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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!7.64e-20!64;UBERON:0003075!7.64e-20!64;UBERON:0007284!7.64e-20!64;UBERON:0000073!7.33e-18!54;UBERON:0010371!7.98e-18!73;UBERON:0001049!3.59e-17!52;UBERON:0005068!3.59e-17!52;UBERON:0006241!3.59e-17!52;UBERON:0007135!3.59e-17!52;UBERON:0000955!3.50e-16!47;UBERON:0006238!3.50e-16!47;UBERON:0004121!1.63e-15!95;UBERON:0000924!1.63e-15!95;UBERON:0006601!1.63e-15!95;UBERON:0001017!2.20e-15!73;UBERON:0002616!8.17e-15!46;UBERON:0001016!8.87e-15!75;UBERON:0003056!3.39e-14!49;UBERON:0010314!1.45e-13!92;UBERON:0003080!1.41e-10!40;UBERON:0002780!2.08e-09!39;UBERON:0001890!2.08e-09!39;UBERON:0006240!2.08e-09!39;UBERON:0002950!3.13e-09!4;UBERON:0001891!3.13e-09!4;UBERON:0009616!3.13e-09!4;UBERON:0010286!3.13e-09!4;UBERON:0002420!1.70e-08!8;UBERON:0007245!1.70e-08!8;UBERON:0010009!1.70e-08!8;UBERON:0010011!1.70e-08!8;UBERON:0000454!1.70e-08!8;UBERON:0002020!2.84e-08!34;UBERON:0003076!4.68e-08!12;UBERON:0003057!4.68e-08!12;UBERON:0003528!2.98e-07!29;UBERON:0002791!2.98e-07!29;UBERON:0001893!2.98e-07!29;UBERON:0002038!3.24e-07!3;UBERON:0009663!3.24e-07!3;UBERON:0009661!3.24e-07!3;UBERON:0000125!3.24e-07!3;UBERON:0002308!3.24e-07!3
|ontology_enrichment_uberon=UBERON:0002346!7.64e-20!64;UBERON:0003075!7.64e-20!64;UBERON:0007284!7.64e-20!64;UBERON:0000073!7.33e-18!54;UBERON:0010371!7.98e-18!73;UBERON:0001049!3.59e-17!52;UBERON:0005068!3.59e-17!52;UBERON:0006241!3.59e-17!52;UBERON:0007135!3.59e-17!52;UBERON:0000955!3.50e-16!47;UBERON:0006238!3.50e-16!47;UBERON:0004121!1.63e-15!95;UBERON:0000924!1.63e-15!95;UBERON:0006601!1.63e-15!95;UBERON:0001017!2.20e-15!73;UBERON:0002616!8.17e-15!46;UBERON:0001016!8.87e-15!75;UBERON:0003056!3.39e-14!49;UBERON:0010314!1.45e-13!92;UBERON:0003080!1.41e-10!40;UBERON:0002780!2.08e-09!39;UBERON:0001890!2.08e-09!39;UBERON:0006240!2.08e-09!39;UBERON:0002950!3.13e-09!4;UBERON:0001891!3.13e-09!4;UBERON:0009616!3.13e-09!4;UBERON:0010286!3.13e-09!4;UBERON:0002420!1.70e-08!8;UBERON:0007245!1.70e-08!8;UBERON:0010009!1.70e-08!8;UBERON:0010011!1.70e-08!8;UBERON:0000454!1.70e-08!8;UBERON:0002020!2.84e-08!34;UBERON:0003076!4.68e-08!12;UBERON:0003057!4.68e-08!12;UBERON:0003528!2.98e-07!29;UBERON:0002791!2.98e-07!29;UBERON:0001893!2.98e-07!29;UBERON:0002038!3.24e-07!3;UBERON:0009663!3.24e-07!3;UBERON:0009661!3.24e-07!3;UBERON:0000125!3.24e-07!3;UBERON:0002308!3.24e-07!3
|tfbs_overrepresentation_for_novel_motifs=0.438063,0.660133,0.411716,0.480627,0.299217,0.495263,0.587291,0.206208,0.215218,0.0609112,0.542749,1.40872,1.12363,0.599731,0.315771,0,0.795315,0.792229,0.19222,0.112498,0.374752,0.586604,0.598814,0.29769,1.07577,0.62766,0.184473,0.516511,0.344372,1.41139,0.50223,0.897561,0.289148,0.166577,0.316253,0.101236,0.279977,0.57142,0.258564,0.230656,0.800988,0.507468,0.0742755,0.317766,0.115244,0.469348,0.714592,0.532496,0.0609361,0.347313,0.777641,0.654933,0.431711,1.04034,1.0579,0.606984,0.356236,0.56214,0.176152,0.604914,0.877332,0.664501,0.642748,0.766235,0.618279,0.807219,1.19497,1.54543,0.872612,1.39786,0.392734,0.608073,0.0869413,1.09164,0.17012,0.936963,0.498755,0.703064,0.859987,0.98764,0.610783,0.812889,0.663039,0.200155,0.975495,0.146394,0.042613,0.447265,0.719558,1.70793,1.26498,0.980512,0.910485,0.823238,0.254625,0.237542,0.589174,0.913319,0.71485,0.127063,0.7665,0.897279,1.02279,0.778243,0.777175,0.507021,0.837607,0.528416,0.998363,0.376549,0.430942,1.02459,0.380122,0.547992,1.27206,0.293461,0.187586,0.484437,0.796633,0.757997,1.09707,0.745011,0.629509,0.702145,1.32639,0.863723,0.595563,0.903645,1.19345,0.308038,1.00568,0.473246,1.16374,0.620831,1.29374,0.580299,1.13474,0.508896,1.24438,2.07659,1.67603,1.19971,0.641722,0.908128,0.770616,0.507927,0.717753,2.03691,0.448938,0.300961,0.452587,0.545091,1.04192,0.243291,0.619892,1.12411,0.655955,0.327731,1.11101,0.446272,1.25393,0.974632,0.864173,0.428662,0.767269,0.612377,0.278874,0.573477,0.0907999
}}
}}

Revision as of 19:30, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr19:17211323..17211328,+p10@Prune2
Mm9::chr5:27208073..27208074,+p@chr5:27208073..27208074
+
Mm9::chr5:27384379..27384387,+p@chr5:27384379..27384387
+
Mm9::chr5:27507996..27507999,+p@chr5:27507996..27507999
+
Mm9::chr6:140439585..140439594,+p@chr6:140439585..140439594
+
Mm9::chr8:112685265..112685266,-p@chr8:112685265..112685266
-
Mm9::chr9:107242924..107242979,+p1@6430571L13Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
neuron of the substantia nigra3.24e-073

Uber Anatomy
Ontology termp-valuen
neurectoderm7.64e-2064
neural plate7.64e-2064
presumptive neural plate7.64e-2064
regional part of nervous system7.33e-1854
ecto-epithelium7.98e-1873
neural tube3.59e-1752
neural rod3.59e-1752
future spinal cord3.59e-1752
neural keel3.59e-1752
brain3.50e-1647
future brain3.50e-1647
ectoderm-derived structure1.63e-1595
ectoderm1.63e-1595
presumptive ectoderm1.63e-1595
central nervous system2.20e-1573
regional part of brain8.17e-1546
nervous system8.87e-1575
pre-chordal neural plate3.39e-1449
structure with developmental contribution from neural crest1.45e-1392
anterior neural tube1.41e-1040
regional part of forebrain2.08e-0939
forebrain2.08e-0939
future forebrain2.08e-0939
regional part of midbrain3.13e-094
midbrain3.13e-094
presumptive midbrain3.13e-094
midbrain neural tube3.13e-094
basal ganglion1.70e-088
nuclear complex of neuraxis1.70e-088
aggregate regional part of brain1.70e-088
collection of basal ganglia1.70e-088
cerebral subcortex1.70e-088
gray matter2.84e-0834
posterior neural tube4.68e-0812
chordal neural plate4.68e-0812
brain grey matter2.98e-0729
regional part of telencephalon2.98e-0729
telencephalon2.98e-0729
substantia nigra3.24e-073
telencephalic nucleus3.24e-073
midbrain nucleus3.24e-073
neural nucleus3.24e-073
nucleus of brain3.24e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}