MCL coexpression mm9:1234

Phase1 CAGE Peaks

	Short description
Mm9::chr10:128346925..128346929,+	p3@Cd63 p3@LOC100505035
Mm9::chr10:128346951..128346986,+	p1@Cd63 p1@LOC100505035
Mm9::chr10:77888435..77888474,+	p2@Cstb
Mm9::chr18:50294404..50294420,+	p1@ENSMUST00000163860
Mm9::chr2:32731656..32731761,+	p1@Fam129b
Mm9::chr5:137463454..137463512,+	p1@Plod3

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0002020	protease binding	0.0127348408191326
GO:0008475	procollagen-lysine 5-dioxygenase activity	0.0127348408191326
GO:0010008	endosome membrane	0.0127348408191326
GO:0044440	endosomal part	0.0127348408191326
GO:0031418	L-ascorbic acid binding	0.0356126357062929
GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	0.0356126357062929
GO:0005770	late endosome	0.0356126357062929
GO:0004869	cysteine protease inhibitor activity	0.0356126357062929
GO:0008344	adult locomotory behavior	0.0474470832588804
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	0.0476580977648303
GO:0051213	dioxygenase activity	0.0476580977648303
GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	0.0476580977648303
GO:0030534	adult behavior	0.0476580977648303

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

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Cell Type

Ontology term	p-value	n
migratory neural crest cell	1.54e-07	10
neuron associated cell	1.54e-07	10
glial cell (sensu Vertebrata)	1.54e-07	10
neuron associated cell (sensu Vertebrata)	1.54e-07	10
glial cell	1.54e-07	10
glioblast	1.54e-07	10
glioblast (sensu Vertebrata)	1.54e-07	10

Uber Anatomy

Ontology term	p-value	n
dense mesenchyme tissue	7.72e-07	11
paraxial mesoderm	7.72e-07	11
presumptive paraxial mesoderm	7.72e-07	11

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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