FFCP PHASE1:Mm9::chr10:79516304..79516315,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=625249|HGNC=|MCL_coexpression_id=0|UniProt=O70325,Q8K4U7|association_with_transcript=49bp_to_NM_008162,uc007gbk.1_5end|description=CAGE_peak_2_at_Gpx4_5end|id=chr10:79516304..79516315,+|ontology_enrichment_celltype=CL:0000055!2.19e-07!50|ontology_enrichment_celltype_v019_2=CL:0002319,1.56e-08,43;CL:0000221,4.04e-08,44;CL:0000133,4.04e-08,44;CL:0000333,5.81e-08,10;CL:0000095,5.81e-08,10;CL:0000243,5.81e-08,10;CL:0000123,5.81e-08,10;CL:0000125,5.81e-08,10;CL:0000030,5.81e-08,10;CL:0000339,5.81e-08,10;CL:0002453,1.84e-07,8;CL:0000117,3.04e-07,23;CL:0000337,3.04e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.16e-09!75;UBERON:0001016!1.16e-09!75;UBERON:0001017!3.74e-09!73;UBERON:0005743!3.74e-09!73;UBERON:0001049!1.28e-08!52;UBERON:0005068!1.28e-08!52;UBERON:0006241!1.28e-08!52;UBERON:0007135!1.28e-08!52;UBERON:0002616!7.24e-08!49;UBERON:0002020!7.65e-08!34;UBERON:0000955!1.02e-07!50;UBERON:0006238!1.02e-07!50;UBERON:0002346!3.01e-07!71;UBERON:0003075!3.01e-07!71;UBERON:0007284!3.01e-07!71;UBERON:0004121!4.75e-07!102;UBERON:0000924!4.75e-07!102;UBERON:0006601!4.75e-07!102|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.02e-12,75;UBERON:0000073,3.63e-12,54;UBERON:0001017,1.46e-11,73;UBERON:0001049,7.51e-11,52;UBERON:0005068,7.51e-11,52;UBERON:0006241,7.51e-11,52;UBERON:0007135,7.51e-11,52;UBERON:0010314,1.25e-09,92;UBERON:0002020,2.51e-09,34;UBERON:0002616,4.78e-08,46;UBERON:0000955,1.14e-07,47;UBERON:0006238,1.14e-07,47;UBERON:0002346,4.13e-07,64;UBERON:0003075,4.13e-07,64;UBERON:0007284,4.13e-07,64;UBERON:0003528,4.97e-07,29;UBERON:0002791,4.97e-07,29;UBERON:0001893,4.97e-07,29;UBERON:0000025,5.48e-07,114|phase1_expression=0.960893082628764,0.348975407639361,1.36499771816861,0.90739263392049,0.500895729946347,0.839396359559449,0.233612640595526,0.129123323441576,0,0,0,0.0797721589953364,0.171200729931206,0,1.99865857089398,0.607425802169478,0.699561878128147,0.315462165358238,0.137114433605739,0.42438965179803,222.643333615501,0.397163804803541,0.522399578277871,0.319984845586813,0.68822784320151,1.14846392823004,0.430761996159075,0.215471232685889,0.380046838912748,0.504060259519861,0.221730510655305,1.90509202037889,1.23012957516914,0,0,0.664938581433969,0.612508068787107,0.837063261473815,0,1.57057123192139,2.35292595212406,0,0.485510353031154,1.25896817975577,1.82478476195126,1.28482726513177,7.82391344348039,5.45062890951116,2.85592037554813,3.69416808241138,3.77963338388479,2.87505128729943,0.167782606057736,0.725362142011344,0,1.02903774414379,3.43840127926508,1.54701627683233,1.21389876515759,0.528990979272033,3.1691570175309,6.09920157724438,8.89294796111139,2.2497492932035,0.988866362566974,2.8419204597844,2.09720077362883,8.4528027170742,0.829516898467821,1.35005938331691,0,2.57085885963423,3.09215957332259,0.979926393719632,1.82106394934649,0,6.60695285996332,4.46905683298157,3.5329502648936,1.18697658957174,2.28719109006024,1.04182674111352,5.58365998002762,9.56696437053856,3.97275444219706,1.17851434189467,2.13557521198654,2.05039390407831,1.51452386666368,1.43585964202892,0,0,0.679971333707751,0.539703191637817,0.649776417447669,0.448026887097336,24.0159958425296,2.04516387093669,2.07828803682295,1.06001872353102,0.563373679106722,1.28326477414318,0,0,3.46385665617943,2.02687892380079,0,31.6289346821796,0.258937883647172,0.742210695324124,1.21439728736295,0.304465478312141,1.38369298353635,1.05505848386836,0.940709657085638,1.25666591329675,0.741584903203122,2.31358971071859,1.76922110389975,0.161766849947409,1.10420759230197,0.969750506270444,0,0,1.04723353406728,0.766371165625774,0.11981512450592,2.39961092397363,1.01656181658452,1.64769703345305,2.28750301409313,1.25654352112864,1.91206752211504,3.3243009452943,2.0778804455956,1.78465389374533,0.509196819251581,2.11491850037158,5.81262344397452,0.841767423545896,0.520481771850815,0.919608417733892,0.540186389416048,0.90422890701429,0.544291993210623,0.384341160854549,0.374806898238915,0.517406741478031,0.646703978798527,0,0.351902248327898,0.219195732427575,0.278047249225598,0,0.205782136407943,0.796137067273973,0.702213187313235,0.772043721344145,0.284163499395593,1.03562886267751,1.64168241986767,1.08037236876609,0.946978942340841,1.18058539048442,1.23413690309903,0.930135779001631,1.07309360559848,0.817357396570186,1.48103864922132,1.31333971263276,1.05389452409612,1.90059983652932,2.63460138349261,2.01309628140558,1.47202963994889,0.205809224758569,0.330418782983798,0.528901133327089,0.853153002140936,0.464473343720877,0.515469845288373,1.00841762311671,0.22237804384487,0.570676878337677,0.474529061544512,0.329397909448022,0.251335208800269,0.795825888164603,0.58489226135736,0,0.216138049874694,0.597423819763102,0.948339504765408,0.228497025219458,1.1270773567308,0.203651327845314,0.775809948670503,0.49095073923223,0.379419222745544,1.18088118383682,2.19798218977925,0.493588655687202,0.592905254174298,0.166845105716094,0.786235980452812,0.224862112384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| ||
|EntrezGene=625249 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=O70325,Q8K4U7 | |||
|association_with_transcript=49bp_to_NM_008162,uc007gbk.1_5end | |||
|description=CAGE_peak_2_at_Gpx4_5end | |||
|id=chr10:79516304..79516315,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.19e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.56e-08,43;CL:0000221,4.04e-08,44;CL:0000133,4.04e-08,44;CL:0000333,5.81e-08,10;CL:0000095,5.81e-08,10;CL:0000243,5.81e-08,10;CL:0000123,5.81e-08,10;CL:0000125,5.81e-08,10;CL:0000030,5.81e-08,10;CL:0000339,5.81e-08,10;CL:0002453,1.84e-07,8;CL:0000117,3.04e-07,23;CL:0000337,3.04e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.16e-09!75;UBERON:0001016!1.16e-09!75;UBERON:0001017!3.74e-09!73;UBERON:0005743!3.74e-09!73;UBERON:0001049!1.28e-08!52;UBERON:0005068!1.28e-08!52;UBERON:0006241!1.28e-08!52;UBERON:0007135!1.28e-08!52;UBERON:0002616!7.24e-08!49;UBERON:0002020!7.65e-08!34;UBERON:0000955!1.02e-07!50;UBERON:0006238!1.02e-07!50;UBERON:0002346!3.01e-07!71;UBERON:0003075!3.01e-07!71;UBERON:0007284!3.01e-07!71;UBERON:0004121!4.75e-07!102;UBERON:0000924!4.75e-07!102;UBERON:0006601!4.75e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.02e-12,75;UBERON:0000073,3.63e-12,54;UBERON:0001017,1.46e-11,73;UBERON:0001049,7.51e-11,52;UBERON:0005068,7.51e-11,52;UBERON:0006241,7.51e-11,52;UBERON:0007135,7.51e-11,52;UBERON:0010314,1.25e-09,92;UBERON:0002020,2.51e-09,34;UBERON:0002616,4.78e-08,46;UBERON:0000955,1.14e-07,47;UBERON:0006238,1.14e-07,47;UBERON:0002346,4.13e-07,64;UBERON:0003075,4.13e-07,64;UBERON:0007284,4.13e-07,64;UBERON:0003528,4.97e-07,29;UBERON:0002791,4.97e-07,29;UBERON:0001893,4.97e-07,29;UBERON:0000025,5.48e-07,114 | |||
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| |||
|short_description=p2@Gpx4 | |||
}} |
Revision as of 17:33, 12 September 2013
Short description: | p2@Gpx4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gpx4_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 49bp_to_NM_008162, uc007gbk.1_5end |
EntrezGene: | Gpx4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.56e-08 | 43 |
ectodermal cell | 4.04e-08 | 44 |
neurectodermal cell | 4.04e-08 | 44 |
migratory neural crest cell | 5.81e-08 | 10 |
neuron associated cell | 5.81e-08 | 10 |
glial cell (sensu Vertebrata) | 5.81e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 5.81e-08 | 10 |
glial cell | 5.81e-08 | 10 |
glioblast | 5.81e-08 | 10 |
glioblast (sensu Vertebrata) | 5.81e-08 | 10 |
oligodendrocyte precursor cell | 1.84e-07 | 8 |
CNS neuron (sensu Vertebrata) | 3.04e-07 | 23 |
neuroblast (sensu Vertebrata) | 3.04e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.02e-12 | 75 |
regional part of nervous system | 3.63e-12 | 54 |
central nervous system | 1.46e-11 | 73 |
neural tube | 7.51e-11 | 52 |
neural rod | 7.51e-11 | 52 |
future spinal cord | 7.51e-11 | 52 |
neural keel | 7.51e-11 | 52 |
structure with developmental contribution from neural crest | 1.25e-09 | 92 |
gray matter | 2.51e-09 | 34 |
regional part of brain | 4.78e-08 | 46 |
brain | 1.14e-07 | 47 |
future brain | 1.14e-07 | 47 |
neurectoderm | 4.13e-07 | 64 |
neural plate | 4.13e-07 | 64 |
presumptive neural plate | 4.13e-07 | 64 |
brain grey matter | 4.97e-07 | 29 |
regional part of telencephalon | 4.97e-07 | 29 |
telencephalon | 4.97e-07 | 29 |
tube | 5.48e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.