FFCP PHASE1:Hg19::chr17:78234625..78234683,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57674|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14539|TSSclassifier=S|UniProt=Q9HCF4,D6RI12,C9JCP4|association_with_transcript=0bp_to_ENST00000319921,ENST00000456466,ENST00000508628,ENST00000558564,NM_020914,NM_020954,uc002jye.1,uc002jyf.2_5end|description=CAGE_peak_1_at_RNF213_5end|id=chr17:78234625..78234683,+|ontology_enrichment_celltype=CL:0000791!1.45e-08!18;CL:0000789!1.45e-08!18;CL:0002420!1.45e-08!18;CL:0002419!1.45e-08!18;CL:0000790!1.45e-08!18;CL:0000766!7.72e-08!76|ontology_enrichment_celltype_v019=CL:0000791;1.30e-08;18!CL:0000789;1.30e-08;18!CL:0002419;1.30e-08;18|ontology_enrichment_celltype_v019_2=CL:0000791,1.45e-08,18;CL:0000789,1.45e-08,18;CL:0002420,1.45e-08,18;CL:0002419,1.45e-08,18;CL:0000790,1.45e-08,18;CL:0000766,5.22e-08,72|ontology_enrichment_development_v019=CL:0000790;1.30e-08;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!7.39e-08!102;UBERON:0003061!7.39e-08!102;UBERON:0002193!1.62e-07!112|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.89e-08,98;UBERON:0003061,5.89e-08,98;UBERON:0002193,1.37e-07,108|phase1_expression=8.3572054464456,12.203729861786,8.88012745804618,24.0175916047513,12.0679495495368,8.72338524100369,2.53299878168311,13.2661173419635,21.6784071405866,6.14334841253772,7.6758128476967,13.5433650720707,9.49561121622433,22.4017098857684,33.1397375727916,14.1188280754873,13.2592796165275,7.30310090387373,7.3189919818576,12.3121058076788,15.9120539170517,10.0305510872988,14.884271330815,10.2655818804663,12.6798065990751,6.41872608282791,5.09023654589664,5.27362234801651,20.0615781192941,18.039981710569,20.1260960310899,6.43594857135249,10.843413076017,12.5716363456708,0.387336002901508,6.25544622944655,3.52320527201817,38.2256831886995,34.4936449648644,30.815543641651,39.4091234662267,27.8548552776322,35.5454283335177,20.2103551903595,15.4929136912412,15.0402117936446,13.4808841405297,15.6243797448294,14.5561994320699,26.4677000936378,24.5914278267937,13.2430048737608,23.7874519708267,21.3009945582663,16.251178391321,15.0593871634084,16.1014628534129,9.88783331558372,29.9962214523485,19.5766706516417,25.5734850319616,20.4507806115764,21.7415386807579,19.6063385245039,29.0209238628584,39.7169657283798,21.1759564658495,24.1198718646474,26.5956288394303,18.67824064464,20.5835830895345,23.2014910672166,15.1901945971625,8.66146673878961,10.4176106982871,9.01532175686016,19.2081959260507,16.5194582125657,22.9837588976825,11.9705352371324,12.1339173091445,10.5945209183488,8.79981222306614,14.1996038928154,19.5692035849982,10.2415253415962,14.8146515203325,10.3455439191807,11.8988077101275,17.1729675816366,29.5990743936913,26.4256735216922,30.1995850218931,6.60856642895129,11.2101712596307,7.37475437370216,57.2425431031254,33.405914833679,43.1763147898969,19.8951929514907,21.1849473311834,22.7254946752672,15.5861382726329,16.3773371621205,15.0249012812167,17.5011776721061,19.4978781910811,16.2675976051607,12.6157567133082,21.2124896938742,14.9229009604358,24.3434592017444,35.1439154694083,40.9337466977261,37.6327885697916,21.9820124833278,22.2267886289114,18.8995095015446,24.5429101258918,22.6181444170109,25.3922547004003,23.7613011112094,29.3621482201657,39.163903013252,27.4847598415161,29.3603792534581,19.7070719261051,36.0876070372271,33.4300244729384,34.4682081241062,29.2568239576754,14.75541891348,9.84541726195184,11.9274920286907,20.5548543360715,15.0640379719257,16.7010048880731,28.7114573478555,12.478595865657,7.31707011626461,8.69564378361948,15.9139576729721,12.0217445136539,8.89882662682631,23.0428649494825,18.6318818910216,25.1290545380655,3.57735936458013,8.57992366170192,6.3147775226026,17.2923294409033,13.763753521698,12.1499175562658,13.0020826642522,20.1359729380755,12.380311887303,14.2116577245031,18.3475899010223,18.4998456597089,15.7318687999395,16.1131726843659,4.56163263431108,18.3046543161127,12.5005447317595,14.5825550618717,19.2887413093612,21.7793491447385,20.4952894479646,4.5994991239765,12.3404535743857,13.1905255629893,25.038279312852,42.6558290563158,7.41359888642308,13.9152146474689,12.5364206547934,32.4402492992386,45.8938593198102,18.0880874921162,14.5776176037,13.8773694448616,11.1000396787722,21.4735614425839,15.4917272880141,17.1634998269132,18.7683210279715,13.82822218752,9.37285727335187,15.9201639183463,11.9799082524334,13.3009325691103,17.967478292496,13.597327326923,14.6068838970338,24.0901922080774,13.5117749042945,40.5037062209001,38.0160914330257,24.9739598571342,12.7422590671324,10.0606539854273,11.1101835209684,22.3962150570816,18.0091675064719,23.7047915275652,12.5659996277598,22.5357088359895,4.53728732640084,44.12985037946,13.4541154955697,14.6233011800098,27.608380839765,22.8776614909334,43.5412512677113,15.447699075522,36.2869114318722,17.148912908371,53.5159601397523,16.0166823637601,28.6113520569297,35.5009592516614,14.4075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5645945486,20.7459654593555,35.0533508872397,17.0613512115376,14.3330840846615,16.5546039060733,13.4465820052883,14.7520689228546,9.71143255781842,13.2435020844559,11.598144313382,14.5713297917742,12.1648521000295,10.7433418587139,12.4866095316447,9.0356865631168,9.89464650708862,12.0770274853339,24.4642081202185,14.6434905537651,7.05475944542284,24.0245355318827,12.4908569963862,13.1526672967013,27.0312224297648,15.2156061930024,19.0318368450355,27.2553362141575,33.3247280823394,15.6907614802138,26.9616447294543,9.52816153632368,10.030170836146,12.4157186001908,17.4317127693725,20.2108812243546,10.7284662291366,12.4424427049374,1.74540276136151,19.5739930990698,14.8798007266701,12.9409176016797,11.2482906152185,11.7334775096623,6.77446546174912,13.1766441051894,13.1565590367156,19.5068705843859,18.7465595051084,14.5410372789578,10.3816816558988,7.502995644373,15.7542193497168,16.3424133461794,21.3233981900981,17.6167679283168,35.0717780409513,37.120679148923,10.3161313574164,25.2042746781533,16.573609494574,13.4984383696116,7.87136592496146,29.8369594854623,22.377328082515,12.3084331922025,17.8273158258034,25.6145630106517,23.1686738744328,15.0008087518,16.4248659682418,31.9050169317281,12.6137815277879,25.2987574190495,28.9834262771078,8.65534929218729|short_description=p1@RNF213}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=57674 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14539 | |||
|TSSclassifier=S | |||
|UniProt=Q9HCF4,D6RI12,C9JCP4 | |||
|association_with_transcript=0bp_to_ENST00000319921,ENST00000456466,ENST00000508628,ENST00000558564,NM_020914,NM_020954,uc002jye.1,uc002jyf.2_5end | |||
|description=CAGE_peak_1_at_RNF213_5end | |||
|id=chr17:78234625..78234683,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.45e-08!18;CL:0000789!1.45e-08!18;CL:0002420!1.45e-08!18;CL:0002419!1.45e-08!18;CL:0000790!1.45e-08!18;CL:0000766!7.72e-08!76 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.30e-08;18!CL:0000789;1.30e-08;18!CL:0002419;1.30e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.45e-08,18;CL:0000789,1.45e-08,18;CL:0002420,1.45e-08,18;CL:0002419,1.45e-08,18;CL:0000790,1.45e-08,18;CL:0000766,5.22e-08,72 | |||
|ontology_enrichment_development_v019=CL:0000790;1.30e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.39e-08!102;UBERON:0003061!7.39e-08!102;UBERON:0002193!1.62e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.89e-08,98;UBERON:0003061,5.89e-08,98;UBERON:0002193,1.37e-07,108 | |||
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| |||
|short_description=p1@RNF213 | |||
}} |
Revision as of 16:19, 11 September 2013
Short description: | p1@RNF213 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RNF213_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000319921, ENST00000456466, ENST00000508628, ENST00000558564, NM_020914, NM_020954, uc002jye.1, uc002jyf.2_5end |
EntrezGene: | RNF213 |
HGNC: | 14539 |
UniProt: | Q9HCF4D6RI12C9JCP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.45e-08 | 18 |
alpha-beta T cell | 1.45e-08 | 18 |
immature T cell | 1.45e-08 | 18 |
mature T cell | 1.45e-08 | 18 |
immature alpha-beta T cell | 1.45e-08 | 18 |
myeloid leukocyte | 5.22e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.89e-08 | 98 |
blood island | 5.89e-08 | 98 |
hemolymphoid system | 1.37e-07 | 108 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.