FFCP PHASE1:Hg19::chr16:19702589..19702620,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57020|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24641|TSSclassifier=W|UniProt=|association_with_transcript=-157bp_to_ENST00000542027_5end|coexpression_cluster_id=C67|description=CAGE_peak_3_at_C16orf62_5end|id=chr16:19702589..19702620,+|ontology_enrichment_celltype=CL:0002057!3.92e-12!42;CL:0000115!7.22e-12!35;CL:0002194!1.27e-11!63;CL:0000576!1.27e-11!63;CL:0000040!1.27e-11!63;CL:0000559!1.27e-11!63;CL:0002009!7.08e-11!65;CL:0000766!9.78e-11!76;CL:0000860!1.23e-10!45;CL:0000839!2.41e-10!70;CL:0000557!5.09e-10!71;CL:0002078!6.98e-10!44;CL:0002139!2.17e-07!24|ontology_enrichment_celltype_v019=CL:0000115;1.43e-09;36!CL:0000576;5.09e-09;48!CL:0002619;1.28e-08;3!CL:0000875;2.12e-08;3!CL:0002396;2.12e-08;3!CL:0002144;2.81e-08;3|ontology_enrichment_celltype_v019_2=CL:0002194,3.26e-12,59;CL:0000576,3.26e-12,59;CL:0000040,3.26e-12,59;CL:0000559,3.26e-12,59;CL:0002009,1.25e-11,61;CL:0000473,1.41e-11,48;CL:0000234,1.41e-11,48;CL:0000115,1.48e-11,36;CL:0000839,2.49e-10,66;CL:0000557,4.28e-10,67;CL:0000766,5.60e-10,72;CL:0002393,2.29e-09,9;CL:0002397,2.29e-09,9;CL:0000860,2.41e-09,42;CL:0002057,2.41e-09,42;CL:0002619,1.29e-08,3;CL:0002078,1.87e-08,45;CL:0000875,2.09e-08,3;CL:0002396,2.09e-08,3;CL:0002144,3.12e-08,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.31e-29!115;UBERON:0000062!2.67e-12!511;UBERON:0000467!7.24e-12!625;UBERON:0000480!9.49e-12!626;UBERON:0001049!3.61e-11!57;UBERON:0005068!3.61e-11!57;UBERON:0006241!3.61e-11!57;UBERON:0007135!3.61e-11!57;UBERON:0000468!6.35e-11!659;UBERON:0002405!1.78e-10!115;UBERON:0002193!1.58e-09!112;UBERON:0002616!1.74e-09!59;UBERON:0000477!3.14e-09!286;UBERON:0002371!3.54e-09!80;UBERON:0000922!1.89e-08!612;UBERON:0002020!2.11e-08!34;UBERON:0003528!2.11e-08!34;UBERON:0001017!2.42e-08!82;UBERON:0002050!2.65e-08!605;UBERON:0005423!2.65e-08!605;UBERON:0000955!2.79e-08!69;UBERON:0006238!2.79e-08!69;UBERON:0000923!4.59e-08!604;UBERON:0005291!4.59e-08!604;UBERON:0006598!4.59e-08!604;UBERON:0002532!4.59e-08!604;UBERON:0005743!6.53e-08!86;UBERON:0003080!7.53e-08!42;UBERON:0002791!7.55e-08!33;UBERON:0001474!1.14e-07!86;UBERON:0001893!2.00e-07!34;UBERON:0002390!2.44e-07!102;UBERON:0003061!2.44e-07!102;UBERON:0002780!3.16e-07!41;UBERON:0001890!3.16e-07!41;UBERON:0006240!3.16e-07!41;UBERON:0004111!6.99e-07!241;UBERON:0004765!8.57e-07!101;UBERON:0001434!8.57e-07!101;UBERON:0001869!9.43e-07!32|ontology_enrichment_uberon_v019=UBERON:0010523;2.81e-08;3!UBERON:0001915;2.81e-08;3!UBERON:0001982;2.81e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.46e-16,114;UBERON:0002405,2.32e-12,93;UBERON:0002193,1.30e-09,108;UBERON:0002371,2.88e-08,76;UBERON:0010523,3.12e-08,3;UBERON:0001915,3.12e-08,3;UBERON:0001982,3.12e-08,3;UBERON:0001474,2.76e-07,82;UBERON:0002390,7.97e-07,98;UBERON:0003061,7.97e-07,98;UBERON:0003887,8.15e-07,12|phase1_expression=0,0,0.281908808191942,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0.125542639594803,0,0,0,1.18009283054671,0.767658796194425,0.928896739896456,0,0,0,0,0,0,0,0,0.217010870715852,32.467743764789,13.9274276388161,33.4848237924443,0,0.755751887377619,0,0,0,0,1.43846196161075,0.768482119587302,2.12834006899727,0,0,0,0.376484679085209,0.272906150057846,0.449446968890169,0,1.60464513538047,0.639337125799041,0.329851300186716,1.19678194572979,0.852449501065388,0.580418477257168,1.13477044938228,1.24564449799115,1.00499466102697,2.08593167368081,1.95469960234605,0.605399502633369,0.736555271975129,1.26584954976354,3.80259515361495,4.46469029926591,2.30624510059213,0.22465726229299,0.150176892841506,0.16072558669708,9.4054205434612,8.95125047395906,7.67189445811463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0.993812036833525,0,0,0.56530794192401,0,0,0,0.775250277507987,0,1.00416183829401,6.0424397566372,6.0821768457481,8.05404789908959,0.367663080345869,0.81014194788176,0.535798369704479,0.673588117878509,0.563057402416611,0,0.949265659568129,0.366403487860815,0,0,0,0.496971951695318,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323745888736263,0.140450806702248,0,0,0.206651562351531,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828147600278907,0.505754070234305,0.241011029883482,0.110293972732394,0.653638332277218,0.71181185733329,0.674156540800822,0.196221465125346,0.38474715694639,6.64339909162183,2.80483547606892,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,5.34155856715973,6.48179717607255,6.84914948044554,0,0,0.738651018262192,0,0.743155811443641,0,0,0,0,0,0.383382679165211,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,2.35475277125258,0.87192013766656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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57020 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24641 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-157bp_to_ENST00000542027_5end | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_3_at_C16orf62_5end | |||
|id=chr16:19702589..19702620,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.92e-12!42;CL:0000115!7.22e-12!35;CL:0002194!1.27e-11!63;CL:0000576!1.27e-11!63;CL:0000040!1.27e-11!63;CL:0000559!1.27e-11!63;CL:0002009!7.08e-11!65;CL:0000766!9.78e-11!76;CL:0000860!1.23e-10!45;CL:0000839!2.41e-10!70;CL:0000557!5.09e-10!71;CL:0002078!6.98e-10!44;CL:0002139!2.17e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.43e-09;36!CL:0000576;5.09e-09;48!CL:0002619;1.28e-08;3!CL:0000875;2.12e-08;3!CL:0002396;2.12e-08;3!CL:0002144;2.81e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,3.26e-12,59;CL:0000576,3.26e-12,59;CL:0000040,3.26e-12,59;CL:0000559,3.26e-12,59;CL:0002009,1.25e-11,61;CL:0000473,1.41e-11,48;CL:0000234,1.41e-11,48;CL:0000115,1.48e-11,36;CL:0000839,2.49e-10,66;CL:0000557,4.28e-10,67;CL:0000766,5.60e-10,72;CL:0002393,2.29e-09,9;CL:0002397,2.29e-09,9;CL:0000860,2.41e-09,42;CL:0002057,2.41e-09,42;CL:0002619,1.29e-08,3;CL:0002078,1.87e-08,45;CL:0000875,2.09e-08,3;CL:0002396,2.09e-08,3;CL:0002144,3.12e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.31e-29!115;UBERON:0000062!2.67e-12!511;UBERON:0000467!7.24e-12!625;UBERON:0000480!9.49e-12!626;UBERON:0001049!3.61e-11!57;UBERON:0005068!3.61e-11!57;UBERON:0006241!3.61e-11!57;UBERON:0007135!3.61e-11!57;UBERON:0000468!6.35e-11!659;UBERON:0002405!1.78e-10!115;UBERON:0002193!1.58e-09!112;UBERON:0002616!1.74e-09!59;UBERON:0000477!3.14e-09!286;UBERON:0002371!3.54e-09!80;UBERON:0000922!1.89e-08!612;UBERON:0002020!2.11e-08!34;UBERON:0003528!2.11e-08!34;UBERON:0001017!2.42e-08!82;UBERON:0002050!2.65e-08!605;UBERON:0005423!2.65e-08!605;UBERON:0000955!2.79e-08!69;UBERON:0006238!2.79e-08!69;UBERON:0000923!4.59e-08!604;UBERON:0005291!4.59e-08!604;UBERON:0006598!4.59e-08!604;UBERON:0002532!4.59e-08!604;UBERON:0005743!6.53e-08!86;UBERON:0003080!7.53e-08!42;UBERON:0002791!7.55e-08!33;UBERON:0001474!1.14e-07!86;UBERON:0001893!2.00e-07!34;UBERON:0002390!2.44e-07!102;UBERON:0003061!2.44e-07!102;UBERON:0002780!3.16e-07!41;UBERON:0001890!3.16e-07!41;UBERON:0006240!3.16e-07!41;UBERON:0004111!6.99e-07!241;UBERON:0004765!8.57e-07!101;UBERON:0001434!8.57e-07!101;UBERON:0001869!9.43e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0010523;2.81e-08;3!UBERON:0001915;2.81e-08;3!UBERON:0001982;2.81e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.46e-16,114;UBERON:0002405,2.32e-12,93;UBERON:0002193,1.30e-09,108;UBERON:0002371,2.88e-08,76;UBERON:0010523,3.12e-08,3;UBERON:0001915,3.12e-08,3;UBERON:0001982,3.12e-08,3;UBERON:0001474,2.76e-07,82;UBERON:0002390,7.97e-07,98;UBERON:0003061,7.97e-07,98;UBERON:0003887,8.15e-07,12 | |||
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| |||
|short_description=p3@C16orf62 | |||
}} |
Revision as of 09:31, 11 September 2013
Short description: | p3@C16orf62 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_C16orf62_5end |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | -157bp_to_ENST00000542027_5end |
EntrezGene: | C16orf62 |
HGNC: | 24641 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 3.26e-12 | 59 |
monocyte | 3.26e-12 | 59 |
monoblast | 3.26e-12 | 59 |
promonocyte | 3.26e-12 | 59 |
macrophage dendritic cell progenitor | 1.25e-11 | 61 |
defensive cell | 1.41e-11 | 48 |
phagocyte | 1.41e-11 | 48 |
endothelial cell | 1.48e-11 | 36 |
myeloid lineage restricted progenitor cell | 2.49e-10 | 66 |
granulocyte monocyte progenitor cell | 4.28e-10 | 67 |
myeloid leukocyte | 5.60e-10 | 72 |
intermediate monocyte | 2.29e-09 | 9 |
CD14-positive, CD16-positive monocyte | 2.29e-09 | 9 |
classical monocyte | 2.41e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.41e-09 | 42 |
adult endothelial progenitor cell | 1.29e-08 | 3 |
meso-epithelial cell | 1.87e-08 | 45 |
non-classical monocyte | 2.09e-08 | 3 |
CD14-low, CD16-positive monocyte | 2.09e-08 | 3 |
capillary endothelial cell | 3.12e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.46e-16 | 114 |
immune system | 2.32e-12 | 93 |
hemolymphoid system | 1.30e-09 | 108 |
bone marrow | 2.88e-08 | 76 |
microcirculatory vessel | 3.12e-08 | 3 |
endothelium of capillary | 3.12e-08 | 3 |
capillary | 3.12e-08 | 3 |
bone element | 2.76e-07 | 82 |
hematopoietic system | 7.97e-07 | 98 |
blood island | 7.97e-07 | 98 |
intraembryonic coelom | 8.15e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.