FFCP PHASE1:Hg19::chr15:93425910..93425975,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1106 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1917 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000553829,ENST00000557682_5end | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_2_at_CHD2_5end | |||
|id=chr15:93425910..93425975,+ | |||
|ontology_enrichment_celltype=CL:0000236!1.33e-07!14;CL:0000945!5.82e-07!24;CL:0000826!5.82e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000236;2.14e-07;13!CL:0000945;4.20e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.33e-07,14;CL:0000945,5.82e-07,24;CL:0000826,5.82e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001893;5.40e-10;34!UBERON:0003528;7.10e-10;34!UBERON:0002020;7.10e-10;34!UBERON:0001869;8.63e-10;32!UBERON:0002791;1.03e-09;32!UBERON:0000956;1.21e-09;25!UBERON:0000203;1.21e-09;25!UBERON:0000073;1.77e-09;53!UBERON:0002616;1.77e-09;53!UBERON:0002619;9.08e-09;22!UBERON:0002780;1.37e-08;41!UBERON:0001890;1.37e-08;41!UBERON:0001950;3.83e-08;20 | |||
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| |||
|short_description=p2@CHD2 | |||
}} |
Revision as of 08:59, 11 September 2013
Short description: | p2@CHD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CHD2_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000553829, ENST00000557682_5end |
EntrezGene: | CHD2 |
HGNC: | 1917 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.33e-07 | 14 |
lymphocyte of B lineage | 5.82e-07 | 24 |
pro-B cell | 5.82e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.33e-23 | 114 |
neural tube | 4.26e-16 | 56 |
neural rod | 4.26e-16 | 56 |
future spinal cord | 4.26e-16 | 56 |
neural keel | 4.26e-16 | 56 |
regional part of nervous system | 1.01e-14 | 53 |
regional part of brain | 1.01e-14 | 53 |
central nervous system | 4.48e-14 | 81 |
neurectoderm | 1.35e-13 | 86 |
neural plate | 6.35e-13 | 82 |
presumptive neural plate | 6.35e-13 | 82 |
nervous system | 7.46e-13 | 89 |
brain grey matter | 1.19e-11 | 34 |
gray matter | 1.19e-11 | 34 |
telencephalon | 1.67e-11 | 34 |
regional part of forebrain | 3.15e-11 | 41 |
forebrain | 3.15e-11 | 41 |
anterior neural tube | 3.15e-11 | 41 |
future forebrain | 3.15e-11 | 41 |
cerebral hemisphere | 5.73e-11 | 32 |
regional part of telencephalon | 8.58e-11 | 32 |
brain | 8.51e-10 | 68 |
future brain | 8.51e-10 | 68 |
cerebral cortex | 9.71e-10 | 25 |
pallium | 9.71e-10 | 25 |
structure with developmental contribution from neural crest | 6.83e-09 | 132 |
regional part of cerebral cortex | 7.45e-09 | 22 |
pre-chordal neural plate | 1.18e-08 | 61 |
neocortex | 2.87e-08 | 20 |
ecto-epithelium | 1.72e-07 | 104 |
ectoderm-derived structure | 3.73e-07 | 171 |
ectoderm | 3.73e-07 | 171 |
presumptive ectoderm | 3.73e-07 | 171 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.