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|ontology_enrichment_uberon=UBERON:0004176!1.62e-52!17;UBERON:0009196!1.62e-52!17;UBERON:0009117!1.62e-52!17;UBERON:0000991!1.52e-49!18;UBERON:0005564!1.52e-49!18;UBERON:0000473!7.48e-45!14;UBERON:0003135!8.33e-42!15;UBERON:0003101!3.86e-39!16;UBERON:0000079!3.86e-39!16;UBERON:0003133!6.77e-37!24;UBERON:0005156!5.65e-34!26;UBERON:0000990!5.65e-34!26;UBERON:0002323!1.56e-23!37;UBERON:0004458!1.56e-23!37;UBERON:0003886!6.97e-23!38;UBERON:0002553!2.89e-22!39;UBERON:0000464!7.73e-15!57;UBERON:0000466!2.50e-10!79;UBERON:0000992!5.62e-09!3;UBERON:0000926!1.55e-07!120;UBERON:0004120!1.55e-07!120;UBERON:0006603!1.55e-07!120
|ontology_enrichment_uberon=UBERON:0004176!1.62e-52!17;UBERON:0009196!1.62e-52!17;UBERON:0009117!1.62e-52!17;UBERON:0000991!1.52e-49!18;UBERON:0005564!1.52e-49!18;UBERON:0000473!7.48e-45!14;UBERON:0003135!8.33e-42!15;UBERON:0003101!3.86e-39!16;UBERON:0000079!3.86e-39!16;UBERON:0003133!6.77e-37!24;UBERON:0005156!5.65e-34!26;UBERON:0000990!5.65e-34!26;UBERON:0002323!1.56e-23!37;UBERON:0004458!1.56e-23!37;UBERON:0003886!6.97e-23!38;UBERON:0002553!2.89e-22!39;UBERON:0000464!7.73e-15!57;UBERON:0000466!2.50e-10!79;UBERON:0000992!5.62e-09!3;UBERON:0000926!1.55e-07!120;UBERON:0004120!1.55e-07!120;UBERON:0006603!1.55e-07!120
|tfbs_overrepresentation_for_novel_motifs=0.267173,0.110566,0.245304,1.48515,0.922539,0.315748,1.02601,0.303924,0.658686,0.0641678,0.357058,0.385627,0.0909495,1.85064,0.504927,0,0.587245,0.150639,0.279039,0.143041,0.616152,0.447169,0.406794,0.155356,0.251585,0.432737,1.42253,1.59553,0.191143,0.438367,1.55163,0.683831,0.14899,0.504772,0.505829,0.0172637,0.142225,0.382372,0.79515,0.107198,0.910079,0.326286,0.407596,0.980484,0.461548,0.293566,0.512146,0.34807,0.337012,0.564214,0.570705,1.15826,0.419161,0.82076,0.837732,0.414119,0.581069,0.37415,0.912284,1.0604,0.664611,0.46618,0.694361,0.560059,0.424276,0.598412,0.970969,1.3158,0.660133,1.17005,0.229771,0.647992,0.473369,0.870406,0.240236,1.26514,0.504564,0.50152,0.648171,0.218647,0.651601,0.60374,0.464847,0.0868537,0.758319,0.00596121,0.00753188,0.053731,0.516731,1.47691,1.03946,0.763136,1.66197,0.16091,0.391609,0.72905,0.299765,0.698838,2.20189,0.67526,2.69269,0.683562,0.803823,0.571268,0.57027,0.869995,0.627019,0.344504,0.63348,0.216685,0.261228,0.805555,0.219561,0.361667,1.04639,0.152197,0.00984144,0.306448,0.58848,0.850885,0.875675,0.540309,1.10848,0.500675,1.09972,0.651709,0.403884,1.64843,0.969481,0.163147,0.787341,0.296885,0.940498,1.0915,1.06766,0.231689,1.38011,0.873625,1.01927,1.84381,1.44523,0.975592,0.445463,0.693891,0.564145,0.326684,0.515065,1.80426,0.276297,0.157809,0.201988,0.663851,0.822286,0.747142,0.425729,0.901933,0.458393,0.52735,0.73227,0.752802,1.02862,0.757491,0.652135,0.25933,0.561023,0.418964,0.141416,0.384198,0.556474
|tfbs_overrepresentation_for_novel_motifs=0.267173,0.110566,0.245304,1.48515,0.922539,0.315748,1.02601,0.303924,0.658686,0.0641678,0.357058,0.385627,0.0909495,1.85064,0.504927,0,0.587245,0.150639,0.279039,0.143041,0.616152,0.447169,0.406794,0.155356,0.251585,0.432737,1.42253,1.59553,0.191143,0.438367,1.55163,0.683831,0.14899,0.504772,0.505829,0.0172637,0.142225,0.382372,0.79515,0.107198,0.910079,0.326286,0.407596,0.980484,0.461548,0.293566,0.512146,0.34807,0.337012,0.564214,0.570705,1.15826,0.419161,0.82076,0.837732,0.414119,0.581069,0.37415,0.912284,1.0604,0.664611,0.46618,0.694361,0.560059,0.424276,0.598412,0.970969,1.3158,0.660133,1.17005,0.229771,0.647992,0.473369,0.870406,0.240236,1.26514,0.504564,0.50152,0.648171,0.218647,0.651601,0.60374,0.464847,0.0868537,0.758319,0.00596121,0.00753188,0.053731,0.516731,1.47691,1.03946,0.763136,1.66197,0.16091,0.391609,0.72905,0.299765,0.698838,2.20189,0.67526,2.69269,0.683562,0.803823,0.571268,0.57027,0.869995,0.627019,0.344504,0.63348,0.216685,0.261228,0.805555,0.219561,0.361667,1.04639,0.152197,0.00984144,0.306448,0.58848,0.850885,0.875675,0.540309,1.10848,0.500675,1.09972,0.651709,0.403884,1.64843,0.969481,0.163147,0.787341,0.296885,0.940498,1.0915,1.06766,0.231689,1.38011,0.873625,1.01927,1.84381,1.44523,0.975592,0.445463,0.693891,0.564145,0.326684,0.515065,1.80426,0.276297,0.157809,0.201988,0.663851,0.822286,0.747142,0.425729,0.901933,0.458393,0.52735,0.73227,0.752802,1.02862,0.757491,0.652135,0.25933,0.561023,0.418964,0.141416,0.384198,0.556474
|tfbs_overrepresentation_jaspar=MA0003.1;0.0244195,MA0004.1;13.4989,MA0006.1;2.91978,MA0007.1;0.290695,MA0009.1;0.709264,MA0014.1;0.357292,MA0017.1;0.186015,MA0019.1;0.535691,MA0024.1;0.667197,MA0025.1;0.936082,MA0027.1;2.34178,MA0028.1;0.516099,MA0029.1;0.64639,MA0030.1;0.65267,MA0031.1;0.618697,MA0038.1;0.432665,MA0040.1;0.721328,MA0041.1;0.239557,MA0042.1;0.648006,MA0043.1;0.802848,MA0046.1;0.743934,MA0048.1;0.168666,MA0050.1;0.337476,MA0051.1;0.440863,MA0052.1;0.729105,MA0055.1;0.10681,MA0056.1;0,MA0057.1;0.151898,MA0058.1;20.931,MA0059.1;9.70899,MA0060.1;0.713464,MA0061.1;0.129002,MA0063.1;0,MA0066.1;0.422624,MA0067.1;1.04514,MA0068.1;1.00777,MA0069.1;0.729433,MA0070.1;0.720077,MA0071.1;0.894189,MA0072.1;0.711905,MA0073.1;16.0954,MA0074.1;0.390075,MA0076.1;1.10234,MA0077.1;0.691048,MA0078.1;0.471303,MA0081.1;0.702944,MA0083.1;0.802078,MA0084.1;1.3693,MA0087.1;0.760279,MA0088.1;0.0983922,MA0089.1;0,MA0090.1;0.27428,MA0091.1;0.315003,MA0092.1;0.274547,MA0093.1;23.4299,MA0095.1;0,MA0098.1;0,MA0100.1;0.379666,MA0101.1;0.240622,MA0103.1;0.566591,MA0105.1;0.0633795,MA0106.1;0.478503,MA0107.1;0.189625,MA0108.2;0.557195,MA0109.1;0,MA0111.1;0.78079,MA0113.1;0.452439,MA0114.1;0.127366,MA0115.1;0.805567,MA0116.1;0.496352,MA0117.1;0.774259,MA0119.1;0.676816,MA0122.1;0.793507,MA0124.1;0.992825,MA0125.1;0.920215,MA0130.1;0,MA0131.1;0.531427,MA0132.1;0,MA0133.1;0,MA0135.1;0.838263,MA0136.1;0.408073,MA0139.1;0.297344,MA0140.1;1.75428,MA0141.1;0.603844,MA0142.1;0.604892,MA0143.1;0.467531,MA0144.1;0.406018,MA0145.1;0.494714,MA0146.1;0.651503,MA0147.1;2.652,MA0148.1;0.851609,MA0149.1;0.245177,MA0062.2;0.870192,MA0035.2;0.998181,MA0039.2;0.528684,MA0138.2;0.523978,MA0002.2;0.302282,MA0137.2;0.207733,MA0104.2;4.36809,MA0047.2;1.10318,MA0112.2;0.025769,MA0065.2;0.265926,MA0150.1;0.290598,MA0151.1;0,MA0152.1;0.432062,MA0153.1;0.854464,MA0154.1;0.042968,MA0155.1;0.30272,MA0156.1;0.200311,MA0157.1;0.574484,MA0158.1;0,MA0159.1;1.41054,MA0160.1;0.85749,MA0161.1;0,MA0162.1;2.56357,MA0163.1;0.467206,MA0164.1;0.408402,MA0080.2;0.190316,MA0018.2;0.417217,MA0099.2;0.518072,MA0079.2;0.890375,MA0102.2;1.42135,MA0258.1;0.118033,MA0259.1;4.91611,MA0442.1;0
}}
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Revision as of 12:00, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:23621952..23621962,+p@chr10:23621952..23621962
+
Mm9::chr10:35205159..35205169,-p@chr10:35205159..35205169
-
Mm9::chr16:48431394..48431436,+p1@Morc1
Mm9::chr17:13102737..13102743,-p3@Pnldc1
Mm9::chr18:36925872..36925891,-p1@Dnd1
Mm9::chr2:25702816..25702827,-p2@Sohlh1
Mm9::chr2:25702844..25702859,-p1@Sohlh1
Mm9::chr7:6615049..6615056,-p1@Zim2
Mm9::chr9:122656379..122656382,+p3@Gm9524
Mm9::chrX:131499234..131499265,-p1@Nxf2
Mm9::chrX:131499281..131499306,-p2@Nxf2
Mm9::chrX:53466080..53466092,-p1@Gm773


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007276gamete generation0.00176087567671179
GO:0019953sexual reproduction0.00176087567671179
GO:0000003reproduction0.00346714036832184
GO:0016973poly(A)+ mRNA export from nucleus0.0164899966144239
GO:0007283spermatogenesis0.0164899966144239
GO:0048232male gamete generation0.0164899966144239
GO:0006406mRNA export from nucleus0.0382687687244097
GO:0006405RNA export from nucleus0.0397410998723541
GO:0001541ovarian follicle development0.0397410998723541
GO:0048477oogenesis0.0397410998723541
GO:0051168nuclear export0.0397410998723541
GO:0048869cellular developmental process0.0397410998723541
GO:0030154cell differentiation0.0397410998723541
GO:0007281germ cell development0.0397410998723541
GO:0022601menstrual cycle phase0.0397410998723541
GO:0003723RNA binding0.0397410998723541
GO:0022602menstrual cycle process0.0397410998723541
GO:0003729mRNA binding0.0397410998723541
GO:0008585female gonad development0.0397410998723541
GO:0007292female gamete generation0.0397410998723541
GO:0046545development of primary female sexual characteristics0.0397410998723541
GO:0046660female sex differentiation0.0397410998723541
GO:0042698menstrual cycle0.0412187783858621
GO:0051028mRNA transport0.0412187783858621
GO:0007275multicellular organismal development0.0412187783858621
GO:0050658RNA transport0.0412187783858621
GO:0051236establishment of RNA localization0.0412187783858621
GO:0050657nucleic acid transport0.0412187783858621
GO:0008406gonad development0.0412187783858621
GO:0006403RNA localization0.0412187783858621
GO:0048608reproductive structure development0.0414443362371201
GO:0015931nucleobase, nucleoside, nucleotide and nucleic acid transport0.0416551345554524
GO:0045137development of primary sexual characteristics0.0425821034744584
GO:0048609reproductive process in a multicellular organism0.049047802191363
GO:0032504multicellular organism reproduction0.049047802191363
GO:0007548sex differentiation0.049047802191363



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0244195
MA0004.113.4989
MA0006.12.91978
MA0007.10.290695
MA0009.10.709264
MA0014.10.357292
MA0017.10.186015
MA0019.10.535691
MA0024.10.667197
MA0025.10.936082
MA0027.12.34178
MA0028.10.516099
MA0029.10.64639
MA0030.10.65267
MA0031.10.618697
MA0038.10.432665
MA0040.10.721328
MA0041.10.239557
MA0042.10.648006
MA0043.10.802848
MA0046.10.743934
MA0048.10.168666
MA0050.10.337476
MA0051.10.440863
MA0052.10.729105
MA0055.10.10681
MA0056.10
MA0057.10.151898
MA0058.120.931
MA0059.19.70899
MA0060.10.713464
MA0061.10.129002
MA0063.10
MA0066.10.422624
MA0067.11.04514
MA0068.11.00777
MA0069.10.729433
MA0070.10.720077
MA0071.10.894189
MA0072.10.711905
MA0073.116.0954
MA0074.10.390075
MA0076.11.10234
MA0077.10.691048
MA0078.10.471303
MA0081.10.702944
MA0083.10.802078
MA0084.11.3693
MA0087.10.760279
MA0088.10.0983922
MA0089.10
MA0090.10.27428
MA0091.10.315003
MA0092.10.274547
MA0093.123.4299
MA0095.10
MA0098.10
MA0100.10.379666
MA0101.10.240622
MA0103.10.566591
MA0105.10.0633795
MA0106.10.478503
MA0107.10.189625
MA0108.20.557195
MA0109.10
MA0111.10.78079
MA0113.10.452439
MA0114.10.127366
MA0115.10.805567
MA0116.10.496352
MA0117.10.774259
MA0119.10.676816
MA0122.10.793507
MA0124.10.992825
MA0125.10.920215
MA0130.10
MA0131.10.531427
MA0132.10
MA0133.10
MA0135.10.838263
MA0136.10.408073
MA0139.10.297344
MA0140.11.75428
MA0141.10.603844
MA0142.10.604892
MA0143.10.467531
MA0144.10.406018
MA0145.10.494714
MA0146.10.651503
MA0147.12.652
MA0148.10.851609
MA0149.10.245177
MA0062.20.870192
MA0035.20.998181
MA0039.20.528684
MA0138.20.523978
MA0002.20.302282
MA0137.20.207733
MA0104.24.36809
MA0047.21.10318
MA0112.20.025769
MA0065.20.265926
MA0150.10.290598
MA0151.10
MA0152.10.432062
MA0153.10.854464
MA0154.10.042968
MA0155.10.30272
MA0156.10.200311
MA0157.10.574484
MA0158.10
MA0159.11.41054
MA0160.10.85749
MA0161.10
MA0162.12.56357
MA0163.10.467206
MA0164.10.408402
MA0080.20.190316
MA0018.20.417217
MA0099.20.518072
MA0079.20.890375
MA0102.21.42135
MA0258.10.118033
MA0259.14.91611
MA0442.10
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