FFCP PHASE1:Hg19::chr1:235813325..235813360,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2786|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4407|TSSclassifier=S|UniProt=P50150,B1APZ0|association_with_transcript=-32bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end|coexpression_cluster_id=C1472|description=CAGE_peak_3_at_GNG4_5end|id=chr1:235813325..235813360,-|ontology_enrichment_celltype=CL:0002319!1.11e-11!25;CL:0000047!5.31e-08!8|ontology_enrichment_celltype_v019=CL:0000540;1.64e-11;6!CL:0000404;1.64e-11;6!CL:0002322;7.09e-09;5!CL:0002319;7.68e-09;25!CL:0002321;1.32e-08;15!CL:0000333;8.40e-07;5|ontology_enrichment_celltype_v019_2=CL:0000047,2.64e-14,8;CL:0000540,1.37e-11,6;CL:0000031,1.37e-11,6;CL:0000404,1.37e-11,6;CL:0002322,5.57e-09,5;CL:0002319,7.70e-09,25;CL:0000133,5.34e-07,59|ontology_enrichment_development_v019=CL:0000031;1.64e-11;6|ontology_enrichment_disease=DOID:0050687!2.51e-21!143;DOID:162!1.92e-20!235;DOID:14566!3.57e-19!239;DOID:305!3.37e-12!106;DOID:3095!6.75e-10!22;DOID:2994!6.75e-10!22;DOID:171!1.26e-08!10;DOID:0050686!1.90e-07!137;DOID:3119!5.04e-07!14|ontology_enrichment_disease_v019=DOID:3095;3.66e-09;22!DOID:2994;3.66e-09;22!DOID:171;1.07e-08;10!DOID:169;1.50e-08;6!DOID:3119;1.66e-07;14|ontology_enrichment_disease_v019_2=DOID:0050687,1.25e-16,143;DOID:162,8.43e-14,235;DOID:14566,3.61e-13,239;DOID:305,7.19e-13,106;DOID:3095,4.80e-09,22;DOID:2994,4.80e-09,22;DOID:171,7.90e-09,10;DOID:169,1.30e-08,6;DOID:3119,2.40e-07,14|ontology_enrichment_uberon=UBERON:0000073!1.13e-35!94;UBERON:0001016!1.13e-35!94;UBERON:0005743!9.96e-35!86;UBERON:0001017!2.54e-34!82;UBERON:0000955!7.08e-26!69;UBERON:0006238!7.08e-26!69;UBERON:0001049!5.77e-23!57;UBERON:0005068!5.77e-23!57;UBERON:0006241!5.77e-23!57;UBERON:0007135!5.77e-23!57;UBERON:0000924!2.17e-22!173;UBERON:0006601!2.17e-22!173;UBERON:0002616!3.21e-21!59;UBERON:0002346!4.23e-21!90;UBERON:0004121!1.66e-20!169;UBERON:0003075!5.44e-19!86;UBERON:0007284!5.44e-19!86;UBERON:0002780!4.40e-17!41;UBERON:0001890!4.40e-17!41;UBERON:0006240!4.40e-17!41;UBERON:0003080!2.33e-16!42;UBERON:0000033!2.18e-15!123;UBERON:0000153!4.97e-15!129;UBERON:0007811!4.97e-15!129;UBERON:0002020!7.27e-15!34;UBERON:0003528!7.27e-15!34;UBERON:0001893!7.46e-15!34;UBERON:0002791!3.13e-14!33;UBERON:0001869!3.35e-14!32;UBERON:0003056!5.33e-13!61;UBERON:0000956!1.61e-10!25;UBERON:0000203!1.61e-10!25;UBERON:0002619!2.46e-09!22;UBERON:0000064!3.58e-09!219;UBERON:0001950!2.03e-08!20;UBERON:0007023!2.15e-08!115;UBERON:0003076!7.26e-08!15;UBERON:0003057!7.26e-08!15|ontology_enrichment_uberon_v019=UBERON:0001869;4.64e-09;32!UBERON:0001950;7.47e-09;20!UBERON:0002791;2.55e-08;32!UBERON:0003528;3.33e-08;34!UBERON:0002020;3.33e-08;34!UBERON:0001893;4.96e-08;34!UBERON:0002619;7.55e-08;22!UBERON:0000956;7.57e-08;25!UBERON:0000203;7.57e-08;25!UBERON:0000922;1.89e-07;49!UBERON:0002780;3.31e-07;41!UBERON:0001890;3.31e-07;41!UBERON:0000013;8.40e-07;5!UBERON:0002410;8.40e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.57e-18,89;UBERON:0001017,2.27e-15,81;UBERON:0011216,6.15e-11,223;UBERON:0001869,6.03e-10,32;UBERON:0004121,6.62e-10,171;UBERON:0000924,6.62e-10,171;UBERON:0006601,6.62e-10,171;UBERON:0002780,3.49e-09,41;UBERON:0001890,3.49e-09,41;UBERON:0003080,3.49e-09,41;UBERON:0006240,3.49e-09,41;UBERON:0001893,3.85e-09,34;UBERON:0003528,4.77e-09,34;UBERON:0002020,4.77e-09,34;UBERON:0001049,5.02e-09,56;UBERON:0005068,5.02e-09,56;UBERON:0006241,5.02e-09,56;UBERON:0007135,5.02e-09,56;UBERON:0000073,1.03e-08,53;UBERON:0002616,1.03e-08,53;UBERON:0002791,1.15e-08,32;UBERON:0001950,1.27e-08,20;UBERON:0000955,4.47e-08,68;UBERON:0006238,4.47e-08,68;UBERON:0000956,1.19e-07,25;UBERON:0000203,1.19e-07,25;UBERON:0002619,1.21e-07,22;UBERON:0000013,7.20e-07,5;UBERON:0002410,7.20e-07,5|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,1.74753097704138,0.527533956456907,0,0,0,0,0,0,0.492484232307152,0.204000691244253,0.626909442956176,1.43117993565528,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0.087834785693126,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53723747775827,5.03613119621644,1.85910308591229,1.34759371519982,2.27088765788066,1.45990943630332,0,0,0,0,0,0,0,0,0.220587945464788,0,0.237270619111097,0.404493924480493,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,2.20731549707325,1.35287282397425,0.171567810298526,0,0,0,0.185176890317059,0,0,0,0.231860809950154,0,0,0,0,2.37061319387782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,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665320713092027,4.39577650499262,0,0,8.08426818959282,0,0.488965776731466,0.813792356631477,0,0,0|short_description=p3@GNG4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2786 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4407 | |||
|TSSclassifier=S | |||
|UniProt=P50150,B1APZ0 | |||
|association_with_transcript=-32bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end | |||
|coexpression_cluster_id=C1472 | |||
|description=CAGE_peak_3_at_GNG4_5end | |||
|id=chr1:235813325..235813360,- | |||
|ontology_enrichment_celltype=CL:0002319!1.11e-11!25;CL:0000047!5.31e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.64e-11;6!CL:0000404;1.64e-11;6!CL:0002322;7.09e-09;5!CL:0002319;7.68e-09;25!CL:0002321;1.32e-08;15!CL:0000333;8.40e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.64e-14,8;CL:0000540,1.37e-11,6;CL:0000031,1.37e-11,6;CL:0000404,1.37e-11,6;CL:0002322,5.57e-09,5;CL:0002319,7.70e-09,25;CL:0000133,5.34e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;1.64e-11;6 | |||
|ontology_enrichment_disease=DOID:0050687!2.51e-21!143;DOID:162!1.92e-20!235;DOID:14566!3.57e-19!239;DOID:305!3.37e-12!106;DOID:3095!6.75e-10!22;DOID:2994!6.75e-10!22;DOID:171!1.26e-08!10;DOID:0050686!1.90e-07!137;DOID:3119!5.04e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.66e-09;22!DOID:2994;3.66e-09;22!DOID:171;1.07e-08;10!DOID:169;1.50e-08;6!DOID:3119;1.66e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.25e-16,143;DOID:162,8.43e-14,235;DOID:14566,3.61e-13,239;DOID:305,7.19e-13,106;DOID:3095,4.80e-09,22;DOID:2994,4.80e-09,22;DOID:171,7.90e-09,10;DOID:169,1.30e-08,6;DOID:3119,2.40e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.13e-35!94;UBERON:0001016!1.13e-35!94;UBERON:0005743!9.96e-35!86;UBERON:0001017!2.54e-34!82;UBERON:0000955!7.08e-26!69;UBERON:0006238!7.08e-26!69;UBERON:0001049!5.77e-23!57;UBERON:0005068!5.77e-23!57;UBERON:0006241!5.77e-23!57;UBERON:0007135!5.77e-23!57;UBERON:0000924!2.17e-22!173;UBERON:0006601!2.17e-22!173;UBERON:0002616!3.21e-21!59;UBERON:0002346!4.23e-21!90;UBERON:0004121!1.66e-20!169;UBERON:0003075!5.44e-19!86;UBERON:0007284!5.44e-19!86;UBERON:0002780!4.40e-17!41;UBERON:0001890!4.40e-17!41;UBERON:0006240!4.40e-17!41;UBERON:0003080!2.33e-16!42;UBERON:0000033!2.18e-15!123;UBERON:0000153!4.97e-15!129;UBERON:0007811!4.97e-15!129;UBERON:0002020!7.27e-15!34;UBERON:0003528!7.27e-15!34;UBERON:0001893!7.46e-15!34;UBERON:0002791!3.13e-14!33;UBERON:0001869!3.35e-14!32;UBERON:0003056!5.33e-13!61;UBERON:0000956!1.61e-10!25;UBERON:0000203!1.61e-10!25;UBERON:0002619!2.46e-09!22;UBERON:0000064!3.58e-09!219;UBERON:0001950!2.03e-08!20;UBERON:0007023!2.15e-08!115;UBERON:0003076!7.26e-08!15;UBERON:0003057!7.26e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.64e-09;32!UBERON:0001950;7.47e-09;20!UBERON:0002791;2.55e-08;32!UBERON:0003528;3.33e-08;34!UBERON:0002020;3.33e-08;34!UBERON:0001893;4.96e-08;34!UBERON:0002619;7.55e-08;22!UBERON:0000956;7.57e-08;25!UBERON:0000203;7.57e-08;25!UBERON:0000922;1.89e-07;49!UBERON:0002780;3.31e-07;41!UBERON:0001890;3.31e-07;41!UBERON:0000013;8.40e-07;5!UBERON:0002410;8.40e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.57e-18,89;UBERON:0001017,2.27e-15,81;UBERON:0011216,6.15e-11,223;UBERON:0001869,6.03e-10,32;UBERON:0004121,6.62e-10,171;UBERON:0000924,6.62e-10,171;UBERON:0006601,6.62e-10,171;UBERON:0002780,3.49e-09,41;UBERON:0001890,3.49e-09,41;UBERON:0003080,3.49e-09,41;UBERON:0006240,3.49e-09,41;UBERON:0001893,3.85e-09,34;UBERON:0003528,4.77e-09,34;UBERON:0002020,4.77e-09,34;UBERON:0001049,5.02e-09,56;UBERON:0005068,5.02e-09,56;UBERON:0006241,5.02e-09,56;UBERON:0007135,5.02e-09,56;UBERON:0000073,1.03e-08,53;UBERON:0002616,1.03e-08,53;UBERON:0002791,1.15e-08,32;UBERON:0001950,1.27e-08,20;UBERON:0000955,4.47e-08,68;UBERON:0006238,4.47e-08,68;UBERON:0000956,1.19e-07,25;UBERON:0000203,1.19e-07,25;UBERON:0002619,1.21e-07,22;UBERON:0000013,7.20e-07,5;UBERON:0002410,7.20e-07,5 | |||
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| |||
|short_description=p3@GNG4 | |||
}} |
Revision as of 04:22, 12 September 2013
Short description: | p3@GNG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_GNG4_5end |
Coexpression cluster: | C1472_nonsmall_neuroblastoma_small_tubular_carcinoid_smallcell_merkel |
Association with transcript: | -32bp_to_ENST00000391854, NM_001098722, uc001hxe.3_5end |
EntrezGene: | GNG4 |
HGNC: | 4407 |
UniProt: | P50150B1APZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.64e-14 | 8 |
neuron | 1.37e-11 | 6 |
neuroblast | 1.37e-11 | 6 |
electrically signaling cell | 1.37e-11 | 6 |
embryonic stem cell | 5.57e-09 | 5 |
neural cell | 7.70e-09 | 25 |
neurectodermal cell | 5.34e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.57e-18 | 89 |
central nervous system | 2.27e-15 | 81 |
organ system subdivision | 6.15e-11 | 223 |
cerebral hemisphere | 6.03e-10 | 32 |
ectoderm-derived structure | 6.62e-10 | 171 |
ectoderm | 6.62e-10 | 171 |
presumptive ectoderm | 6.62e-10 | 171 |
regional part of forebrain | 3.49e-09 | 41 |
forebrain | 3.49e-09 | 41 |
anterior neural tube | 3.49e-09 | 41 |
future forebrain | 3.49e-09 | 41 |
telencephalon | 3.85e-09 | 34 |
brain grey matter | 4.77e-09 | 34 |
gray matter | 4.77e-09 | 34 |
neural tube | 5.02e-09 | 56 |
neural rod | 5.02e-09 | 56 |
future spinal cord | 5.02e-09 | 56 |
neural keel | 5.02e-09 | 56 |
regional part of nervous system | 1.03e-08 | 53 |
regional part of brain | 1.03e-08 | 53 |
regional part of telencephalon | 1.15e-08 | 32 |
neocortex | 1.27e-08 | 20 |
brain | 4.47e-08 | 68 |
future brain | 4.47e-08 | 68 |
cerebral cortex | 1.19e-07 | 25 |
pallium | 1.19e-07 | 25 |
regional part of cerebral cortex | 1.21e-07 | 22 |
sympathetic nervous system | 7.20e-07 | 5 |
autonomic nervous system | 7.20e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.25e-16 | 143 |
cancer | 8.43e-14 | 235 |
disease of cellular proliferation | 3.61e-13 | 239 |
carcinoma | 7.19e-13 | 106 |
germ cell and embryonal cancer | 4.80e-09 | 22 |
germ cell cancer | 4.80e-09 | 22 |
neuroectodermal tumor | 7.90e-09 | 10 |
neuroendocrine tumor | 1.30e-08 | 6 |
gastrointestinal system cancer | 2.40e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.