FFCP PHASE1:Mm9::chr18:35931142..35931212,+: Difference between revisions
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|id=chr18:35931142..35931212,+ | |id=chr18:35931142..35931212,+ | ||
|ontology_enrichment_celltype=CL:0000221!3.27e-14!44;CL:0000133!3.27e-14!44;CL:0002319!1.21e-13!43;CL:0000117!1.03e-11!23;CL:0000337!1.03e-11!23;CL:0000540!2.47e-11!33;CL:0000047!2.47e-11!33;CL:0000031!2.47e-11!33;CL:0000404!2.47e-11!33;CL:0000055!3.21e-10!50;CL:0000393!9.41e-08!39;CL:0000211!9.41e-08!39 | |ontology_enrichment_celltype=CL:0000221!3.27e-14!44;CL:0000133!3.27e-14!44;CL:0002319!1.21e-13!43;CL:0000117!1.03e-11!23;CL:0000337!1.03e-11!23;CL:0000540!2.47e-11!33;CL:0000047!2.47e-11!33;CL:0000031!2.47e-11!33;CL:0000404!2.47e-11!33;CL:0000055!3.21e-10!50;CL:0000393!9.41e-08!39;CL:0000211!9.41e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.25e-14,44;CL:0000133,3.25e-14,44;CL:0002319,1.20e-13,43;CL:0000117,1.02e-11,23;CL:0000337,1.02e-11,23;CL:0000540,2.45e-11,33;CL:0000047,2.45e-11,33;CL:0000031,2.45e-11,33;CL:0000404,2.45e-11,33;CL:0000393,1.07e-07,39;CL:0000211,1.07e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.15e-21!75;UBERON:0001016!6.15e-21!75;UBERON:0001017!7.99e-20!73;UBERON:0005743!7.99e-20!73;UBERON:0004121!3.11e-19!102;UBERON:0000924!3.11e-19!102;UBERON:0006601!3.11e-19!102;UBERON:0002346!6.51e-18!71;UBERON:0003075!6.51e-18!71;UBERON:0007284!6.51e-18!71;UBERON:0001049!9.24e-16!52;UBERON:0005068!9.24e-16!52;UBERON:0006241!9.24e-16!52;UBERON:0007135!9.24e-16!52;UBERON:0000033!5.86e-15!63;UBERON:0000955!1.34e-13!50;UBERON:0006238!1.34e-13!50;UBERON:0002616!4.12e-13!49;UBERON:0003056!1.59e-12!49;UBERON:0003080!2.66e-10!40;UBERON:0002020!7.37e-10!34;UBERON:0002780!7.74e-10!39;UBERON:0001890!7.74e-10!39;UBERON:0006240!7.74e-10!39;UBERON:0000153!9.83e-10!94;UBERON:0007811!6.47e-09!86;UBERON:0002791!1.58e-07!29;UBERON:0003528!1.58e-07!29;UBERON:0001893!1.58e-07!29 | |ontology_enrichment_uberon=UBERON:0000073!6.15e-21!75;UBERON:0001016!6.15e-21!75;UBERON:0001017!7.99e-20!73;UBERON:0005743!7.99e-20!73;UBERON:0004121!3.11e-19!102;UBERON:0000924!3.11e-19!102;UBERON:0006601!3.11e-19!102;UBERON:0002346!6.51e-18!71;UBERON:0003075!6.51e-18!71;UBERON:0007284!6.51e-18!71;UBERON:0001049!9.24e-16!52;UBERON:0005068!9.24e-16!52;UBERON:0006241!9.24e-16!52;UBERON:0007135!9.24e-16!52;UBERON:0000033!5.86e-15!63;UBERON:0000955!1.34e-13!50;UBERON:0006238!1.34e-13!50;UBERON:0002616!4.12e-13!49;UBERON:0003056!1.59e-12!49;UBERON:0003080!2.66e-10!40;UBERON:0002020!7.37e-10!34;UBERON:0002780!7.74e-10!39;UBERON:0001890!7.74e-10!39;UBERON:0006240!7.74e-10!39;UBERON:0000153!9.83e-10!94;UBERON:0007811!6.47e-09!86;UBERON:0002791!1.58e-07!29;UBERON:0003528!1.58e-07!29;UBERON:0001893!1.58e-07!29 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.07e-21,75;UBERON:0001017,7.89e-20,73;UBERON:0004121,1.08e-19,95;UBERON:0000924,1.08e-19,95;UBERON:0006601,1.08e-19,95;UBERON:0002346,7.36e-19,64;UBERON:0003075,7.36e-19,64;UBERON:0007284,7.36e-19,64;UBERON:0010314,2.19e-17,92;UBERON:0010371,4.01e-16,73;UBERON:0001049,9.15e-16,52;UBERON:0005068,9.15e-16,52;UBERON:0006241,9.15e-16,52;UBERON:0007135,9.15e-16,52;UBERON:0000073,1.14e-15,54;UBERON:0000955,3.87e-13,47;UBERON:0006238,3.87e-13,47;UBERON:0002616,1.19e-12,46;UBERON:0003056,1.58e-12,49;UBERON:0003080,2.64e-10,40;UBERON:0002020,7.33e-10,34;UBERON:0002780,7.70e-10,39;UBERON:0001890,7.70e-10,39;UBERON:0006240,7.70e-10,39;UBERON:0003528,1.58e-07,29;UBERON:0002791,1.58e-07,29;UBERON:0001893,1.58e-07,29 | |||
|phase1_expression=3.52327463630547,0.348975407639361,0.454999239389536,0.60492842261366,1.50268718983904,0.671517087647559,0.467225281191051,1.80772652818207,2.67498572088167,1.63845168425395,3.25314139628459,1.43589886191606,4.10881751834894,2.62261207256992,2.99798785634096,3.44207954562704,2.09868563438444,3.78554598429885,3.42786084014347,5.51706547337439,3.48677489619386,2.97872853602656,1.82839852397255,0.95995453676044,0.45881856213434,1.14846392823004,1.7230479846363,0,0.190023419456374,0.504060259519861,0.221730510655305,0,0.61506478758457,0,0.577703239502549,2.1610503896604,3.67504841272264,8.78916424547506,4.6880120671428,8.89990364755457,2.94115744015507,6.83045484958446,7.2826552954673,0.629484089877886,1.11514624341466,0.734187008646726,7.82391344348039,8.06693078607652,5.4921545683618,5.44403717407994,3.63964696225943,10.062679505548,4.19456515144341,5.80289713609076,2.68875039313971,3.08711323243136,2.86533439938757,6.18806510732931,16.589949790487,10.5798195854407,12.0427966666174,5.42151251310611,4.4464739805557,7.64914759689189,3.9554654502679,9.9467216092454,5.69240209984969,8.06858441175265,15.3460626216547,13.5005938331691,13.6711224878398,10.5690864229407,8.61387309711293,15.4338407010842,13.9934387686625,8.27296907949019,4.40463523997555,7.53355294702608,7.21950706304344,18.0684214190366,15.3699241252048,16.1483144872596,5.02529398202486,7.31591393041184,7.63991238884051,10.0173719061047,8.11518580554887,14.5391567743734,10.3744884866462,8.91744409260069,3.18850937571846,6.0229671388697,2.719885334831,1.61910957491345,1.29955283489534,3.13618820968135,1.12355536105401,3.06774580640504,3.63700406444016,4.24007489412408,10.9857867425811,0,2.54805239706646,0,1.29894624606728,2.78695852022608,2.52762222507392,1.59857431606684,2.84831672011889,4.75014845007439,3.12273588179045,6.08930956624282,4.38169444786511,2.86373017049983,6.34979018532806,5.52933001850572,2.22475470960936,5.06097749219691,4.42305275974937,5.3383060482645,3.97514733228708,2.42437626567611,0,7.02673912827713,6.0739544975902,1.27728527604296,4.79260498023681,4.19931911695385,4.06624726633807,9.43681028250383,5.94750783664214,15.4554853098823,8.51739168942155,5.11430914660661,7.2725815595846,8.92326946872667,7.12875546952214,2.98576729464223,2.0217820674694,3.15662783829711,8.58794923553845,9.88579049063934,9.18316862007281,7.38453607395004,9.93332887609387,6.79002717509704,8.05834831213668,4.65666067330228,12.5029435901048,8.50977360755187,7.74184946321375,6.57587197282724,5.00485048606076,4.52727816478817,3.70407845534298,4.37875387000685,2.1066395619397,2.83082697826187,4.54661599032948,4.76389276831654,4.22146907965973,8.10279276574567,5.68187365404505,5.90292695242211,7.0962871928194,5.34828072925938,5.09719462659276,6.07179780309281,5.59503489705834,5.25335885053105,3.72916523910936,5.55559952216263,4.61055242111206,3.62357330653004,6.9395683026162,15.6415010816512,2.97376904685418,3.70230793328962,4.90562976231038,3.25131340604614,3.73715637834071,3.63030344322017,3.7804267453628,3.99473814836374,2.37264530772256,2.79988223030818,4.77536896720512,2.78539060857611,2.72949721966768,0,3.24207074812041,1.59313018603494,14.035424670528,5.25543158004753,2.25415471346161,4.2766778847516,3.87904974335251,6.17195215034803,4.3000845244495,2.06654207171443,2.19798218977925,1.97435462274881,1.77871576252289,4.17112764290235,1.96558995113203,2.69834534861824,3.04290182082754,2.65294875727659,0.763877555344259,2.5892652370573,3.08056930872567,2.47105271869273,10.0637744569148,1.11642284300551,1.87222603868736,0.505157755894224,1.79397413521912,0.964887042726734,4.61882975416512,6.06372517665551,6.02970412835496,5.26209765903083,3.98973422090454,4.85768146581266,4.52282917683426,4.87834119644497,5.67486518782288,6.42247599981447,5.10255259703959,4.09658286789345,4.83517949224508,4.05017364028232,0,5.98296252200581,2.95058563811422,2.20749397043786,11.0779907091576,11.0178985396671,2.45902418065013,5.04941854408746,8.83423014365519,6.63745865304285,4.73931475012158,4.30143836314594,4.90157082981267,6.22768367735431,4.85772842009873,5.84511715822624,6.7198922250909,9.3183181762324,5.96148357874728,6.05423052468668,8.79589580509311,4.94910368917606,1.32745138339963,2.6705869977048,3.62788268357701,1.88605079755898,4.72483028609236,3.3817866273832,2.06742634534577,3.99887102425256,0.712994756769443,1.26414703174326,1.05418608574999,3.09406629744561,5.7874732978144,6.30213829109586,6.07985813778946,6.43011105094777,5.49754724291048,5.52943334566419,6.74650984468696,9.43841342255258,3.05073220482823,2.54198485036584,1.7642271844397,6.43056386471772,3.39075296061402,4.04096597018644,3.70054266409723,2.29797259643086,2.04036585640896,10.9400928186201,2.9048049735635,5.77883230297023,2.40752885580625,1.88368457004691,2.46049609897845,2.51655990527175,3.22959016988325,3.49878630809145,4.56059913554598,3.81868247206045,6.32671987162271,3.04979200690273,4.53622431451565,3.13632444021703,2.83871332870031,3.64133735239016,4.1326727862668,3.1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| ||
|short_description=p3@Ube2d2 | |short_description=p3@Ube2d2 | ||
}} | }} |
Revision as of 20:12, 13 November 2012
Short description: | p3@Ube2d2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ube2d2_5end |
Coexpression cluster: | MCL_coexpression_mm9:643 |
Association with transcript: | 0bp_to_ENSMUST00000170693, NM_019912, uc012bbj.1_5end |
EntrezGene: | Ube2d2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.25e-14 | 44 |
neurectodermal cell | 3.25e-14 | 44 |
neural cell | 1.20e-13 | 43 |
CNS neuron (sensu Vertebrata) | 1.02e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.02e-11 | 23 |
neuron | 2.45e-11 | 33 |
neuronal stem cell | 2.45e-11 | 33 |
neuroblast | 2.45e-11 | 33 |
electrically signaling cell | 2.45e-11 | 33 |
electrically responsive cell | 1.07e-07 | 39 |
electrically active cell | 1.07e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.07e-21 | 75 |
central nervous system | 7.89e-20 | 73 |
ectoderm-derived structure | 1.08e-19 | 95 |
ectoderm | 1.08e-19 | 95 |
presumptive ectoderm | 1.08e-19 | 95 |
neurectoderm | 7.36e-19 | 64 |
neural plate | 7.36e-19 | 64 |
presumptive neural plate | 7.36e-19 | 64 |
structure with developmental contribution from neural crest | 2.19e-17 | 92 |
ecto-epithelium | 4.01e-16 | 73 |
neural tube | 9.15e-16 | 52 |
neural rod | 9.15e-16 | 52 |
future spinal cord | 9.15e-16 | 52 |
neural keel | 9.15e-16 | 52 |
regional part of nervous system | 1.14e-15 | 54 |
brain | 3.87e-13 | 47 |
future brain | 3.87e-13 | 47 |
regional part of brain | 1.19e-12 | 46 |
pre-chordal neural plate | 1.58e-12 | 49 |
anterior neural tube | 2.64e-10 | 40 |
gray matter | 7.33e-10 | 34 |
regional part of forebrain | 7.70e-10 | 39 |
forebrain | 7.70e-10 | 39 |
future forebrain | 7.70e-10 | 39 |
brain grey matter | 1.58e-07 | 29 |
regional part of telencephalon | 1.58e-07 | 29 |
telencephalon | 1.58e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.