FFCP PHASE1:Hg19::chr10:99187568..99187591,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5223|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8888|TSSclassifier=S|UniProt=|association_with_transcript=134bp_to_uc010qov.1_5end|description=CAGE_peak_4_at_PGAM1_5end|id=chr10:99187568..99187591,+|ontology_enrichment_celltype=CL:0002321!5.45e-23!248;CL:0000220!6.63e-22!246;CL:0000066!4.91e-17!254;CL:0000055!2.72e-13!180;CL:0000222!8.08e-13!119;CL:0000548!1.55e-12!679;CL:0000004!1.55e-12!679;CL:0000255!1.55e-12!679;CL:0000012!4.49e-12!682;CL:0000144!1.94e-08!625;CL:0000077!3.96e-08!19;CL:0000359!6.80e-08!32;CL:1000449!1.49e-07!16;CL:1000497!2.53e-07!18;CL:0002518!2.53e-07!18;CL:0000003!3.23e-07!722;CL:0000192!3.40e-07!42;CL:0000514!3.40e-07!42;CL:1000507!6.68e-07!12;CL:1000494!6.68e-07!12;CL:0000183!7.71e-07!59;CL:0000393!8.67e-07!60;CL:0000211!8.67e-07!60|ontology_enrichment_celltype_v019=CL:0000077;1.88e-12;19!CL:0002322;1.01e-11;5!CL:0000359;6.90e-11;32!CL:0002539;1.39e-09;10!CL:1000507;3.94e-09;10!CL:1000494;3.94e-09;10!CL:0002166;2.12e-08;3!CL:1000497;5.20e-08;17!CL:0002518;5.20e-08;17!CL:0002621;7.67e-08;3!CL:0000192;2.09e-07;43!CL:1000449;2.16e-07;15|ontology_enrichment_celltype_v019_2=CL:0002321,1.17e-20,250;CL:0000222,6.33e-15,121;CL:0000077,1.03e-12,19;CL:0002322,1.48e-11,5;CL:0000359,2.88e-11,32;CL:0000066,3.11e-11,253;CL:0000192,1.08e-09,43;CL:0000514,1.08e-09,43;CL:0002539,1.09e-09,10;CL:1000507,1.76e-09,10;CL:1000494,1.76e-09,10;CL:0000393,9.99e-09,61;CL:0000211,9.99e-09,61;CL:0002166,2.14e-08,3;CL:1000497,3.93e-08,17;CL:0002518,3.93e-08,17;CL:0002621,5.91e-08,3;CL:0000213,8.73e-08,58;CL:0000215,8.73e-08,58;CL:1000449,1.39e-07,15;CL:0000680,4.99e-07,58;CL:0000056,4.99e-07,58;CL:0000355,4.99e-07,58|ontology_enrichment_development_v019=CL:0000514;2.09e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005256!7.71e-11!143;UBERON:0006554!3.44e-09!44;UBERON:0002100!4.54e-09!216;UBERON:0003104!9.57e-09!238;UBERON:0009142!9.57e-09!238;UBERON:0001008!9.94e-09!45;UBERON:0000481!3.07e-08!347;UBERON:0000486!4.92e-08!82;UBERON:0003914!5.69e-08!118;UBERON:0003064!5.74e-08!37;UBERON:0003886!1.22e-07!63;UBERON:0004211!1.49e-07!16;UBERON:0001285!1.49e-07!16;UBERON:0007684!1.49e-07!16;UBERON:0003220!1.49e-07!16;UBERON:0004208!1.49e-07!16;UBERON:0000080!4.48e-07!18;UBERON:0002120!4.48e-07!18;UBERON:0004875!4.48e-07!18;UBERON:0005721!4.48e-07!18;UBERON:0005754!4.48e-07!18;UBERON:0007297!4.48e-07!18;UBERON:0009773!6.68e-07!12;UBERON:0001231!6.68e-07!12;UBERON:0004810!6.68e-07!12;UBERON:0000914!7.78e-07!83;UBERON:0002329!7.78e-07!83;UBERON:0003077!7.78e-07!83;UBERON:0003059!7.78e-07!83;UBERON:0007282!7.78e-07!83;UBERON:0009618!7.78e-07!83;UBERON:0007285!7.78e-07!83;UBERON:0006555!8.62e-07!17;UBERON:0005103!8.62e-07!17;UBERON:0000083!8.62e-07!17;UBERON:0009201!8.62e-07!17;UBERON:0004819!8.62e-07!17;UBERON:0006553!8.62e-07!17;UBERON:0003074!8.62e-07!17;UBERON:0003060!8.62e-07!17|ontology_enrichment_uberon_v019=UBERON:0001135;6.58e-12;15!UBERON:0004237;1.39e-09;10!UBERON:0004695;1.39e-09;10!UBERON:0002111;1.39e-09;10!UBERON:0004178;1.39e-09;10!UBERON:0004211;3.94e-09;10!UBERON:0009773;3.94e-09;10!UBERON:0001231;3.94e-09;10!UBERON:0004810;3.94e-09;10!UBERON:0001949;7.67e-08;3!UBERON:0006555;2.16e-07;15!UBERON:0004819;2.16e-07;15!UBERON:0001285;2.16e-07;15!UBERON:0007684;2.16e-07;15!UBERON:0004573;3.67e-07;33!UBERON:0004571;3.67e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0001135,6.27e-12,15;UBERON:0004237,1.09e-09,10;UBERON:0004695,1.09e-09,10;UBERON:0002111,1.09e-09,10;UBERON:0004178,1.09e-09,10;UBERON:0004810,1.76e-09,10;UBERON:0000486,4.68e-09,83;UBERON:0004573,5.88e-08,33;UBERON:0004571,5.88e-08,33;UBERON:0001949,5.91e-08,3;UBERON:0001637,1.02e-07,42;UBERON:0003509,1.02e-07,42;UBERON:0004572,1.02e-07,42;UBERON:0004211,1.39e-07,15;UBERON:0009773,1.39e-07,15;UBERON:0001231,1.39e-07,15;UBERON:0001285,1.39e-07,15;UBERON:0007684,1.39e-07,15;UBERON:0004208,1.39e-07,15;UBERON:0007503,4.83e-07,78;UBERON:0006555,5.06e-07,16;UBERON:0004819,5.06e-07,16;UBERON:0002385,7.43e-07,64;UBERON:0001015,7.43e-07,64;UBERON:0000383,7.43e-07,64|phase1_expression=0.363356758541113,0,0.281908808191942,1.0007329835313,0,0,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0.218441372130172,0,0.247532705920093,0.331397375727916,2.01697543935533,1.20538905604795,2.19093027116212,1.95173119516203,0.861847406537515,0.612002073732759,0.313454721478088,0,0.684372125364421,0.125542639594803,0,0.164201178899891,0,0,0,0,0,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.722878304769133,0.50133791063589,1.15877215168659,1.5905718941022,0.486634870302636,0.567208902984407,0.221729397462564,0.351339142772504,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5223 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8888 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=134bp_to_uc010qov.1_5end | |||
|description=CAGE_peak_4_at_PGAM1_5end | |||
|id=chr10:99187568..99187591,+ | |||
|ontology_enrichment_celltype=CL:0002321!5.45e-23!248;CL:0000220!6.63e-22!246;CL:0000066!4.91e-17!254;CL:0000055!2.72e-13!180;CL:0000222!8.08e-13!119;CL:0000548!1.55e-12!679;CL:0000004!1.55e-12!679;CL:0000255!1.55e-12!679;CL:0000012!4.49e-12!682;CL:0000144!1.94e-08!625;CL:0000077!3.96e-08!19;CL:0000359!6.80e-08!32;CL:1000449!1.49e-07!16;CL:1000497!2.53e-07!18;CL:0002518!2.53e-07!18;CL:0000003!3.23e-07!722;CL:0000192!3.40e-07!42;CL:0000514!3.40e-07!42;CL:1000507!6.68e-07!12;CL:1000494!6.68e-07!12;CL:0000183!7.71e-07!59;CL:0000393!8.67e-07!60;CL:0000211!8.67e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.88e-12;19!CL:0002322;1.01e-11;5!CL:0000359;6.90e-11;32!CL:0002539;1.39e-09;10!CL:1000507;3.94e-09;10!CL:1000494;3.94e-09;10!CL:0002166;2.12e-08;3!CL:1000497;5.20e-08;17!CL:0002518;5.20e-08;17!CL:0002621;7.67e-08;3!CL:0000192;2.09e-07;43!CL:1000449;2.16e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.17e-20,250;CL:0000222,6.33e-15,121;CL:0000077,1.03e-12,19;CL:0002322,1.48e-11,5;CL:0000359,2.88e-11,32;CL:0000066,3.11e-11,253;CL:0000192,1.08e-09,43;CL:0000514,1.08e-09,43;CL:0002539,1.09e-09,10;CL:1000507,1.76e-09,10;CL:1000494,1.76e-09,10;CL:0000393,9.99e-09,61;CL:0000211,9.99e-09,61;CL:0002166,2.14e-08,3;CL:1000497,3.93e-08,17;CL:0002518,3.93e-08,17;CL:0002621,5.91e-08,3;CL:0000213,8.73e-08,58;CL:0000215,8.73e-08,58;CL:1000449,1.39e-07,15;CL:0000680,4.99e-07,58;CL:0000056,4.99e-07,58;CL:0000355,4.99e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;2.09e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!7.71e-11!143;UBERON:0006554!3.44e-09!44;UBERON:0002100!4.54e-09!216;UBERON:0003104!9.57e-09!238;UBERON:0009142!9.57e-09!238;UBERON:0001008!9.94e-09!45;UBERON:0000481!3.07e-08!347;UBERON:0000486!4.92e-08!82;UBERON:0003914!5.69e-08!118;UBERON:0003064!5.74e-08!37;UBERON:0003886!1.22e-07!63;UBERON:0004211!1.49e-07!16;UBERON:0001285!1.49e-07!16;UBERON:0007684!1.49e-07!16;UBERON:0003220!1.49e-07!16;UBERON:0004208!1.49e-07!16;UBERON:0000080!4.48e-07!18;UBERON:0002120!4.48e-07!18;UBERON:0004875!4.48e-07!18;UBERON:0005721!4.48e-07!18;UBERON:0005754!4.48e-07!18;UBERON:0007297!4.48e-07!18;UBERON:0009773!6.68e-07!12;UBERON:0001231!6.68e-07!12;UBERON:0004810!6.68e-07!12;UBERON:0000914!7.78e-07!83;UBERON:0002329!7.78e-07!83;UBERON:0003077!7.78e-07!83;UBERON:0003059!7.78e-07!83;UBERON:0007282!7.78e-07!83;UBERON:0009618!7.78e-07!83;UBERON:0007285!7.78e-07!83;UBERON:0006555!8.62e-07!17;UBERON:0005103!8.62e-07!17;UBERON:0000083!8.62e-07!17;UBERON:0009201!8.62e-07!17;UBERON:0004819!8.62e-07!17;UBERON:0006553!8.62e-07!17;UBERON:0003074!8.62e-07!17;UBERON:0003060!8.62e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0001135;6.58e-12;15!UBERON:0004237;1.39e-09;10!UBERON:0004695;1.39e-09;10!UBERON:0002111;1.39e-09;10!UBERON:0004178;1.39e-09;10!UBERON:0004211;3.94e-09;10!UBERON:0009773;3.94e-09;10!UBERON:0001231;3.94e-09;10!UBERON:0004810;3.94e-09;10!UBERON:0001949;7.67e-08;3!UBERON:0006555;2.16e-07;15!UBERON:0004819;2.16e-07;15!UBERON:0001285;2.16e-07;15!UBERON:0007684;2.16e-07;15!UBERON:0004573;3.67e-07;33!UBERON:0004571;3.67e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001135,6.27e-12,15;UBERON:0004237,1.09e-09,10;UBERON:0004695,1.09e-09,10;UBERON:0002111,1.09e-09,10;UBERON:0004178,1.09e-09,10;UBERON:0004810,1.76e-09,10;UBERON:0000486,4.68e-09,83;UBERON:0004573,5.88e-08,33;UBERON:0004571,5.88e-08,33;UBERON:0001949,5.91e-08,3;UBERON:0001637,1.02e-07,42;UBERON:0003509,1.02e-07,42;UBERON:0004572,1.02e-07,42;UBERON:0004211,1.39e-07,15;UBERON:0009773,1.39e-07,15;UBERON:0001231,1.39e-07,15;UBERON:0001285,1.39e-07,15;UBERON:0007684,1.39e-07,15;UBERON:0004208,1.39e-07,15;UBERON:0007503,4.83e-07,78;UBERON:0006555,5.06e-07,16;UBERON:0004819,5.06e-07,16;UBERON:0002385,7.43e-07,64;UBERON:0001015,7.43e-07,64;UBERON:0000383,7.43e-07,64 | |||
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| |||
|short_description=p4@PGAM1 | |||
}} |
Revision as of 15:14, 10 September 2013
Short description: | p4@PGAM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PGAM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 134bp_to_uc010qov.1_5end |
EntrezGene: | PGAM1 |
HGNC: | 8888 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.17e-20 | 250 |
mesodermal cell | 6.33e-15 | 121 |
mesothelial cell | 1.03e-12 | 19 |
embryonic stem cell | 1.48e-11 | 5 |
vascular associated smooth muscle cell | 2.88e-11 | 32 |
epithelial cell | 3.11e-11 | 253 |
smooth muscle cell | 1.08e-09 | 43 |
smooth muscle myoblast | 1.08e-09 | 43 |
aortic smooth muscle cell | 1.09e-09 | 10 |
kidney tubule cell | 1.76e-09 | 10 |
nephron tubule epithelial cell | 1.76e-09 | 10 |
electrically responsive cell | 9.99e-09 | 61 |
electrically active cell | 9.99e-09 | 61 |
epithelial cell of Malassez | 2.14e-08 | 3 |
kidney cell | 3.93e-08 | 17 |
kidney epithelial cell | 3.93e-08 | 17 |
gingival epithelial cell | 5.91e-08 | 3 |
lining cell | 8.73e-08 | 58 |
barrier cell | 8.73e-08 | 58 |
epithelial cell of nephron | 1.39e-07 | 15 |
muscle precursor cell | 4.99e-07 | 58 |
myoblast | 4.99e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.99e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
smooth muscle tissue | 6.27e-12 | 15 |
blood vessel smooth muscle | 1.09e-09 | 10 |
arterial system smooth muscle | 1.09e-09 | 10 |
artery smooth muscle tissue | 1.09e-09 | 10 |
aorta smooth muscle tissue | 1.09e-09 | 10 |
nephron tubule epithelium | 1.76e-09 | 10 |
multilaminar epithelium | 4.68e-09 | 83 |
systemic artery | 5.88e-08 | 33 |
systemic arterial system | 5.88e-08 | 33 |
gingival epithelium | 5.91e-08 | 3 |
artery | 1.02e-07 | 42 |
arterial blood vessel | 1.02e-07 | 42 |
arterial system | 1.02e-07 | 42 |
nephron epithelium | 1.39e-07 | 15 |
renal tubule | 1.39e-07 | 15 |
nephron tubule | 1.39e-07 | 15 |
nephron | 1.39e-07 | 15 |
uriniferous tubule | 1.39e-07 | 15 |
nephrogenic mesenchyme | 1.39e-07 | 15 |
epithelial vesicle | 4.83e-07 | 78 |
excretory tube | 5.06e-07 | 16 |
kidney epithelium | 5.06e-07 | 16 |
muscle tissue | 7.43e-07 | 64 |
musculature | 7.43e-07 | 64 |
musculature of body | 7.43e-07 | 64 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.