FFCP PHASE1:Hg19::chr13:38443944..38443955,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7223|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12336|TSSclassifier=S|UniProt=Q9UBN4,Q3KR50|association_with_transcript=-5bp_to_ENST00000338947,ENST00000355779,ENST00000358477,ENST00000379673,ENST00000379681,NM_001135955,NM_001135956,NM_001135957,NM_001135958,NM_003306,NM_016179,uc001uws.2,uc001uwt.2,uc010abw.2,uc010abx.2,uc010aby.2,uc010tey.1_5end|description=CAGE_peak_3_at_TRPC4_5end|id=chr13:38443944..38443955,-|ontology_enrichment_celltype=CL:0000055!4.25e-08!180;CL:0000393!1.78e-07!60;CL:0000211!1.78e-07!60;CL:0002620!4.45e-07!23|ontology_enrichment_celltype_v019=CL:0000222;5.20e-08;1!CL:0002574;5.20e-08;1!CL:0002620;4.53e-07;23|ontology_enrichment_celltype_v019_2=CL:0002574,2.52e-08,1;CL:0002620,5.37e-07,23|ontology_enrichment_development_v019=UBERON:0006242;5.20e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2513;5.20e-08;1|ontology_enrichment_disease_v019_2=DOID:2513,5.05e-08,1|ontology_enrichment_uberon=UBERON:0007023!7.98e-15!115;UBERON:0001869!2.26e-14!32;UBERON:0002020!2.76e-14!34;UBERON:0003528!2.76e-14!34;UBERON:0001893!4.32e-14!34;UBERON:0002791!1.78e-13!33;UBERON:0001017!2.03e-13!82;UBERON:0001950!3.07e-13!20;UBERON:0002619!4.05e-13!22;UBERON:0002616!4.40e-13!59;UBERON:0005743!4.46e-13!86;UBERON:0001049!1.55e-12!57;UBERON:0005068!1.55e-12!57;UBERON:0006241!1.55e-12!57;UBERON:0007135!1.55e-12!57;UBERON:0000073!5.28e-12!94;UBERON:0001016!5.28e-12!94;UBERON:0000956!6.20e-12!25;UBERON:0000203!6.20e-12!25;UBERON:0002780!3.02e-11!41;UBERON:0001890!3.02e-11!41;UBERON:0006240!3.02e-11!41;UBERON:0000475!4.07e-11!365;UBERON:0003080!8.70e-11!42;UBERON:0000955!3.07e-10!69;UBERON:0006238!3.07e-10!69;UBERON:0003075!3.24e-10!86;UBERON:0007284!3.24e-10!86;UBERON:0002346!4.84e-10!90;UBERON:0000477!8.70e-10!286;UBERON:0000481!1.13e-09!347;UBERON:0000119!2.83e-09!312;UBERON:0000483!3.38e-09!309;UBERON:0000025!4.03e-09!194;UBERON:0004111!4.88e-09!241;UBERON:0001871!4.90e-09!7;UBERON:0000468!1.55e-07!659;UBERON:0002385!3.77e-07!63;UBERON:0001015!3.77e-07!63;UBERON:0000383!3.77e-07!63;UBERON:0000200!5.43e-07!6;UBERON:0003056!6.30e-07!61|ontology_enrichment_uberon_v019=UBERON:0001871;3.88e-09;6!UBERON:0005795;1.83e-08;1!UBERON:0006834;1.83e-08;1!UBERON:0002171;5.20e-08;1!UBERON:0006518;5.20e-08;1!UBERON:0008949;5.20e-08;1!UBERON:0000101;5.20e-08;1!UBERON:0002167;5.20e-08;1!UBERON:0001950;7.31e-08;20!UBERON:0002619;3.70e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0001871,3.85e-09,6;UBERON:0006834,2.04e-08,1;UBERON:0002171,5.40e-08,1;UBERON:0006518,5.40e-08,1;UBERON:0008949,5.40e-08,1;UBERON:0000101,5.40e-08,1;UBERON:0002167,5.40e-08,1;UBERON:0001950,8.70e-08,20;UBERON:0002619,4.34e-07,22|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0.602694528023977,0,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0.560677600142307,0,0.24666754841716,0.311211035399766,0.67355336034844,0.490385709340376,0.151357427644931,0,0,0,0,0,0,0,0,0,0.122834317311768,0,1.18800285728205,0.494533858557114,0,0,0.168336113954066,0.125118519871964,0,0,0,0.751190294532984,0.113432183160021,0.89694817844431,0.640672166455702,0.211931901159562,0.900273288253207,0.92747276314595,1.03056216018252,0.930584281657949,1.0126579934476,0.194874010322397,1.26216887122057,0.736399189138395,1.13152239773168,1.77504796258307,0.705264687593482,0,0,0,0,0.975789649036763,1.19276791489337,0.464775771478074,1.45125477021519,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36669142910475,0.258543431515556,0,0,0.531876233169741,0,0.257207374262142,0,0.266422179016099,0.857867961948885,0,0,0.325736184293735,1.06617584622764,0,0,0,0.299918973546171,0,0,0,0,0,0,0.289562613335158,0.410952645100767,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0.542530047399471,0,0.356857977594324,0.157702415033935,0,0,0,0,0,0,1.65078867489357,0,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.246381468041427,0,0.348631135379878,0,0,0,0.574072240823034,0,0.131124414959424,0,0.15403067420883,0,0,0.316654886678627,0,0,0.431831832204279,0,0.270946437543853,0,0,0,0.447749509444357,0,0,0.769350375349168,0,0,0.721287081534056,0,0,0,0,0,0.193341436584244,0,0,0.137836572484531,0.429680979473094,0.435050081742686,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286249773483982,0.744316738719335,1.2655176988749,0.571890581771475,0.255897791311334,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7223 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12336 | |||
|TSSclassifier=S | |||
|UniProt=Q9UBN4,Q3KR50 | |||
|association_with_transcript=-5bp_to_ENST00000338947,ENST00000355779,ENST00000358477,ENST00000379673,ENST00000379681,NM_001135955,NM_001135956,NM_001135957,NM_001135958,NM_003306,NM_016179,uc001uws.2,uc001uwt.2,uc010abw.2,uc010abx.2,uc010aby.2,uc010tey.1_5end | |||
|description=CAGE_peak_3_at_TRPC4_5end | |||
|id=chr13:38443944..38443955,- | |||
|ontology_enrichment_celltype=CL:0000055!4.25e-08!180;CL:0000393!1.78e-07!60;CL:0000211!1.78e-07!60;CL:0002620!4.45e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000222;5.20e-08;1!CL:0002574;5.20e-08;1!CL:0002620;4.53e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002574,2.52e-08,1;CL:0002620,5.37e-07,23 | |||
|ontology_enrichment_development_v019=UBERON:0006242;5.20e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2513;5.20e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,5.05e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.98e-15!115;UBERON:0001869!2.26e-14!32;UBERON:0002020!2.76e-14!34;UBERON:0003528!2.76e-14!34;UBERON:0001893!4.32e-14!34;UBERON:0002791!1.78e-13!33;UBERON:0001017!2.03e-13!82;UBERON:0001950!3.07e-13!20;UBERON:0002619!4.05e-13!22;UBERON:0002616!4.40e-13!59;UBERON:0005743!4.46e-13!86;UBERON:0001049!1.55e-12!57;UBERON:0005068!1.55e-12!57;UBERON:0006241!1.55e-12!57;UBERON:0007135!1.55e-12!57;UBERON:0000073!5.28e-12!94;UBERON:0001016!5.28e-12!94;UBERON:0000956!6.20e-12!25;UBERON:0000203!6.20e-12!25;UBERON:0002780!3.02e-11!41;UBERON:0001890!3.02e-11!41;UBERON:0006240!3.02e-11!41;UBERON:0000475!4.07e-11!365;UBERON:0003080!8.70e-11!42;UBERON:0000955!3.07e-10!69;UBERON:0006238!3.07e-10!69;UBERON:0003075!3.24e-10!86;UBERON:0007284!3.24e-10!86;UBERON:0002346!4.84e-10!90;UBERON:0000477!8.70e-10!286;UBERON:0000481!1.13e-09!347;UBERON:0000119!2.83e-09!312;UBERON:0000483!3.38e-09!309;UBERON:0000025!4.03e-09!194;UBERON:0004111!4.88e-09!241;UBERON:0001871!4.90e-09!7;UBERON:0000468!1.55e-07!659;UBERON:0002385!3.77e-07!63;UBERON:0001015!3.77e-07!63;UBERON:0000383!3.77e-07!63;UBERON:0000200!5.43e-07!6;UBERON:0003056!6.30e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001871;3.88e-09;6!UBERON:0005795;1.83e-08;1!UBERON:0006834;1.83e-08;1!UBERON:0002171;5.20e-08;1!UBERON:0006518;5.20e-08;1!UBERON:0008949;5.20e-08;1!UBERON:0000101;5.20e-08;1!UBERON:0002167;5.20e-08;1!UBERON:0001950;7.31e-08;20!UBERON:0002619;3.70e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001871,3.85e-09,6;UBERON:0006834,2.04e-08,1;UBERON:0002171,5.40e-08,1;UBERON:0006518,5.40e-08,1;UBERON:0008949,5.40e-08,1;UBERON:0000101,5.40e-08,1;UBERON:0002167,5.40e-08,1;UBERON:0001950,8.70e-08,20;UBERON:0002619,4.34e-07,22 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0.602694528023977,0,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0.560677600142307,0,0.24666754841716,0.311211035399766,0.67355336034844,0.490385709340376,0.151357427644931,0,0,0,0,0,0,0,0,0,0.122834317311768,0,1.18800285728205,0.494533858557114,0,0,0.168336113954066,0.125118519871964,0,0,0,0.751190294532984,0.113432183160021,0.89694817844431,0.640672166455702,0.211931901159562,0.900273288253207,0.92747276314595,1.03056216018252,0.930584281657949,1.0126579934476,0.194874010322397,1.26216887122057,0.736399189138395,1.13152239773168,1.77504796258307,0.705264687593482,0,0,0,0,0.975789649036763,1.19276791489337,0.464775771478074,1.45125477021519,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36669142910475,0.258543431515556,0,0,0.531876233169741,0,0.257207374262142,0,0.266422179016099,0.857867961948885,0,0,0.325736184293735,1.06617584622764,0,0,0,0.299918973546171,0,0,0,0,0,0,0.289562613335158,0.410952645100767,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0.542530047399471,0,0.356857977594324,0.157702415033935,0,0,0,0,0,0,1.65078867489357,0,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.246381468041427,0,0.348631135379878,0,0,0,0.574072240823034,0,0.131124414959424,0,0.15403067420883,0,0,0.316654886678627,0,0,0.431831832204279,0,0.270946437543853,0,0,0,0.447749509444357,0,0,0.769350375349168,0,0,0.721287081534056,0,0,0,0,0,0.193341436584244,0,0,0.137836572484531,0.429680979473094,0.435050081742686,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286249773483982,0.744316738719335,1.2655176988749,0.571890581771475,0.255897791311334,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0,0,0,0,0.487426979262569,0,0.818999468447914,0.141405431953713,0,0,0,0,0,1.9676842561399,0.202910376962704,0.30982349809975,0,0.430234056612155,0.0982490410131212,0.7133421029625,0.354761064070598,0.422215270595328,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.562677665642051,0,0,0,0,0.552567831062295,0.251932747854276,0,0,1.24415835064723,0.0898683511473268,0,0,0.986434056369336,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0.844175070377856,0,0.221158519862449,0,0.658156191461918,0,0,2.5393585306253,0,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0.394584402849391,1.20990716048664,1.53036380815245,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0.50648636764703,0,0.0801588202515337,1.06726497369676,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0.558564802544508,0.687481272035051,0,0,0,0,0.134366944973453,0.360299883542404,0,0,0,0,0,0,0,0.544813624446302,1.44677833618517,0.550157746388935,0.83088067605837,0,0,0.182248669974074,0,0.236417121897595,0.314727528809989,0,0,0,0,0.662091970365432,0,0.542999601753713,0,0.326587360109409,0,0,0.170388021785422,0,0,0,0.258565912723101,0.39669780522807,0,0,0.854299300541557,0.157204305099666,1.24271716604159,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0,2.65820453990096,1.09823638411767,0.751145584238999,0,0.221858103073705,0.310482014706917,0,0,0.151649117541648,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0.150257608997218,0,0,0.363697318405119,0,0,0.398095888698616,0,0,0,1.26184898228651,0.192619830407303,0,0,0.453411851024545,0,0,0,0,0,0.353378291891762,0.192914038270915,0,0,0.345430341731199,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,1.27201740261367,0,0,0,0,0.770750701157514,0,0,0.615349092722265,1.00828678488687,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0.902523940191087,0,0,0,0.818859587550484,0,0.337687923091973,0,0.620060389503552,0.253663240775627,0.546974809018219,0,0,1.23109871051734,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0.394636641377094,0,0,1.33438257845874,0.628462359664008,0,0,0,0,0,0,0.581207126840626,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0.118920090777569,0,0,0,0.308696632431779,0,0,0.735444965261716,0.235676547101626,0.196308467114945,0.297046400327086,0.4226557275834,0.679708458751268,0.0939839179798536,0.257831551894309,0,0,0,0,0,0,0,0,0.203974470572744,0.872701380680755,0,0,0,0,0,0,1.01358800809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| |||
|short_description=p3@TRPC4 | |||
}} |
Revision as of 02:10, 11 September 2013
Short description: | p3@TRPC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TRPC4_5end |
Coexpression cluster: | NA |
Association with transcript: | -5bp_to_ENST00000338947, ENST00000355779, ENST00000358477, ENST00000379673, ENST00000379681, NM_001135955, NM_001135956, NM_001135957, NM_001135958, NM_003306, NM_016179, uc001uws.2, uc001uwt.2, uc010abw.2, uc010abx.2, uc010aby.2, uc010tey.1_5end |
EntrezGene: | TRPC4 |
HGNC: | 12336 |
UniProt: | Q9UBN4Q3KR50 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stromal cell of pancreas | 2.52e-08 | 1 |
skin fibroblast | 5.37e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
temporal lobe | 3.85e-09 | 6 |
uterus or analog | 2.04e-08 | 1 |
lower lobe of right lung | 5.40e-08 | 1 |
right lung lobe | 5.40e-08 | 1 |
lower lobe of lung | 5.40e-08 | 1 |
lobe of lung | 5.40e-08 | 1 |
right lung | 5.40e-08 | 1 |
neocortex | 8.70e-08 | 20 |
regional part of cerebral cortex | 4.34e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 5.05e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.