FFCP PHASE1:Hg19::chr12:114846539..114846570,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000528549,uc001tvs.1_5end|description=CAGE_peak_1_at_ENST00000528549_5end,CAGE_peak_1_at_uc001tvs.1_5end|id=chr12:114846539..114846570,+|ontology_enrichment_celltype=CL:0002620!2.94e-21!23;CL:0000057!1.95e-17!75;CL:0000055!1.30e-12!180;CL:0002334!1.12e-11!12;CL:0002494!1.25e-11!16;CL:0000569!7.92e-08!4;CL:0000011!7.92e-08!4;CL:0002570!1.02e-07!8;CL:0002548!1.69e-07!6;CL:0002580!7.42e-07!3|ontology_enrichment_celltype_v019=CL:0002620;8.56e-25;23!CL:0002334;8.33e-12;12!CL:0002580;5.64e-10;3!CL:0000057;7.62e-09;73!CL:0002598;1.11e-07;2!CL:0002600;2.04e-07;2!CL:0002617;4.02e-07;2|ontology_enrichment_celltype_v019_2=CL:0002620,9.81e-25,23;CL:0000057,8.46e-18,76;CL:0002334,6.91e-12,12;CL:0002580,3.83e-10,3;CL:0002598,9.91e-08,2;CL:0002600,1.61e-07,2;CL:0002617,4.28e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!5.80e-11!5;DOID:450!5.80e-11!5;DOID:66!5.80e-11!5;DOID:423!5.80e-11!5;DOID:0080000!5.80e-11!5;DOID:11722!5.80e-11!5|ontology_enrichment_disease_v019=DOID:17;6.61e-17;5!DOID:450;6.61e-17;5!DOID:66;6.61e-17;5!DOID:423;6.61e-17;5!DOID:0080000;6.61e-17;5!DOID:11722;6.61e-17;5|ontology_enrichment_disease_v019_2=DOID:17,8.86e-17,5;DOID:450,8.86e-17,5;DOID:66,8.86e-17,5;DOID:423,8.86e-17,5;DOID:0080000,8.86e-17,5;DOID:11722,8.86e-17,5|ontology_enrichment_uberon=UBERON:0007100!2.21e-21!27;UBERON:0000948!1.08e-17!24;UBERON:0005498!1.08e-17!24;UBERON:0004140!1.08e-17!24;UBERON:0009881!1.08e-17!24;UBERON:0004141!1.08e-17!24;UBERON:0003084!1.08e-17!24;UBERON:0007005!1.08e-17!24;UBERON:0004139!1.08e-17!24;UBERON:0004291!1.08e-17!24;UBERON:0002199!3.59e-12!45;UBERON:0002416!3.59e-12!45;UBERON:0002097!1.68e-11!40;UBERON:0003103!1.29e-10!69;UBERON:0003102!5.93e-08!95|ontology_enrichment_uberon_v019=UBERON:0002097;7.12e-11;41!UBERON:0002199;5.82e-10;46!UBERON:0002416;5.82e-10;46!UBERON:0005178;4.23e-08;34!UBERON:0002224;4.23e-08;34!UBERON:0005181;6.94e-08;35!UBERON:0003102;7.03e-08;50!UBERON:0000310;1.55e-07;10!UBERON:0000948;1.79e-07;22!UBERON:0007196;3.65e-07;15!UBERON:0001558;3.65e-07;15!UBERON:0000915;6.94e-07;52!UBERON:0001443;8.08e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.42e-14,41;UBERON:0002199,5.58e-14,46;UBERON:0002416,5.58e-14,46;UBERON:0000915,1.49e-11,52;UBERON:0005178,6.03e-09,34;UBERON:0002224,6.03e-09,34;UBERON:0005181,1.26e-08,35;UBERON:0000948,1.47e-08,24;UBERON:0005498,1.47e-08,24;UBERON:0004140,1.47e-08,24;UBERON:0009881,1.47e-08,24;UBERON:0004141,1.47e-08,24;UBERON:0003084,1.47e-08,24;UBERON:0007005,1.47e-08,24;UBERON:0004139,1.47e-08,24;UBERON:0004291,1.47e-08,24;UBERON:0000310,1.33e-07,10;UBERON:0007100,1.97e-07,27;UBERON:0007196,3.02e-07,15;UBERON:0001558,3.02e-07,15;UBERON:0001443,7.06e-07,11;UBERON:0003102,7.28e-07,99|phase1_expression=2.54349730978779,2.35510576280081,0,2.00146596706261,0,0,0,0,0,3.44027511102112,0,0,0,0,0,0.672325146451775,2.41077811209591,0.730310090387373,1.95173119516203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.383587685530591,0.361439152384566,0,0.289693037921647,0,0,0.0945348171640679,0,0.087834785693126,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,2.96001058100592,1.24484414159907,1.21239604862719,0.653847612453835,0,0,0,0,0,3.88566569434683,1.17434498643765,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,3.04962380671065,3.20336083227851,6.14602513362729,5.10154863343484,6.49230934202165,0,0.558350568994769,1.85653965465393,4.48210223741514,6.81571190459109,6.25939310767636,0,3.19508633264953,4.43309232201617,5.25637836162512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,1.30294473717494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,0,0,0,1.10621501125022,10.4260337361699,0,0,0,0,0,0,0,0,1.98486246255021,2.60885354589706,5.61320188866147,0,4.09365799253363,0,0,1.69630663182921,0.355123450626254,0.739144404124282,5.19254429183621,1.74315567689939,0,0,0,2.18147451512753,0.910455840033585,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26690225624989,0,0,0,0,0,0,0.154048617114644,0,0,0.322260734604821,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62975140884935,3.42351190427136,0,0,0,0,0,0,0,0,1.95053495635836,0,0,0,0,2.26016233240486,0,0,0,2.89387767133344,4.59126326432643,0,0,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0,0,0,0,2.7301702225266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000528549,uc001tvs.1_5end | |||
|description=CAGE_peak_1_at_ENST00000528549_5end,CAGE_peak_1_at_uc001tvs.1_5end | |||
|id=chr12:114846539..114846570,+ | |||
|ontology_enrichment_celltype=CL:0002620!2.94e-21!23;CL:0000057!1.95e-17!75;CL:0000055!1.30e-12!180;CL:0002334!1.12e-11!12;CL:0002494!1.25e-11!16;CL:0000569!7.92e-08!4;CL:0000011!7.92e-08!4;CL:0002570!1.02e-07!8;CL:0002548!1.69e-07!6;CL:0002580!7.42e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.56e-25;23!CL:0002334;8.33e-12;12!CL:0002580;5.64e-10;3!CL:0000057;7.62e-09;73!CL:0002598;1.11e-07;2!CL:0002600;2.04e-07;2!CL:0002617;4.02e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,9.81e-25,23;CL:0000057,8.46e-18,76;CL:0002334,6.91e-12,12;CL:0002580,3.83e-10,3;CL:0002598,9.91e-08,2;CL:0002600,1.61e-07,2;CL:0002617,4.28e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!5.80e-11!5;DOID:450!5.80e-11!5;DOID:66!5.80e-11!5;DOID:423!5.80e-11!5;DOID:0080000!5.80e-11!5;DOID:11722!5.80e-11!5 | |||
|ontology_enrichment_disease_v019=DOID:17;6.61e-17;5!DOID:450;6.61e-17;5!DOID:66;6.61e-17;5!DOID:423;6.61e-17;5!DOID:0080000;6.61e-17;5!DOID:11722;6.61e-17;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,8.86e-17,5;DOID:450,8.86e-17,5;DOID:66,8.86e-17,5;DOID:423,8.86e-17,5;DOID:0080000,8.86e-17,5;DOID:11722,8.86e-17,5 | |||
|ontology_enrichment_uberon=UBERON:0007100!2.21e-21!27;UBERON:0000948!1.08e-17!24;UBERON:0005498!1.08e-17!24;UBERON:0004140!1.08e-17!24;UBERON:0009881!1.08e-17!24;UBERON:0004141!1.08e-17!24;UBERON:0003084!1.08e-17!24;UBERON:0007005!1.08e-17!24;UBERON:0004139!1.08e-17!24;UBERON:0004291!1.08e-17!24;UBERON:0002199!3.59e-12!45;UBERON:0002416!3.59e-12!45;UBERON:0002097!1.68e-11!40;UBERON:0003103!1.29e-10!69;UBERON:0003102!5.93e-08!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;7.12e-11;41!UBERON:0002199;5.82e-10;46!UBERON:0002416;5.82e-10;46!UBERON:0005178;4.23e-08;34!UBERON:0002224;4.23e-08;34!UBERON:0005181;6.94e-08;35!UBERON:0003102;7.03e-08;50!UBERON:0000310;1.55e-07;10!UBERON:0000948;1.79e-07;22!UBERON:0007196;3.65e-07;15!UBERON:0001558;3.65e-07;15!UBERON:0000915;6.94e-07;52!UBERON:0001443;8.08e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.42e-14,41;UBERON:0002199,5.58e-14,46;UBERON:0002416,5.58e-14,46;UBERON:0000915,1.49e-11,52;UBERON:0005178,6.03e-09,34;UBERON:0002224,6.03e-09,34;UBERON:0005181,1.26e-08,35;UBERON:0000948,1.47e-08,24;UBERON:0005498,1.47e-08,24;UBERON:0004140,1.47e-08,24;UBERON:0009881,1.47e-08,24;UBERON:0004141,1.47e-08,24;UBERON:0003084,1.47e-08,24;UBERON:0007005,1.47e-08,24;UBERON:0004139,1.47e-08,24;UBERON:0004291,1.47e-08,24;UBERON:0000310,1.33e-07,10;UBERON:0007100,1.97e-07,27;UBERON:0007196,3.02e-07,15;UBERON:0001558,3.02e-07,15;UBERON:0001443,7.06e-07,11;UBERON:0003102,7.28e-07,99 | |||
|phase1_expression=2.54349730978779,2.35510576280081,0,2.00146596706261,0,0,0,0,0,3.44027511102112,0,0,0,0,0,0.672325146451775,2.41077811209591,0.730310090387373,1.95173119516203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.383587685530591,0.361439152384566,0,0.289693037921647,0,0,0.0945348171640679,0,0.087834785693126,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,2.96001058100592,1.24484414159907,1.21239604862719,0.653847612453835,0,0,0,0,0,3.88566569434683,1.17434498643765,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,3.04962380671065,3.20336083227851,6.14602513362729,5.10154863343484,6.49230934202165,0,0.558350568994769,1.85653965465393,4.48210223741514,6.81571190459109,6.25939310767636,0,3.19508633264953,4.43309232201617,5.25637836162512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,1.30294473717494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,0,0,0,1.10621501125022,10.4260337361699,0,0,0,0,0,0,0,0,1.98486246255021,2.60885354589706,5.61320188866147,0,4.09365799253363,0,0,1.69630663182921,0.355123450626254,0.739144404124282,5.19254429183621,1.74315567689939,0,0,0,2.18147451512753,0.910455840033585,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26690225624989,0,0,0,0,0,0,0.154048617114644,0,0,0.322260734604821,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62975140884935,3.42351190427136,0,0,0,0,0,0,0,0,1.95053495635836,0,0,0,0,2.26016233240486,0,0,0,2.89387767133344,4.59126326432643,0,0,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0,0,0,0,2.7301702225266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.87944129886466,0,0,0,1.06687918137261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0721064139948,0.229160424011684,0.717873024576814,0.399358000997982,0.429226048136571,0.446342914883745,1.74677028465488,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31040978959853,4.40172054279065,2.48543433208317,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0.74627401443437,0.701139929541673,1.10961172300523,0,0,0,0.915360273587694,2.87338755150154,2.95330681107283,0.443565449968902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03018711554838,2.35724642136143,0,0,0,0,0,0,0,0,1.23520578864389,0.657852148736121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.537254819445,0,0,0,12.754495206101,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98484471355718,0,0,0,0,0,0,3.193285325855,0,0,0,0,0,0,1.96232732126285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,1.94284397223656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.952257725854961,0,0.0620747142958579,0,0,0,0,0,0,0.358611026963382,2.66128285236811,0,0,3.8614456457388,0,4.69281884806909,0,0,0,0,0 | |||
|short_description=p1@ENST00000528549,p1@uc001tvs.1 | |||
}} |
Revision as of 21:02, 10 September 2013
Short description: | p1@ENST00000528549, p1@uc001tvs.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000528549_5end, CAGE_peak_1_at_uc001tvs.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000528549, uc001tvs.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 9.81e-25 | 23 |
fibroblast | 8.46e-18 | 76 |
preadipocyte | 6.91e-12 | 12 |
preadipocyte of the breast | 3.83e-10 | 3 |
bronchial smooth muscle cell | 9.91e-08 | 2 |
smooth muscle cell of trachea | 1.61e-07 | 2 |
adipocyte of breast | 4.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.42e-14 | 41 |
integument | 5.58e-14 | 46 |
integumental system | 5.58e-14 | 46 |
thoracic segment of trunk | 1.49e-11 | 52 |
thoracic cavity element | 6.03e-09 | 34 |
thoracic cavity | 6.03e-09 | 34 |
thoracic segment organ | 1.26e-08 | 35 |
heart | 1.47e-08 | 24 |
primitive heart tube | 1.47e-08 | 24 |
primary heart field | 1.47e-08 | 24 |
anterior lateral plate mesoderm | 1.47e-08 | 24 |
heart tube | 1.47e-08 | 24 |
heart primordium | 1.47e-08 | 24 |
cardiac mesoderm | 1.47e-08 | 24 |
cardiogenic plate | 1.47e-08 | 24 |
heart rudiment | 1.47e-08 | 24 |
breast | 1.33e-07 | 10 |
primary circulatory organ | 1.97e-07 | 27 |
tracheobronchial tree | 3.02e-07 | 15 |
lower respiratory tract | 3.02e-07 | 15 |
chest | 7.06e-07 | 11 |
surface structure | 7.28e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 8.86e-17 | 5 |
myotonic disease | 8.86e-17 | 5 |
muscle tissue disease | 8.86e-17 | 5 |
myopathy | 8.86e-17 | 5 |
muscular disease | 8.86e-17 | 5 |
myotonic dystrophy | 8.86e-17 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.