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MCL coexpression mm9:2000: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000055!7.99e-17!49;CL:0000221!3.77e-14!44;CL:0000133!3.77e-14!44;CL:0002319!1.01e-13!43;CL:0000393!4.63e-11!39;CL:0000211!4.63e-11!39;CL:0002321!8.29e-09!70;CL:0000540!2.84e-08!33;CL:0000047!2.84e-08!33;CL:0000031!2.84e-08!33;CL:0000404!2.84e-08!33;CL:0000333!2.89e-07!10;CL:0000095!2.89e-07!10;CL:0000243!2.89e-07!10;CL:0000123!2.89e-07!10;CL:0000125!2.89e-07!10;CL:0000030!2.89e-07!10;CL:0000339!2.89e-07!10
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001016!6.85e-22!75;UBERON:0004121!1.15e-20!95;UBERON:0000924!1.15e-20!95;UBERON:0006601!1.15e-20!95;UBERON:0001017!1.32e-20!73;UBERON:0000025!1.53e-18!114;UBERON:0004111!1.79e-18!122;UBERON:0010314!1.80e-17!92;UBERON:0002346!5.58e-14!64;UBERON:0003075!5.58e-14!64;UBERON:0007284!5.58e-14!64;UBERON:0000073!9.26e-14!54;UBERON:0001049!7.80e-13!52;UBERON:0005068!7.80e-13!52;UBERON:0006241!7.80e-13!52;UBERON:0007135!7.80e-13!52;UBERON:0010371!1.03e-12!73;UBERON:0000955!1.23e-11!47;UBERON:0006238!1.23e-11!47;UBERON:0002616!3.38e-11!46;UBERON:0002020!1.16e-08!34;UBERON:0003056!1.65e-08!49;UBERON:0003080!2.25e-08!40;UBERON:0002780!6.19e-08!39;UBERON:0001890!6.19e-08!39;UBERON:0006240!6.19e-08!39;UBERON:0005178!7.62e-08!17;UBERON:0005181!7.62e-08!17;UBERON:0002224!7.62e-08!17;UBERON:0000915!7.62e-08!17;UBERON:0008947!7.62e-08!17;UBERON:0003258!7.62e-08!17;UBERON:0003528!1.15e-07!29;UBERON:0002791!1.15e-07!29;UBERON:0001893!1.15e-07!29;UBERON:0002048!1.24e-07!14;UBERON:0000117!1.24e-07!14;UBERON:0000171!1.24e-07!14;UBERON:0000170!1.24e-07!14;UBERON:0005597!1.24e-07!14;UBERON:0000118!1.24e-07!14;UBERON:0005157!3.74e-07!20
}}
}}

Revision as of 17:46, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:8368470..8368480,-p7@Tns3
Mm9::chr11:8368491..8368514,-p2@Tns3
Mm9::chr11:8368519..8368548,-p5@Tns3
Mm9::chr11:8368574..8368583,-p8@Tns3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
nervous system6.85e-2275
ectoderm-derived structure1.15e-2095
ectoderm1.15e-2095
presumptive ectoderm1.15e-2095
central nervous system1.32e-2073
tube1.53e-18114
anatomical conduit1.79e-18122
structure with developmental contribution from neural crest1.80e-1792
neurectoderm5.58e-1464
neural plate5.58e-1464
presumptive neural plate5.58e-1464
regional part of nervous system9.26e-1454
neural tube7.80e-1352
neural rod7.80e-1352
future spinal cord7.80e-1352
neural keel7.80e-1352
ecto-epithelium1.03e-1273
brain1.23e-1147
future brain1.23e-1147
regional part of brain3.38e-1146
gray matter1.16e-0834
pre-chordal neural plate1.65e-0849
anterior neural tube2.25e-0840
regional part of forebrain6.19e-0839
forebrain6.19e-0839
future forebrain6.19e-0839
thoracic cavity element7.62e-0817
thoracic segment organ7.62e-0817
thoracic cavity7.62e-0817
thoracic segment of trunk7.62e-0817
respiratory primordium7.62e-0817
endoderm of foregut7.62e-0817
brain grey matter1.15e-0729
regional part of telencephalon1.15e-0729
telencephalon1.15e-0729
lung1.24e-0714
respiratory tube1.24e-0714
respiration organ1.24e-0714
pair of lungs1.24e-0714
lung primordium1.24e-0714
lung bud1.24e-0714
epithelial fold3.74e-0720


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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