-
Hg19::chr12:11420345..11420359,+p@chr12:11420345..11420359
+
Hg19::chr12:11420370..11420387,-p@chr12:11420370..11420387
-
Hg19::chr12:11420395..11420401,-p@chr12:11420395..11420401
-
Hg19::chr12:11420650..11420676,-p@chr12:11420650..11420676
-
Hg19::chr12:11420877..11420903,-p@chr12:11420877..11420903
-
Hg19::chr12:11421003..11421035,+p@chr12:11421003..11421035
+
Hg19::chr12:11421037..11421054,-p@chr12:11421037..11421054
-
Hg19::chr12:11421554..11421570,+p@chr12:11421554..11421570
+
Hg19::chr12:11421586..11421606,-p2@PRB3
Hg19::chr12:11422630..11422648,-p1@PRB3
Hg19::chr12:11422801..11422812,-p4@PRB3
Hg19::chr12:11422834..11422844,-p3@PRB3
Hg19::chr12:11460043..11460048,+p@chr12:11460043..11460048
+
Hg19::chr12:11460065..11460082,+p@chr12:11460065..11460082
+
Hg19::chr12:11460066..11460069,-p@chr12:11460066..11460069
-
Hg19::chr12:11460094..11460104,-p@chr12:11460094..11460104
-
Hg19::chr12:11460103..11460107,+p@chr12:11460103..11460107
+
Hg19::chr12:11460117..11460126,-p@chr12:11460117..11460126
-
Hg19::chr12:11460130..11460137,-p@chr12:11460130..11460137
-
Hg19::chr12:11461145..11461156,+p@chr12:11461145..11461156
+
Hg19::chr12:11461169..11461178,+p@chr12:11461169..11461178
+
Hg19::chr12:11461188..11461196,-p@chr12:11461188..11461196
-
Hg19::chr12:11461203..11461212,-p@chr12:11461203..11461212
-
Hg19::chr12:11461215..11461224,-p@chr12:11461215..11461224
-
Hg19::chr12:11461234..11461250,-p@chr12:11461234..11461250
-
Hg19::chr12:11461261..11461270,-p@chr12:11461261..11461270
-
Hg19::chr12:11461279..11461288,-p@chr12:11461279..11461288
-
Hg19::chr12:11461288..11461303,+p@chr12:11461288..11461303
+
Hg19::chr12:11461318..11461353,-p@chr12:11461318..11461353
-
Hg19::chr12:11461323..11461331,+p@chr12:11461323..11461331
+
Hg19::chr12:11461360..11461361,-p@chr12:11461360..11461361
-
Hg19::chr12:11461374..11461409,+p@chr12:11461374..11461409
+
Hg19::chr12:11461406..11461438,-p@chr12:11461406..11461438
-
Hg19::chr12:11461445..11461450,-p@chr12:11461445..11461450
-
Hg19::chr12:11461489..11461528,+p@chr12:11461489..11461528
+
Hg19::chr12:11461523..11461561,-p@chr12:11461523..11461561
-
Hg19::chr12:11461556..11461561,+p@chr12:11461556..11461561
+
Hg19::chr12:11461567..11461574,+p@chr12:11461567..11461574
+
Hg19::chr12:11461583..11461606,-p@chr12:11461583..11461606
-
Hg19::chr12:11461769..11461793,-p@chr12:11461769..11461793
-
Hg19::chr12:11461798..11461802,-p@chr12:11461798..11461802
-
Hg19::chr12:11461834..11461842,-p@chr12:11461834..11461842
-
Hg19::chr12:11462291..11462306,+p@chr12:11462291..11462306
+
Hg19::chr12:11462323..11462347,-p@chr12:11462323..11462347
-
Hg19::chr12:11463289..11463293,-p6@PRB4
Hg19::chr12:11463302..11463306,-p3@PRB4
Hg19::chr12:11463324..11463340,-p2@PRB4
Hg19::chr12:11463353..11463372,-p1@PRB4
Hg19::chr12:11463456..11463473,-p5@PRB4
Hg19::chr12:11463525..11463554,-p4@PRB4
Hg19::chr12:11504757..11504776,+p@chr12:11504757..11504776
+
Hg19::chr12:11506208..11506238,+p@chr12:11506208..11506238
+
Hg19::chr12:11506231..11506258,-p@chr12:11506231..11506258
-
Hg19::chr12:11506364..11506397,+p@chr12:11506364..11506397
+
Hg19::chr12:11506400..11506433,-p@chr12:11506400..11506433
-
Hg19::chr12:11506471..11506494,-p@chr12:11506471..11506494
-
Hg19::chr12:11506532..11506559,-p@chr12:11506532..11506559
-
Hg19::chr12:11506590..11506602,-p@chr12:11506590..11506602
-
Hg19::chr12:11506643..11506654,+p@chr12:11506643..11506654
+
Hg19::chr12:11506657..11506679,-p@chr12:11506657..11506679
-
Hg19::chr12:11506721..11506729,-p@chr12:11506721..11506729
-
Hg19::chr12:11506721..11506745,+p@chr12:11506721..11506745
+
Hg19::chr12:11506735..11506742,-p@chr12:11506735..11506742
-
Hg19::chr12:11506765..11506778,+p@chr12:11506765..11506778
+
Hg19::chr12:11506768..11506777,-p@chr12:11506768..11506777
-
Hg19::chr12:11506782..11506785,-p@chr12:11506782..11506785
-
Hg19::chr12:11506793..11506803,-p@chr12:11506793..11506803
-
Hg19::chr12:11506888..11506910,+p@chr12:11506888..11506910
+
Hg19::chr12:11506903..11506911,-p@chr12:11506903..11506911
-
Hg19::chr12:11506917..11506930,-p@chr12:11506917..11506930
-
Hg19::chr12:11506935..11506940,-p@chr12:11506935..11506940
-
Hg19::chr12:11508649..11508686,-p2@PRB1
Hg19::chr12:11544471..11544496,+p@chr12:11544471..11544496
+
Hg19::chr12:11544505..11544549,-p@chr12:11544505..11544549
-
Hg19::chr12:11545967..11545972,-p@chr12:11545967..11545972
-
Hg19::chr12:11546098..11546121,+p@chr12:11546098..11546121
+
Hg19::chr12:11546139..11546158,-p3@PRB2
Hg19::chr12:11546285..11546311,+p@chr12:11546285..11546311
+
Hg19::chr12:11546322..11546343,-p1@PRB2
Hg19::chr12:11546479..11546495,+p@chr12:11546479..11546495
+
Hg19::chr12:11546512..11546529,-p2@PRB2
Hg19::chr12:11546581..11546615,+p@chr12:11546581..11546615
+
Hg19::chr12:11546616..11546637,-p5@PRB2
Hg19::chr12:11546832..11546849,+p@chr12:11546832..11546849
+
Hg19::chr12:11546872..11546887,+p@chr12:11546872..11546887
+
Hg19::chr12:11546877..11546885,-p4@PRB2
Hg19::chr12:11546891..11546902,-p8@PRB2
Hg19::chr12:11547447..11547455,-p@chr12:11547447..11547455
-
Hg19::chr12:11548496..11548505,-p10@PRB2
p1@PRB1
Hg19::chr12:19872772..19872786,+p@chr12:19872772..19872786
+
Hg19::chr12:52450779..52450791,+p51@NR4A1
Hg19::chr12:55224189..55224198,+p9@MUCL1
Hg19::chr12:55224312..55224339,+p6@MUCL1
Hg19::chr12:55224343..55224377,+p4@MUCL1
Hg19::chr12:55224381..55224392,+p7@MUCL1
Hg19::chr14:107062594..107062600,-p1@IGHV4-55
Hg19::chr14:87710658..87710659,-p@chr14:87710658..87710659
-
Hg19::chr15:36046765..36046769,+p@chr15:36046765..36046769
+
Hg19::chr15:63682381..63682392,+p1@ENST00000559821
Hg19::chr15:80254543..80254548,+p@chr15:80254543..80254548
+
Hg19::chr15:87737827..87737835,+p@chr15:87737827..87737835
+
Hg19::chr16:16196292..16196300,+p@chr16:16196292..16196300
+
Hg19::chr16:2533030..2533043,+p@chr16:2533030..2533043
+
Hg19::chr17:56315898..56315927,+p3@LPO
Hg19::chr17:56320348..56320371,+p@chr17:56320348..56320371
+
Hg19::chr17:68473195..68473200,-p@chr17:68473195..68473200
-
Hg19::chr17:80849228..80849258,+p@chr17:80849228..80849258
+
Hg19::chr18:20911174..20911182,-p13@TMEM241
Hg19::chr18:25719835..25719871,-p@chr18:25719835..25719871
-
Hg19::chr18:59327320..59327325,+p@chr18:59327320..59327325
+
Hg19::chr18:71497412..71497417,+p@chr18:71497412..71497417
+
Hg19::chr1:104103993..104104023,+p4@AMY2B
Hg19::chr1:104104405..104104433,+p1@AMY2B
Hg19::chr1:104113700..104113710,+p2@AMY2B
Hg19::chr1:104159271..104159273,+p@chr1:104159271..104159273
+
Hg19::chr1:104159538..104159544,+p1@AMY2A
Hg19::chr1:16543831..16543871,-p2@ANO7L1
Hg19::chr1:27431593..27431597,+p@chr1:27431593..27431597
+
Hg19::chr1:27652420..27652431,+p@chr1:27652420..27652431
+
Hg19::chr1:27652675..27652684,+p@chr1:27652675..27652684
+
Hg19::chr1:65506801..65506806,+p@chr1:65506801..65506806
+
Hg19::chr1:73249728..73249729,+p@chr1:73249728..73249729
+
Hg19::chr1:84873943..84873958,+p2@DNASE2B
Hg19::chr1:9005917..9005935,+p1@CA6
Hg19::chr1:9009379..9009420,-p@chr1:9009379..9009420
-
Hg19::chr1:9009432..9009443,+p@chr1:9009432..9009443
+
Hg19::chr1:9009454..9009492,-p@chr1:9009454..9009492
-
Hg19::chr1:9009469..9009476,+p@chr1:9009469..9009476
+
Hg19::chr1:9017232..9017246,+p@chr1:9017232..9017246
+
Hg19::chr1:9017236..9017243,-p@chr1:9017236..9017243
-
Hg19::chr1:9017270..9017274,-p@chr1:9017270..9017274
-
Hg19::chr1:9017276..9017317,+p@chr1:9017276..9017317
+
Hg19::chr1:9019023..9019038,+p@chr1:9019023..9019038
+
Hg19::chr1:9027764..9027769,+p@chr1:9027764..9027769
+
Hg19::chr20:10412881..10412883,+p@chr20:10412881..10412883
+
Hg19::chr20:23858235..23858249,-p@chr20:23858235..23858249
-
Hg19::chr20:23860113..23860123,+p@chr20:23860113..23860123
+
Hg19::chr20:25647072..25647079,+p@chr20:25647072..25647079
+
Hg19::chr20:3148921..3148942,-p3@ProSAPiP1
Hg19::chr20:31749574..31749588,+p3@BPIFA2
Hg19::chr20:31749597..31749606,+p10@BPIFA2
Hg19::chr20:38579074..38579083,-p@chr20:38579074..38579083
-
Hg19::chr22:36726420..36726440,-p@chr22:36726420..36726440
-
Hg19::chr22:37620034..37620039,-p@chr22:37620034..37620039
-
Hg19::chr2:168823560..168823568,-p@chr2:168823560..168823568
-
Hg19::chr2:168975262..168975272,-p@chr2:168975262..168975272
-
Hg19::chr2:207365716..207365733,+p@chr2:207365716..207365733
+
Hg19::chr2:235903480..235903488,+p21@SH3BP4
Hg19::chr2:235903499..235903512,+p17@SH3BP4
Hg19::chr2:64121005..64121007,+p@chr2:64121005..64121007
+
Hg19::chr3:109825435..109825440,-p@chr3:109825435..109825440
-
Hg19::chr3:12113249..12113261,+p@chr3:12113249..12113261
+
Hg19::chr3:141482175..141482178,-p@chr3:141482175..141482178
-
Hg19::chr3:193523505..193523508,-p@chr3:193523505..193523508
-
Hg19::chr3:306739..306742,-p@chr3:306739..306742
-
Hg19::chr3:42897816..42897822,+p@chr3:42897816..42897822
+
Hg19::chr3:46982400..46982405,+p@chr3:46982400..46982405
+
Hg19::chr3:55350938..55350945,+p@chr3:55350938..55350945
+
Hg19::chr3:58643295..58643304,-p8@FAM3D
Hg19::chr3:58643458..58643478,-p4@FAM3D
Hg19::chr3:58643483..58643499,-p1@FAM3D
Hg19::chr3:58643515..58643526,-p5@FAM3D
Hg19::chr3:58643556..58643567,-p7@FAM3D
Hg19::chr3:60043839..60043846,+p@chr3:60043839..60043846
+
Hg19::chr4:106092013..106092016,+p@chr4:106092013..106092016
+
Hg19::chr4:146782922..146782938,-p@chr4:146782922..146782938
-
Hg19::chr4:155178848..155178852,+p@chr4:155178848..155178852
+
Hg19::chr4:156244563..156244567,-p@chr4:156244563..156244567
-
Hg19::chr4:70852605..70852642,+p@chr4:70852605..70852642
+
Hg19::chr4:70866646..70866651,-p@chr4:70866646..70866651
-
Hg19::chr4:70866654..70866668,-p@chr4:70866654..70866668
-
Hg19::chr4:70867928..70867979,-p@chr4:70867928..70867979
-
Hg19::chr4:70893956..70893962,+p3@HTN3
Hg19::chr4:70894169..70894188,+p1@HTN3
Hg19::chr4:70894345..70894354,+p@chr4:70894345..70894354
+
Hg19::chr4:70898882..70898894,+p@chr4:70898882..70898894
+
Hg19::chr4:70898896..70898917,+p@chr4:70898896..70898917
+
Hg19::chr4:70902060..70902081,+p@chr4:70902060..70902081
+
Hg19::chr4:70902243..70902249,-p@chr4:70902243..70902249
-
Hg19::chr4:70916611..70916657,+p@chr4:70916611..70916657
+
Hg19::chr4:78231986..78232005,+p@chr4:78231986..78232005
+
Hg19::chr5:125674621..125674626,-p@chr5:125674621..125674626
-
Hg19::chr5:131707604..131707608,-p@chr5:131707604..131707608
-
Hg19::chr5:156806517..156806530,-p@chr5:156806517..156806530
-
Hg19::chr5:159266819..159266827,-p@chr5:159266819..159266827
-
Hg19::chr5:34043310..34043325,-p1@C1QTNF3
Hg19::chr5:34043331..34043343,-p2@C1QTNF3
Hg19::chr5:52450586..52450589,-p@chr5:52450586..52450589
-
Hg19::chr5:59784072..59784083,+p4@PART1
Hg19::chr5:59784151..59784164,+p2@PART1
Hg19::chr6:143061489..143061496,-p@chr6:143061489..143061496
-
Hg19::chr6:168151982..168152000,+p@chr6:168151982..168152000
+
Hg19::chr6:89001385..89001386,+p@chr6:89001385..89001386
+
Hg19::chr6:99243504..99243506,+p@chr6:99243504..99243506
+
Hg19::chr7:109641728..109641729,-p@chr7:109641728..109641729
-
Hg19::chr7:133817277..133817278,-p@chr7:133817277..133817278
-
Hg19::chr7:14028488..14028516,-p2@ETV1
Hg19::chr7:14028526..14028538,-p11@ETV1
Hg19::chr7:152549181..152549213,+p@chr7:152549181..152549213
+
Hg19::chr7:16031005..16031018,-p@chr7:16031005..16031018
-
Hg19::chr7:16505146..16505160,-p4@SOSTDC1
Hg19::chr7:16505162..16505173,-p5@SOSTDC1
Hg19::chr7:18832834..18832859,+p18@HDAC9
Hg19::chr7:7529359..7529406,-p@chr7:7529359..7529406
-
Hg19::chr7:84940118..84940122,+p@chr7:84940118..84940122
+
Hg19::chr7:99573648..99573659,-p2@AZGP1
Hg19::chr8:140213621..140213625,-p@chr8:140213621..140213625
-
Hg19::chr8:26443771..26443778,-p@chr8:26443771..26443778
-
Hg19::chr8:50037424..50037430,+p@chr8:50037424..50037430
+
Hg19::chr8:63858336..63858340,+p@chr8:63858336..63858340
+
Hg19::chr9:112970436..112970458,-p2@C9orf152
Hg19::chr9:3971778..3971783,+p@chr9:3971778..3971783
+
Hg19::chr9:3971860..3971870,+p@chr9:3971860..3971870
+
Hg19::chrX:129565220..129565223,+p@chrX:129565220..129565223
+
Hg19::chrX:32229061..32229062,-p@chrX:32229061..32229062
-
Hg19::chrX:53171146..53171174,-p@chrX:53171146..53171174
-
Hg19::chrX:53171462..53171470,-p@chrX:53171462..53171470
-
Hg19::chrX:98177758..98177763,+p@chrX:98177758..98177763
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
7.11110300328319e-124.50132820107826e-09789Salivary secretion (KEGG):04970



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016160amylase activity0.00022124418135433
GO:0004556alpha-amylase activity0.00022124418135433
GO:0030855epithelial cell differentiation0.0304966580906272
GO:0030670phagocytic vesicle membrane0.0334073818158868
GO:0043152induction of bacterial agglutination0.0334073818158868
GO:0031404chloride ion binding0.0334073818158868
GO:0043168anion binding0.0334073818158868
GO:0002009morphogenesis of an epithelium0.0334073818158868
GO:0019731antibacterial humoral response0.0334073818158868
GO:0016889endodeoxyribonuclease activity, producing 3'-phosphomonoesters0.0334073818158868
GO:0046676negative regulation of insulin secretion0.0334073818158868
GO:0004531deoxyribonuclease II activity0.0334073818158868
GO:0045335phagocytic vesicle0.0394176904241146
GO:0019730antimicrobial humoral response0.0394176904241146
GO:0042742defense response to bacterium0.0394176904241146
GO:0007586digestion0.0394176904241146
GO:0009617response to bacterium0.0460006060396343



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
adult organism1.45e-37115
ectoderm-derived structure8.02e-20169
ectoderm2.58e-19173
presumptive ectoderm2.58e-19173
multi-cellular organism1.04e-18659
organism subdivision1.93e-18365
anterior region of body1.27e-17129
craniocervical region1.27e-17129
neural tube4.89e-1757
neural rod4.89e-1757
future spinal cord4.89e-1757
neural keel4.89e-1757
head1.12e-16123
organ6.25e-15511
central nervous system8.10e-1582
regional part of brain5.12e-1459
neural plate8.06e-1486
presumptive neural plate8.06e-1486
neurectoderm3.88e-1390
anatomical system4.86e-13625
anterior neural tube6.16e-1342
anatomical group8.59e-13626
regional part of forebrain1.81e-1241
forebrain1.81e-1241
future forebrain1.81e-1241
regional part of nervous system2.96e-1294
nervous system2.96e-1294
embryo3.03e-12612
brain8.13e-1269
future brain8.13e-1269
pre-chordal neural plate3.29e-1161
telencephalon3.71e-1134
gray matter4.29e-1134
brain grey matter4.29e-1134
regional part of telencephalon1.04e-1033
embryonic structure1.09e-10605
developing anatomical structure1.09e-10605
cerebral hemisphere1.93e-1032
germ layer2.38e-10604
embryonic tissue2.38e-10604
presumptive structure2.38e-10604
epiblast (generic)2.38e-10604
organ part2.47e-09219
multi-tissue structure3.06e-09347
regional part of cerebral cortex1.21e-0822
cerebral cortex4.07e-0825
pallium4.07e-0825
neocortex5.37e-0820
surface structure2.52e-0795


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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