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MacroAPE 1083:PTF1A f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.0918367346938798;4.642857142857141;1.1734693877551;2.0918367346938798!2;4.3877551020408205;0.0;3.7755102040816304;1.83673469387755!3;1.836...")
 
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4-107G3;0.930949!10429-106D6;0.193336!10464-106H5;0.182149!10827-111C8;0.409009!10789-110H6;0.328964!10828-111C9;0.469159!10788-110H5;0.804783!10792-110H9;0.697421!10765-110E9;0.561268!10829-111D1;0.264012!10830-111D2;0.529372!10831-111D3;0.375624!10832-111D4;0.303761!10833-111D5;0.257628!10764-110E8;0.192085!10770-110F5;0.348325!10399-106A3;0.23714!10400-106A4;0.0920804!10405-106A9;0.0750535!10834-111D6;0.0779612!10835-111D7;0.55876!10836-111D8;0.0308619!10837-111D9;0.322374!10699-109G6;0.480707!10802-111A1;0.113436!10796-110I4;0.221688!10010-101C1;0.561451!10810-111A9;0.142593!10421-106C7;0.0879203!10708-109H6;0.614968!12235-129G3;0.188712!12236-129G4;0.482329!12237-129G5;0.708859!10167-103B5;0.401892!10151-102I7;0.0102133!10428-106D5;0.00677251!10795-110I3;0.659164!10805-111A4;0.176215!10052-101G7;0.725643!10189-103D9;0.149548!10589-108D4;0.00443617!10425-106D2;0.435895!10427-106D4;0.0911719!10702-109G9;0.992677!10432-106D9;0.0975183!10496-107C1;0.60119!10718-109I7;0.208901!10011-101C2;0.0778736!10053-101G8;0.0755381!10686-109F2;0.787762!10084-102B3;0.499103!10012-101C3;0.0105544!10085-102B4;0.0115645!10482-107A5;0.0834357!10419-106C5;0.859726!10080-102A8;0.321805!10760-110E4;0.468345!10709-109H7;0.835191!10710-109H8;0.920187!10703-109H1;0.998621!10719-109I8;0.690798!10642-109A3;0.561787!10177-103C6;0.262339!10164-103B2;0.0285173!10173-103C2;0.0256358!10166-103B4;0.264448!10083-102B2;0.127307!10188-103D8;0.0823667!10552-107I3;0.00205148!10553-107I4;0.220751!10013-101C4;0.629574!10536-107G5;0.0421899!10618-108G6;0.775319!10423-106C9;0.348663!10785-110H2;0.474978!12238-129G6;0.46182!12239-129G7;0.658835!12240-129G8;0.362885!10416-106C2;0.264638!10801-110I9;0.496765!10766-110F1;0.115727!10824-111C5;0.242002!10825-111C6;0.0323289!10826-111C7;0.020386!10454-106G4;0.0184!10409-106B4;0.0903388!10638-108I8;0.254153!10636-108I6;0.420754!10513-107D9;0.808398!10420-106C6;0.291918!10082-102B1;0.209277!10014-101C5;0.0846151!10070-101I7;0.00989454!10452-106G2;0.00712259!10453-106G3;0.0487526!10449-106F8;0.0523409!10042-101F6;0.0355791!10069-101I6;0.0263385!10193-103E4;0.0381699!10631-108I1;0.0106572!10438-106E6;0.754967!10488-107B2;0.732038!10196-103E7;0.444809!10071-101I8;0.0131511!10071-101I8;0.0193496!10041-101F5;0.0223967!10451-106G1;0.160627!10450-106F9;0.344701!10604-108F1;0.123516!10605-108F2;0.232305!10606-108F3;0.216483!10603-108E9;0.363526!10497-107C2;0.0774319!10448-106F7;0.721253!10643-109A4;0.0275235!10426-106D3;0.175157!10431-106D8;0.588348!10197-103E8;0.463583!10443-106F2;0.00273561!10815-111B5;0.389195!10816-111B6;0.152674!10817-111B7;0.217125!10015-101C6;0.138207!10410-106B5;0.00982897!10054-101G9;0.977996!10758-110E2;0.00518325!10711-109H9;0.341624!10040-101F4;0.160918!10470-106I2;0.00841779!10415-106C1;0.991472!10198-103E9;0.729598!10614-108G2;0.0338456!10612-108F9;0.554858!10549-107H9;0.379324!10615-108G3;0.0289567!10487-107B1;0.874419!10433-106E1;0.923609!10688-109F4;0.793575!10444-106F3;0.597399!10444-106F3;0.197551!10485-107A8;0.198224!10413-106B8;0.0641814!10175-103C4;0.135472!10161-103A8;0.0461493!12131-128D7;0.0201166!10624-108H3;0.346341!10712-109I1;0.450701!10205-103F7;0.381644!10206-103F8;0.177834!10207-103F9;0.1001!10050-101G5;0.663632!10051-101G6;0.0545352!10016-101C7;0.300183!10046-101G1;0.162121!10778-110G4;0.310027!10633-108I3;0.256773!10818-111B8;0.955517!10819-111B9;0.110757!10820-111C1;0.142894!10484-107A7;0.139953!10808-111A7;0.0678626!10169-103B7;0.827319!10153-102I9;0.0204321!13425-144D5;0.00751111!13433-144E4;0.307844!13437-144E8;0.627877!11904-125F5;0.946357!11905-125F6;0.588233!10039-101F3;0.914184!10791-110H8;0.00782164!10017-101C8;0.254944!10045-101F9;0.051469!10509-107D5;0.0435749!10839-111E2;0.81309!10692-109F8;0.718928!10079-102A7;0.984674!10078-102A6;0.0361516!10721-110A1;0.205347!10569-108B2;0.652585!10570-108B3;0.609135!10571-108B4;0.406952!10647-109A8;0.415026!10752-110D5;0.398161!10782-110G8;0.431311!10726-110A6;0.0621262!10018-101C9;0.188844!10086-102B5;0.18607!10182-103D2;0.378092!10165-103B3;0.0289632!10499-107C4;0.0162409!10408-106B3;0.450519!10019-101D1;0.287172!10068-101I5;0.0452411!10075-102A3;0.00950477!10077-102A5;0.0217618!10727-110A7;0.222356!10775-110G1;0.48514!10412-106B7;0.112245!12231-129F8;0.0708338!12232-129F9;0.878397!12233-129G1;0.970919!12234-129G2;0.987632!10414-106B9;0.690873!10170-103B8;0.365454!10183-103D3;0.039301!10150-102I6;0.0133876!10174-103C3;0.00938941!10155-103A2;0.105738!10038-101F2;0.0110759!10838-111E1;0.00959066!10759-110E3;0.527909!10514-107E1;0.448922!10465-106H6;0.225809!10691-109F7;0.473391!10843-111E6;0.892305!10844-111E7;0.191997!11747-123G1;0.788412!11748-123G2;0.0165127!11749-123G3;0.0205913!11750-123G4;0.420756!11751-123G5;0.856447!11840-124H4;0.988145!11752-123G6;0.480338!11753-123G7;0.362029!11754-123G8;0.0942358!11755-123G9;0.211691!11756-123H1;0.162812!11833-124G6;0.241008!11760-123H5;0.018503!11836-124G9;0.10187!11758-123H3;0.669268!11835-124G8;0.41978!11762-123H7;0.318422!11838-124H2;0.178121!11757-123H2;0.26269!11759-123H4;0.576833!11761-123H6;0.173557!11842-124H6;0.478946!11837-124H1;0.507452!10568-108B1;0.566486!13230-141I8;0.508774!13231-141I9;0.80397!10696-109G3;0.724915!10493-107B7;0.904958!10494-107B8;0.0866669!10850-111F4;0.164089!10851-111F5;0.97598!10852-111F6;0.143902!10853-111F7;0.0394629!10854-111F8;0.119501!10855-111F9;0.129056!10856-111G1;0.343684!10847-111F1;0.320555!10846-111E9;0.517684!10848-111F2;0.766865!10845-111E8;0.522994!10857-111G2;0.564057!10858-111G3;0.0344817!10156-103A3;0.172015!11901-125F2;0.00834723!11902-125F3;0.683139!11903-125F4;0.727915!10689-109F5;0.82113!10648-109A9;0.0906635!10784-110H1;0.376182!10744-110C6;0.577598!10772-110F7;0.612397!10474-106I6;0.238442!10600-108E6;0.93533!10684-109E9;0.00364214!12226-129F3;0.00961317!12227-129F4;0.26547!10508-107D4;0.0986236!10539-107G8;0.196035!10607-108F4;0.255773!10555-107I6;0.151083!10774-110F9;0.29773!10637-108I7;0.258548!10663-109C6;0.491482!10728-110A8;0.798519!10729-110A9;0.492541!10430-106D7;0.451!10730-110B1;0.319376!10813-111B3;0.645918!10812-111B2;0.645445!10037-101F1;0.070173!10172-103C1;0.0131771!10163-103B1;0.027865!10076-102A4;0.00691591!10073-102A1;0.00595997!10036-101E9;0.0986158!10195-103E6;0.0144272!10277-104E7;0.00568011!10434-106E2;0.0282705!10550-107I1;0.855583!10545-107H5;0.158667!10544-107H4;0.314187!10704-109H2;0.452989!10510-107D6;0.0301991!10558-107I9;0.469146!10020-101D2;0.256482!10732-110B3;0.123631!10049-101G4;0.149394!10698-109G5;0.0256211!10437-106E5;0.256086!10417-106C3;0.992428!10035-101E8;0.193632!10171-103B9;0.00935893!10157-103A4;0.0249539!10034-101E7;0.00926628!10072-101I9;0.0121492!10199-103F1;0.0792488!10200-103F2;0.0483929!10697-109G4;0.00159102!10723-110A3;0.368161!10179-103C8;0.00608872!10160-103A7;0.0672882!10180-103C9;0.032583!10162-103A9;0.00567161!10021-101D3;0.0149602!10840-111E3;0.00437407!10706-109H4;0.986827!10033-101E6;0.493473!10032-101E5;0.0220094!10490-107B4;0.011157!10439-106E7;0.3262!10022-101D4;0.197074!10176-103C5;0.0486664!10469-106I1;0.0644381!10067-101I4;0.829793!10411-106B6;0.0180717!10471-106I3;0.566384!10030-101E3;0.456877!10475-106I7;0.0335638!10787-110H4;0.18573!10477-106I9;0.49517!10695-109G2;0.493793!11771-123I7;0.391084!11772-123I8;0.44635!11773-123I9;0.751757!10093-102C3;0.508702!10442-106F1;0.0295723!10442-106F1;0.167299!10201-103F3;0.153608!10639-108I9;0.00115307!11843-124H7;0.470993!11841-124H5;0.531609!10693-109F9;0.171368!10436-106E4;0.898688!10483-107A6;0.516703!10282-104F3;0.684625!10023-101D5;0.00747941!10066-101I3;0.0466114!10065-101I2;0.0562937!10800-110I8;0.0116032!10610-108F7;0.259284!10841-111E4;0.126434!10541-107H1;0.686277!10842-111E5;0.516125!10562-108A4;0.673496!10024-101D6;0.0185788!10064-101I1;0.0284274!10609-108F6;0.0982059!10048-101G3;0.416964!10781-110G7;0.453408!10181-103D1;0.755343!10159-103A6;0.0223643!10056-101H2;0.0158222!10737-110B8;0.0135781!10025-101D7;0.302641!10044-101F8;0.164208!10424-106D1;0.0101601!10463-106H4;0.494218!10616-108G4;0.7939!10486-107A9;0.103707!10062-101H8;0.202556!10202-103F4;0.0531359!10158-103A5;0.00394105!10441-106E9;0.0348973!10031-101E4;0.85505!10063-101H9;0.00991294!10063-101H9;0.046227!11763-123H8;0.00140128!11765-123I1;0.138572!11768-123I4;0.434957!10807-111A6;0.0481876!10790-110H7;0.00278317!10798-110I6;0.039739!10786-110H3;0.216074!10591-108D6;0.0619181!10593-108D8;0.30781!10590-108D5;0.830675!10026-101D8;0.0659067!10096-102C6;0.174446!10168-103B6;0.903817!10154-103A1;0.0643715!10209-103G2;0.022275!10061-101H7;0.000374738!10027-101D9;0.00259735!10043-101F7;0.440133!10783-110G9;0.00891253!10028-101E1;0.80191!10060-101H6;0.0251968!10203-103F5;0.0599243!10059-101H5;0.00113445!10047-101G2;0.00301089!10029-101E2;0.000712268!10058-101H4;0.0102722!10418-106C4;0.00645341!10492-107B6;0.674188!10694-109G1;0.220128!10797-110I5;0.920115!10057-101H3;0.191979!10100-102D1;0.0227755!10055-101H1;0.0474501!10204-103F6;0.107221!10191-103E2;0.062316!10563-108A5;0.0099687
|name=PTF1A_f1
|name=PTF1A_f1
|tomtom_result=NHLH1#MA0048.1;-9;0.000212827;0.101306;0.138069;12;CAGGAAACAGAACAGCTGTCC;ACGCAGCTGCGC;-!twi#MA0249.1;-9;0.000291758;0.138877;0.138069;12;CAGGAAACAGAACAGCTGTCC;CAACATATGCGA;-!sna#MA0086.1;-12;0.00100867;0.480126;0.22944;6;CAGGAAACAGAACAGCTGTCC;CAGGTG;+!Myf#MA0055.1;-6;0.00292616;1.39285;0.395643;12;CAGGAAACAGAACAGCTGTCC;CAGCAGCTGCTG;+!TAL1::TCF3#MA0091.1;-8;0.00292616;1.39285;0.395643;12;CAGGAAACAGAACAGCTGTCC;CGACCATCTGTT;+!MGA1#MA0336.1;0;0.00410182;1.95246;0.445181;21;CAGGAAACAGAACAGCTGTCC;AGGACTATAGAACACTCTAAA;+!ZEB1#MA0103.1;-12;0.00423326;2.01503;0.445181;6;CAGGAAACAGAACAGCTGTCC;CAGGTG;-!Pax4#MA0068.1;-3;0.00691532;3.29169;0.540401;18;CAGGAAACAGAACAGCTGTCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!Mycn#MA0104.1;-12;0.00793148;3.77538;0.540401;6;CAGGAAACAGAACAGCTGTCC;CACGTG;+!HMG-I/Y#MA0045.1;0;0.00843787;4.01643;0.540401;16;CAGGAAACAGAACAGCTGTCC;CAACAAATGGAAAAAC;+!id1#MA0120.1;-2;0.0107152;5.10042;0.547246;12;CAGGAAACAGAACAGCTGTCC;CGAAAAGGAAAA;-!MAX#MA0058.1;-9;0.0109906;5.23153;0.547246;10;CAGGAAACAGAACAGCTGTCC;AACCACGTGA;+!RTG3#MA0376.1;-5;0.011379;5.41641;0.547246;16;CAGGAAACAGAACAGCTGTCC;ATATTAGCACGTGCTTAGTC;+!Arnt#MA0004.1;-12;0.011564;5.50446;0.547246;6;CAGGAAACAGAACAGCTGTCC;CACGTG;+!SFL1#MA0377.1;0;0.0155987;7.42498;0.671074;21;CAGGAAACAGAACAGCTGTCC;TAGAGAATAGAAGAAATAAAA;+!USF1#MA0093.1;-11;0.0164991;7.85359;0.67895;7;CAGGAAACAGAACAGCTGTCC;CCACGTG;-!GAL4#MA0299.1;0;0.0183401;8.7299;0.708728;15;CAGGAAACAGAACAGCTGTCC;CGGGGAACAGTACTC;+!DOT6#MA0351.1;-2;0.0189792;9.03411;0.708728;19;CAGGAAACAGAACAGCTGTCC;AGGATGCGATGAGGTGCAGAA;-!HAC1#MA0310.1;-10;0.0199198;9.4818;0.708728;8;CAGGAAACAGAACAGCTGTCC;GACACGTG;+
}}
}}

Latest revision as of 12:09, 7 September 2012

Full Name: PTF1A_f1

Motif matrix
POACGT
12.09183673469387984.6428571428571411.17346938775512.0918367346938798
24.38775510204082050.03.77551020408163041.83673469387755
31.836734693877551.020408163265317.14285714285714950.0
40.01.836734693877558.1632653061224510.0
55.61224489795917950.04.38775510204082050.0
67.14285714285714951.020408163265311.836734693877550.0
78.9795918367346910.00.01.02040816326531
82.65306122448983.67346938775511.73469387755102011.93877551020408
93.67346938775511.73469387755102010.9183673469387763.6734693877551
100.9183673469387763.571428571428574.489795918367351.02040816326531
114.591836734693882.75510204081633030.9183673469387761.7346938775510201
126.32653061224491.938775510204081.73469387755102010.0
131.020408163265318.9795918367346910.00.0
148.1632653061224510.00.01.83673469387755
150.02.75510204081633035.5102040816326511.7346938775510201
161.938775510204085.306122448979592.75510204081633030.0
171.836734693877550.00.08.163265306122451
180.00.010.00.0
191.73469387755102013.67346938775510.04.59183673469388
200.05.204081632653064.795918367346940.0
212.52551020408163045.2806122448979590.6887755102040821.5051020408163298

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NHLH1#MA0048.1-90.0002128270.1013060.13806912CAGGAAACAGAACAGCTGTCCACGCAGCTGCGC-
twi#MA0249.1-90.0002917580.1388770.13806912CAGGAAACAGAACAGCTGTCCCAACATATGCGA-
sna#MA0086.1-120.001008670.4801260.229446CAGGAAACAGAACAGCTGTCCCAGGTG+
Myf#MA0055.1-60.002926161.392850.39564312CAGGAAACAGAACAGCTGTCCCAGCAGCTGCTG+
TAL1::TCF3#MA0091.1-80.002926161.392850.39564312CAGGAAACAGAACAGCTGTCCCGACCATCTGTT+
MGA1#MA0336.100.004101821.952460.44518121CAGGAAACAGAACAGCTGTCCAGGACTATAGAACACTCTAAA+
ZEB1#MA0103.1-120.004233262.015030.4451816CAGGAAACAGAACAGCTGTCCCAGGTG-
Pax4#MA0068.1-30.006915323.291690.54040118CAGGAAACAGAACAGCTGTCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
Mycn#MA0104.1-120.007931483.775380.5404016CAGGAAACAGAACAGCTGTCCCACGTG+
HMG-I/Y#MA0045.100.008437874.016430.54040116CAGGAAACAGAACAGCTGTCCCAACAAATGGAAAAAC+
id1#MA0120.1-20.01071525.100420.54724612CAGGAAACAGAACAGCTGTCCCGAAAAGGAAAA-
MAX#MA0058.1-90.01099065.231530.54724610CAGGAAACAGAACAGCTGTCCAACCACGTGA+
RTG3#MA0376.1-50.0113795.416410.54724616CAGGAAACAGAACAGCTGTCCATATTAGCACGTGCTTAGTC+
Arnt#MA0004.1-120.0115645.504460.5472466CAGGAAACAGAACAGCTGTCCCACGTG+
SFL1#MA0377.100.01559877.424980.67107421CAGGAAACAGAACAGCTGTCCTAGAGAATAGAAGAAATAAAA+
USF1#MA0093.1-110.01649917.853590.678957CAGGAAACAGAACAGCTGTCCCCACGTG-
GAL4#MA0299.100.01834018.72990.70872815CAGGAAACAGAACAGCTGTCCCGGGGAACAGTACTC+
DOT6#MA0351.1-20.01897929.034110.70872819CAGGAAACAGAACAGCTGTCCAGGATGCGATGAGGTGCAGAA-
HAC1#MA0310.1-100.01991989.48180.7087288CAGGAAACAGAACAGCTGTCCGACACGTG+
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