FFCP PHASE1:Hg19::chr2:120974003..120974029,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=90bp_to_ENST00000455707_5end|description=CAGE_peak_1_at_ENST00000455707_5end|id=chr2:120974003..120974029,-|ontology_enrichment_celltype=CL:0000039!2.19e-17!7;CL:0000586!2.19e-17!7;CL:0002322!1.94e-16!5;CL:0000083!1.89e-08!4;CL:1000415!5.11e-08!2;CL:0000066!1.23e-07!254;CL:0002251!5.79e-07!21|ontology_enrichment_celltype_v019=CL:0000039;8.11e-29;7!CL:0000586;8.11e-29;7!CL:0002322;9.36e-18;5!CL:1000415;1.92e-12;2!CL:0002178;9.27e-09;3!CL:0000083;5.07e-07;4!CL:0002553;5.14e-07;1|ontology_enrichment_celltype_v019_2=CL:0000039,8.73e-29,7;CL:0000586,8.73e-29,7;CL:0002322,1.02e-17,5;CL:1000415,1.52e-12,2;CL:0000066,3.87e-09,253;CL:0002178,9.09e-09,3;CL:0000083,5.00e-07,4;CL:0002553,5.45e-07,1|ontology_enrichment_development_v019=UBERON:0009117;2.65e-09;10!UBERON:0005564;2.65e-09;10|ontology_enrichment_disease=DOID:305!4.48e-14!106;DOID:0050687!8.38e-11!143;DOID:1793!1.89e-08!4;DOID:3493!5.67e-08!2;DOID:114!1.66e-07!2;DOID:3095!9.90e-07!22;DOID:2994!9.90e-07!22|ontology_enrichment_disease_v019=DOID:3493;1.92e-12;2!DOID:3095;8.12e-12;22!DOID:2994;8.12e-12;22!DOID:1749;1.76e-10;14!DOID:305;9.70e-09;106!DOID:1799;1.80e-07;1!DOID:10165;1.80e-07;1!DOID:1798;1.80e-07;1!DOID:3151;4.06e-07;1!DOID:3149;4.06e-07;1!DOID:1793;5.07e-07;4!DOID:3119;5.76e-07;14!DOID:178;6.49e-07;1!DOID:326;6.49e-07;1!DOID:3978;6.49e-07;1!DOID:3394;6.49e-07;1!DOID:5844;6.49e-07;1|ontology_enrichment_disease_v019_2=DOID:305,3.16e-24,106;DOID:0050687,2.85e-20,143;DOID:162,8.02e-14,235;DOID:14566,2.04e-13,239;DOID:3493,1.81e-12,2;DOID:3095,8.06e-12,22;DOID:2994,8.06e-12,22;DOID:1749,1.86e-10,14;DOID:1799,1.75e-07,1;DOID:10165,1.75e-07,1;DOID:1798,1.75e-07,1;DOID:3151,4.06e-07,1;DOID:3149,4.06e-07,1;DOID:1793,5.00e-07,4;DOID:3119,5.54e-07,14;DOID:178,6.88e-07,1;DOID:326,6.88e-07,1;DOID:3978,6.88e-07,1;DOID:3394,6.88e-07,1;DOID:5844,6.88e-07,1|ontology_enrichment_uberon=UBERON:0002294!4.37e-12!7;UBERON:0001173!4.37e-12!7;UBERON:0004912!4.37e-12!7;UBERON:0002110!8.65e-11!3;UBERON:0006242!8.65e-11!3;UBERON:0000473!1.85e-10!8;UBERON:0005409!6.82e-09!35;UBERON:0000160!6.95e-08!27;UBERON:0003135!1.66e-07!11;UBERON:0003729!9.66e-07!5|ontology_enrichment_uberon_v019=UBERON:0002294;2.70e-13;7!UBERON:0001173;2.70e-13;7!UBERON:0000473;1.35e-11;8!UBERON:0002110;1.39e-08;3!UBERON:0003135;1.82e-08;11!UBERON:0000997;3.40e-07;1!UBERON:0005056;3.40e-07;1!UBERON:0004176;3.40e-07;1!UBERON:0002323;4.01e-07;45!UBERON:0003343;5.00e-07;4!UBERON:0004785;5.00e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.48e-11,8;UBERON:0002294,2.00e-10,9;UBERON:0001173,2.00e-10,9;UBERON:0004912,2.00e-10,9;UBERON:0002110,1.19e-08,3;UBERON:0006242,1.19e-08,3;UBERON:0003135,1.95e-08,11;UBERON:0000997,3.60e-07,1;UBERON:0005056,3.60e-07,1;UBERON:0003343,5.15e-07,4;UBERON:0004785,5.15e-07,4;UBERON:0002323,6.97e-07,46|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19552671033272,1.32529768321485,1.62671520017326,0.518305275076852,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737930631258681,0,0,0,0.502644862058154,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.61608583148786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79560539918633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42644548097782,7.8769316857268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.5914255691538,0,0,4.84184199214926,6.82158097514268,0,0,0,0,0,0,0,0,0,0,0,0.476809736941136,0,0,0.424059214301822,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,0,11.1528832791291,0,0,1.20990716048664,0,0,0,0,0,0,0,0,10.2459436570725,0,0,7.05545261383519,0,0,0,0,0,0,0,0,0,0,0,0,10.7553260504142,1.92381168603681,0.426905989478705,0,12.247685458099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,2.1964690054889,0.429226048136571,0,0.201550417460179,0,0,0,0,0,0,0,0,0,1.60753148465019,0.825236619583403,0,0,0,0,6.70869375198532,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=90bp_to_ENST00000455707_5end | |||
|description=CAGE_peak_1_at_ENST00000455707_5end | |||
|id=chr2:120974003..120974029,- | |||
|ontology_enrichment_celltype=CL:0000039!2.19e-17!7;CL:0000586!2.19e-17!7;CL:0002322!1.94e-16!5;CL:0000083!1.89e-08!4;CL:1000415!5.11e-08!2;CL:0000066!1.23e-07!254;CL:0002251!5.79e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0000039;8.11e-29;7!CL:0000586;8.11e-29;7!CL:0002322;9.36e-18;5!CL:1000415;1.92e-12;2!CL:0002178;9.27e-09;3!CL:0000083;5.07e-07;4!CL:0002553;5.14e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,8.73e-29,7;CL:0000586,8.73e-29,7;CL:0002322,1.02e-17,5;CL:1000415,1.52e-12,2;CL:0000066,3.87e-09,253;CL:0002178,9.09e-09,3;CL:0000083,5.00e-07,4;CL:0002553,5.45e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.65e-09;10!UBERON:0005564;2.65e-09;10 | |||
|ontology_enrichment_disease=DOID:305!4.48e-14!106;DOID:0050687!8.38e-11!143;DOID:1793!1.89e-08!4;DOID:3493!5.67e-08!2;DOID:114!1.66e-07!2;DOID:3095!9.90e-07!22;DOID:2994!9.90e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.92e-12;2!DOID:3095;8.12e-12;22!DOID:2994;8.12e-12;22!DOID:1749;1.76e-10;14!DOID:305;9.70e-09;106!DOID:1799;1.80e-07;1!DOID:10165;1.80e-07;1!DOID:1798;1.80e-07;1!DOID:3151;4.06e-07;1!DOID:3149;4.06e-07;1!DOID:1793;5.07e-07;4!DOID:3119;5.76e-07;14!DOID:178;6.49e-07;1!DOID:326;6.49e-07;1!DOID:3978;6.49e-07;1!DOID:3394;6.49e-07;1!DOID:5844;6.49e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.16e-24,106;DOID:0050687,2.85e-20,143;DOID:162,8.02e-14,235;DOID:14566,2.04e-13,239;DOID:3493,1.81e-12,2;DOID:3095,8.06e-12,22;DOID:2994,8.06e-12,22;DOID:1749,1.86e-10,14;DOID:1799,1.75e-07,1;DOID:10165,1.75e-07,1;DOID:1798,1.75e-07,1;DOID:3151,4.06e-07,1;DOID:3149,4.06e-07,1;DOID:1793,5.00e-07,4;DOID:3119,5.54e-07,14;DOID:178,6.88e-07,1;DOID:326,6.88e-07,1;DOID:3978,6.88e-07,1;DOID:3394,6.88e-07,1;DOID:5844,6.88e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002294!4.37e-12!7;UBERON:0001173!4.37e-12!7;UBERON:0004912!4.37e-12!7;UBERON:0002110!8.65e-11!3;UBERON:0006242!8.65e-11!3;UBERON:0000473!1.85e-10!8;UBERON:0005409!6.82e-09!35;UBERON:0000160!6.95e-08!27;UBERON:0003135!1.66e-07!11;UBERON:0003729!9.66e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;2.70e-13;7!UBERON:0001173;2.70e-13;7!UBERON:0000473;1.35e-11;8!UBERON:0002110;1.39e-08;3!UBERON:0003135;1.82e-08;11!UBERON:0000997;3.40e-07;1!UBERON:0005056;3.40e-07;1!UBERON:0004176;3.40e-07;1!UBERON:0002323;4.01e-07;45!UBERON:0003343;5.00e-07;4!UBERON:0004785;5.00e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.48e-11,8;UBERON:0002294,2.00e-10,9;UBERON:0001173,2.00e-10,9;UBERON:0004912,2.00e-10,9;UBERON:0002110,1.19e-08,3;UBERON:0006242,1.19e-08,3;UBERON:0003135,1.95e-08,11;UBERON:0000997,3.60e-07,1;UBERON:0005056,3.60e-07,1;UBERON:0003343,5.15e-07,4;UBERON:0004785,5.15e-07,4;UBERON:0002323,6.97e-07,46 | |||
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|short_description=p1@ENST00000455707 | |||
}} |
Revision as of 13:17, 12 September 2013
Short description: | p1@ENST00000455707 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000455707_5end |
Coexpression cluster: | NA |
Association with transcript: | 90bp_to_ENST00000455707_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 8.73e-29 | 7 |
germ cell | 8.73e-29 | 7 |
embryonic stem cell | 1.02e-17 | 5 |
epithelial cell of gall bladder | 1.52e-12 | 2 |
epithelial cell | 3.87e-09 | 253 |
epithelial cell of stomach | 9.09e-09 | 3 |
epithelial cell of pancreas | 5.00e-07 | 4 |
lung fibroblast | 5.45e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 1.48e-11 | 8 |
biliary system | 2.00e-10 | 9 |
biliary tree | 2.00e-10 | 9 |
biliary bud | 2.00e-10 | 9 |
gallbladder | 1.19e-08 | 3 |
gall bladder primordium | 1.19e-08 | 3 |
male reproductive organ | 1.95e-08 | 11 |
mammalian vulva | 3.60e-07 | 1 |
external female genitalia | 3.60e-07 | 1 |
mucosa of oral region | 5.15e-07 | 4 |
respiratory system mucosa | 5.15e-07 | 4 |
body cavity | 6.97e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.16e-24 | 106 |
cell type cancer | 2.85e-20 | 143 |
cancer | 8.02e-14 | 235 |
disease of cellular proliferation | 2.04e-13 | 239 |
signet ring cell adenocarcinoma | 1.81e-12 | 2 |
germ cell and embryonal cancer | 8.06e-12 | 22 |
germ cell cancer | 8.06e-12 | 22 |
squamous cell carcinoma | 1.86e-10 | 14 |
islet cell tumor | 1.75e-07 | 1 |
endocrine pancreas cancer | 1.75e-07 | 1 |
pancreatic endocrine carcinoma | 1.75e-07 | 1 |
skin squamous cell carcinoma | 4.06e-07 | 1 |
keratoacanthoma | 4.06e-07 | 1 |
pancreatic cancer | 5.00e-07 | 4 |
gastrointestinal system cancer | 5.54e-07 | 14 |
vascular disease | 6.88e-07 | 1 |
ischemia | 6.88e-07 | 1 |
extrinsic cardiomyopathy | 6.88e-07 | 1 |
myocardial ischemia | 6.88e-07 | 1 |
myocardial infarction | 6.88e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.