FFCP PHASE1:Hg19::chr19:48673532..48673543,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3978|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6598|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000544761_5end|description=CAGE_peak_3_at_LIG1_5end|id=chr19:48673532..48673543,-|ontology_enrichment_celltype=CL:0000066!1.26e-08!254;CL:0000003!9.22e-08!722;CL:0000213!3.59e-07!57;CL:0000215!3.59e-07!57;CL:0000063!5.04e-07!578;CL:0000012!6.06e-07!682;CL:0000115!6.96e-07!35;CL:0000548!8.73e-07!679;CL:0000004!8.73e-07!679;CL:0000255!8.73e-07!679;CL:0002139!9.63e-07!24|ontology_enrichment_celltype_v019=CL:0002139;2.34e-07;24!CL:0000071;8.22e-07;18!CL:0000115;9.03e-07;36|ontology_enrichment_celltype_v019_2=CL:0000115,1.34e-07,36;CL:0002139,4.23e-07,24;CL:0000071,9.97e-07,18;CL:0002546,9.97e-07,18|ontology_enrichment_development_v019=CL:0002546;8.22e-07;18|ontology_enrichment_disease=DOID:162!3.65e-17!235;DOID:2531!9.71e-17!51;DOID:0060083!9.71e-17!51;DOID:14566!3.33e-16!239;DOID:1240!5.65e-14!39;DOID:8692!6.59e-11!31;DOID:0050686!1.28e-10!137|ontology_enrichment_disease_v019=DOID:1240;3.82e-13;39!DOID:2531;1.60e-12;51!DOID:0060083;1.60e-12;51!DOID:8692;1.14e-11;31!DOID:0060058;8.21e-08;10|ontology_enrichment_disease_v019_2=DOID:2531,3.10e-20,51;DOID:0060083,3.10e-20,51;DOID:162,1.05e-16,235;DOID:1240,2.25e-16,39;DOID:14566,4.04e-16,239;DOID:8692,5.36e-12,31;DOID:0050686,2.06e-09,137;DOID:0060058,4.81e-08,10|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0001737;5.05e-07;9!UBERON:0001557;5.05e-07;9!UBERON:0004638;8.22e-07;18!UBERON:0001986;8.22e-07;18!UBERON:0004852;8.22e-07;18|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.47e-07,9;UBERON:0004638,9.97e-07,18;UBERON:0001986,9.97e-07,18;UBERON:0004852,9.97e-07,18|phase1_expression=0,0,0,1.0007329835313,0.446961094427288,0,0,0,0.261185628199839,0.245733936501509,4.18680700783456,1.52908960491121,0.791300934685361,0.247532705920093,0,0.672325146451775,1.80808358407193,0.730310090387373,0,2.33930010345897,2.44800829493104,0.940364164434263,0.286235987131057,0.958120975510189,0.753255837568817,1.45185470921107,1.47781061009902,1.65292640758726,0.393364276848904,0.767658796194425,0.619264493264304,0.919421224478927,2.409647350226,0.369754010166788,7.04951525280745,2.98555388223585,2.34880351467878,0,0.200544447470142,0.651032612147555,0.223915474239924,0,0.77272670290256,0.145398238779565,0,0,0,0.411167888021826,0,0,0.256160706529101,0,0.689491361473237,0,0,0.188242339542605,0.272906150057846,0.224723484445085,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,1.21079900526674,0,0,0.211255286311942,0.212604299965044,0.209658645508376,0.22465726229299,0,0,0,0,0.730656615058536,0,1.09227722252426,0,0.426730222566507,0.400395987036012,0.574752439954483,0,0.954053754535364,0.569212969109448,0,0.382273228125229,0,1.12101712596307,1.58030450865046,0.983548850569165,1.57204305099666,1.23360899399706,1.67186495390678,0,0,0,1.22551502573691,0.589211814949674,0.664601683750863,0.812411591295047,1.28091319725675,1.1705341280389,0.493313713811028,1.10540007114339,2.02862160014537,0.296573126324121,0.535081656179426,1.04535523804977,2.71942422474159,0.383220493601921,1.37450978193052,1.51811815211702,1.91139248594458,0,0,0.301150238155546,0.639933055772092,1.24930726552346,0,0.821127996921047,1.41124720257313,1.60464117470104,0.579297615531196,0,0,0.383587685530591,1.44575660953827,0.50133791063589,0.434539556882471,3.1811437882044,0.486634870302636,0.378139268656271,1.33037638477538,0.43917392846563,0.458426764241994,0.364295288292542,1.85392221392215,0,0,0.398873881556595,0.953962497221368,0,0.74291500265913,3.37896092523399,0,4.16568601929113,2.82653970962005,1.25849830862972,0.825354125820202,2.29894463190492,0.258416759169329,1.42306505074684,2.34304428935269,2.81980521976403,0.760272105718513,1.22031028774085,1.47065232138347,2.43042584364528,1.3394959242612,1.57170560838319,1.12611480483322,6.13266549863533,0.949265659568129,2.74802615895611,0,0,0.872188104285069,0,0.759783069987479,1.05927344650575,1.14734648299525,0.354668382198357,0.560677600142307,0,0.74000264525148,0,0.134710672069688,0.326923806226917,0.605429710579726,0,0.234321431833797,0,0.570471821544449,0.149448680551801,0.822041490506354,0.485618833104395,0.842704840213491,0.61246251376468,0.368502951935304,0,0,0.247266929278557,4.55080680969013,0,0.673344455816265,1.25118519871964,0.554128230968366,1.31693286264251,0.30648779579902,0,0.794025282120147,1.79389635688862,0.427114777637135,0.423863802319124,1.20036438433761,0.309157587715317,1.28820270022815,0.558350568994769,1.35021065793013,0.389748020644795,1.00973509697646,0.184099797284599,0.323292113637624,0.710019185033229,0.503760491138201,1.01736355386293,0.773043412653187,0.818238361772504,0.573609190778008,0.121973706129595,0.795178609928912,0.580969714347592,1.34759371519982,0,0,0,1.28648187638577,1.38134921352481,0,0.721879481669586,1.77460200059766,1.51726221070292,2.16909926895134,2.09558548191549,1.74303555273925,2.13543557199987,2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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3978 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6598 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000544761_5end | |||
|description=CAGE_peak_3_at_LIG1_5end | |||
|id=chr19:48673532..48673543,- | |||
|ontology_enrichment_celltype=CL:0000066!1.26e-08!254;CL:0000003!9.22e-08!722;CL:0000213!3.59e-07!57;CL:0000215!3.59e-07!57;CL:0000063!5.04e-07!578;CL:0000012!6.06e-07!682;CL:0000115!6.96e-07!35;CL:0000548!8.73e-07!679;CL:0000004!8.73e-07!679;CL:0000255!8.73e-07!679;CL:0002139!9.63e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.34e-07;24!CL:0000071;8.22e-07;18!CL:0000115;9.03e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.34e-07,36;CL:0002139,4.23e-07,24;CL:0000071,9.97e-07,18;CL:0002546,9.97e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;8.22e-07;18 | |||
|ontology_enrichment_disease=DOID:162!3.65e-17!235;DOID:2531!9.71e-17!51;DOID:0060083!9.71e-17!51;DOID:14566!3.33e-16!239;DOID:1240!5.65e-14!39;DOID:8692!6.59e-11!31;DOID:0050686!1.28e-10!137 | |||
|ontology_enrichment_disease_v019=DOID:1240;3.82e-13;39!DOID:2531;1.60e-12;51!DOID:0060083;1.60e-12;51!DOID:8692;1.14e-11;31!DOID:0060058;8.21e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.10e-20,51;DOID:0060083,3.10e-20,51;DOID:162,1.05e-16,235;DOID:1240,2.25e-16,39;DOID:14566,4.04e-16,239;DOID:8692,5.36e-12,31;DOID:0050686,2.06e-09,137;DOID:0060058,4.81e-08,10 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.05e-07;9!UBERON:0001557;5.05e-07;9!UBERON:0004638;8.22e-07;18!UBERON:0001986;8.22e-07;18!UBERON:0004852;8.22e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.47e-07,9;UBERON:0004638,9.97e-07,18;UBERON:0001986,9.97e-07,18;UBERON:0004852,9.97e-07,18 | |||
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| |||
|short_description=p3@LIG1 | |||
}} |
Revision as of 21:34, 11 September 2013
Short description: | p3@LIG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LIG1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000544761_5end |
EntrezGene: | LIG1 |
HGNC: | 6598 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.34e-07 | 36 |
endothelial cell of vascular tree | 4.23e-07 | 24 |
blood vessel endothelial cell | 9.97e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.97e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.47e-07 | 9 |
blood vessel endothelium | 9.97e-07 | 18 |
endothelium | 9.97e-07 | 18 |
cardiovascular system endothelium | 9.97e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.10e-20 | 51 |
immune system cancer | 3.10e-20 | 51 |
cancer | 1.05e-16 | 235 |
leukemia | 2.25e-16 | 39 |
disease of cellular proliferation | 4.04e-16 | 239 |
myeloid leukemia | 5.36e-12 | 31 |
organ system cancer | 2.06e-09 | 137 |
lymphoma | 4.81e-08 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.