FFCP PHASE1:Mm9::chr12:86827221..86827240,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:86827221..86827240,+|id=chr12:86827221..86827240,+|ontology_enrichment_celltype=CL:0000144!2.02e-16!121;CL:0000012!2.02e-16!121;CL:0002371!1.17e-14!118;CL:0000548!8.01e-13!115;CL:0000004!8.01e-13!115;CL:0000255!8.01e-13!115;CL:0000034!9.97e-11!97;CL:0000063!2.42e-10!66;CL:0000723!5.37e-09!91;CL:0000048!5.37e-09!91;CL:0002563!5.27e-08!9;CL:0002251!5.27e-08!9;CL:0000066!4.23e-07!25;CL:0002321!5.42e-07!70;CL:0000220!5.42e-07!70|ontology_enrichment_celltype_v019_2=CL:0000066,5.40e-20,25;CL:0002563,3.57e-17,9;CL:0002251,3.57e-17,9;CL:0000075,2.40e-12,7;CL:0000223,4.10e-11,20;CL:0000239,4.53e-10,6;CL:0000677,4.53e-10,6;CL:0000584,4.53e-10,6;CL:0002076,9.59e-10,15;CL:0000034,3.10e-09,97;CL:0002250,5.76e-09,3;CL:0000723,4.07e-08,91;CL:0000048,4.07e-08,91;CL:0000682,4.10e-08,3;CL:0000084,4.64e-07,11;CL:0000827,4.64e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,1.17e-08,3;DOID:4045,1.17e-08,3|ontology_enrichment_uberon=UBERON:0000485!1.34e-09!11;UBERON:0003350!5.27e-08!9;UBERON:0004808!5.27e-08!9;UBERON:0001277!5.27e-08!9;UBERON:0000344!3.30e-07!15|ontology_enrichment_uberon_v019_2=UBERON:0000485,9.24e-22,11;UBERON:0003350,3.57e-17,9;UBERON:0004808,3.57e-17,9;UBERON:0001277,3.57e-17,9;UBERON:0001242,1.86e-11,13;UBERON:0001262,1.86e-11,13;UBERON:0004786,1.86e-11,13;UBERON:0000344,9.59e-10,15;UBERON:0000490,1.09e-09,66;UBERON:0007524,6.64e-08,11;UBERON:0003077,6.64e-08,11;UBERON:0007285,6.64e-08,11|phase1_expression=2.08193501236232,0.348975407639361,1.36499771816861,4.23449895829562,3.00537437967808,1.17515490338323,1.16806320297763,1.42035655785734,1.40788722151667,1.40438715793196,0,0,1.71200729931206,0.611942816932982,0.666219523631325,0,0,0.315462165358238,0.548457734422955,0.84877930359606,0.17008658030214,0.496454756004426,1.04479915655574,0.319984845586813,0.45881856213434,2.29692785646008,1.29228598847722,2.15471232685889,0,0,0.221730510655305,0,0,0,7.22129049378186,2.82598897109437,7.35009682544529,5.4409111995798,5.4693474116666,1.57057123192139,36.4703522579229,12.9778642142105,4.85510353031154,0.125896817975577,0.202753862439029,0.183546752161682,0.782391344348039,0.218025156380447,0,0.194429899074283,0.279972843250725,0,0,0,1.00828139742739,0,1.14613375975503,0.515672092277442,0.202316460859598,0,0,1.0165335962074,0,0,0.988866362566974,0,0.299600110518405,0.384218305321555,0,0,0,0,0,0,0,0,1.10115880999389,0.127687338085188,0.153606533256243,0,0,0,0,0,0.15279824777681,0,0.142371680799103,0.186399445825301,0.151452386666368,1.13357340160178,11.3047150593654,0,2.03991400112325,0,0,0,0,0,0.259786004602869,0,3.38024207464033,0,0,0,0,0.506719730950197,0,0.11418387971906,0,0,0,0,0,0,0,0.125666591329675,0.247194967734374,0.144599356919912,0,0,0,0,0,0.585561594023094,0,0,0.958520996047362,1.19980546198682,0.254140454146129,0,0,0,0,0,0,0,0.203678727700633,0.124406970610093,0,0,0,0,0,0,0,0.12811372028485,0.0937017245597288,0,0.862271971731369,0.189106080167819,0.351902248327898,0,0.278047249225598,0.348252166522167,0.61734640922383,0,0,0.51469581422943,0.284163499395593,0.414251545071004,0.234526059981096,0.540186184383045,0.23674473558521,0,0,0.232533944750408,0,0,0.16455984991348,0,0,0,0,0.268412837520744,0,0,0.330418782983798,0.264450566663544,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0.432276099749388,0,0.758671603812327,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0.585400943573396,0.157635144106191,0,0.159454768657487,0.491589944147214,0.172684981865896,0,1.50791283939272,0.54390568381871,0,0,0.160550589987792,0.35163505977661,0,0,0.315508219416257,0.390438744296638,1.07711698866399,0.477937595905104,0.891194696329576,1.69845918473299,0.809621403349789,0.292255857911312,0.790575555893047,0.321321316421807,0,0.178065603667255,0.162886959353576,0,0,0,0,0.565815239267694,0,0,0,0,0,0,0,0,0,0.18006109403131,0.258717367565509,0,0.177340233642274,0,0,0,0.469343416127421,0.21183207086382,0,0.16488625294148,0.322928853391811,0,0,0,0.291480836629851,0,0,0,0,0,0,0,1.18984900995699,2.37917468950219,0.967399816630967,0,0,0,0,0,0,0,0,0,0.129614973291793,0.621339313086926,0,0,0,0,0.129159823477731,0.168956125490778,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.335769232728157,0.19318959403219,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.209613162627982,0,0,0,0.320919209591815,0,0,0.188626341386076,0.0936415074698824,0,0.229741875822453,0,0,0,0,0.147198920134397,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.429742108096597,0.191288332068843,0,0|short_description=p@chr12:86827221..86827240,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:86827221..86827240,+ | |||
|id=chr12:86827221..86827240,+ | |||
|ontology_enrichment_celltype=CL:0000144!2.02e-16!121;CL:0000012!2.02e-16!121;CL:0002371!1.17e-14!118;CL:0000548!8.01e-13!115;CL:0000004!8.01e-13!115;CL:0000255!8.01e-13!115;CL:0000034!9.97e-11!97;CL:0000063!2.42e-10!66;CL:0000723!5.37e-09!91;CL:0000048!5.37e-09!91;CL:0002563!5.27e-08!9;CL:0002251!5.27e-08!9;CL:0000066!4.23e-07!25;CL:0002321!5.42e-07!70;CL:0000220!5.42e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.40e-20,25;CL:0002563,3.57e-17,9;CL:0002251,3.57e-17,9;CL:0000075,2.40e-12,7;CL:0000223,4.10e-11,20;CL:0000239,4.53e-10,6;CL:0000677,4.53e-10,6;CL:0000584,4.53e-10,6;CL:0002076,9.59e-10,15;CL:0000034,3.10e-09,97;CL:0002250,5.76e-09,3;CL:0000723,4.07e-08,91;CL:0000048,4.07e-08,91;CL:0000682,4.10e-08,3;CL:0000084,4.64e-07,11;CL:0000827,4.64e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,1.17e-08,3;DOID:4045,1.17e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0000485!1.34e-09!11;UBERON:0003350!5.27e-08!9;UBERON:0004808!5.27e-08!9;UBERON:0001277!5.27e-08!9;UBERON:0000344!3.30e-07!15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000485,9.24e-22,11;UBERON:0003350,3.57e-17,9;UBERON:0004808,3.57e-17,9;UBERON:0001277,3.57e-17,9;UBERON:0001242,1.86e-11,13;UBERON:0001262,1.86e-11,13;UBERON:0004786,1.86e-11,13;UBERON:0000344,9.59e-10,15;UBERON:0000490,1.09e-09,66;UBERON:0007524,6.64e-08,11;UBERON:0003077,6.64e-08,11;UBERON:0007285,6.64e-08,11 | |||
|phase1_expression=2.08193501236232,0.348975407639361,1.36499771816861,4.23449895829562,3.00537437967808,1.17515490338323,1.16806320297763,1.42035655785734,1.40788722151667,1.40438715793196,0,0,1.71200729931206,0.611942816932982,0.666219523631325,0,0,0.315462165358238,0.548457734422955,0.84877930359606,0.17008658030214,0.496454756004426,1.04479915655574,0.319984845586813,0.45881856213434,2.29692785646008,1.29228598847722,2.15471232685889,0,0,0.221730510655305,0,0,0,7.22129049378186,2.82598897109437,7.35009682544529,5.4409111995798,5.4693474116666,1.57057123192139,36.4703522579229,12.9778642142105,4.85510353031154,0.125896817975577,0.202753862439029,0.183546752161682,0.782391344348039,0.218025156380447,0,0.194429899074283,0.279972843250725,0,0,0,1.00828139742739,0,1.14613375975503,0.515672092277442,0.202316460859598,0,0,1.0165335962074,0,0,0.988866362566974,0,0.299600110518405,0.384218305321555,0,0,0,0,0,0,0,0,1.10115880999389,0.127687338085188,0.153606533256243,0,0,0,0,0,0.15279824777681,0,0.142371680799103,0.186399445825301,0.151452386666368,1.13357340160178,11.3047150593654,0,2.03991400112325,0,0,0,0,0,0.259786004602869,0,3.38024207464033,0,0,0,0,0.506719730950197,0,0.11418387971906,0,0,0,0,0,0,0,0.125666591329675,0.247194967734374,0.144599356919912,0,0,0,0,0,0.585561594023094,0,0,0.958520996047362,1.19980546198682,0.254140454146129,0,0,0,0,0,0,0,0.203678727700633,0.124406970610093,0,0,0,0,0,0,0,0.12811372028485,0.0937017245597288,0,0.862271971731369,0.189106080167819,0.351902248327898,0,0.278047249225598,0.348252166522167,0.61734640922383,0,0,0.51469581422943,0.284163499395593,0.414251545071004,0.234526059981096,0.540186184383045,0.23674473558521,0,0,0.232533944750408,0,0,0.16455984991348,0,0,0,0,0.268412837520744,0,0,0.330418782983798,0.264450566663544,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0.432276099749388,0,0.758671603812327,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0.585400943573396,0.157635144106191,0,0.159454768657487,0.491589944147214,0.172684981865896,0,1.50791283939272,0.54390568381871,0,0,0.160550589987792,0.35163505977661,0,0,0.315508219416257,0.390438744296638,1.07711698866399,0.477937595905104,0.891194696329576,1.69845918473299,0.809621403349789,0.292255857911312,0.790575555893047,0.321321316421807,0,0.178065603667255,0.162886959353576,0,0,0,0,0.565815239267694,0,0,0,0,0,0,0,0,0,0.18006109403131,0.258717367565509,0,0.177340233642274,0,0,0,0.469343416127421,0.21183207086382,0,0.16488625294148,0.322928853391811,0,0,0,0.291480836629851,0,0,0,0,0,0,0,1.18984900995699,2.37917468950219,0.967399816630967,0,0,0,0,0,0,0,0,0,0.129614973291793,0.621339313086926,0,0,0,0,0.129159823477731,0.168956125490778,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.335769232728157,0.19318959403219,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.209613162627982,0,0,0,0.320919209591815,0,0,0.188626341386076,0.0936415074698824,0,0.229741875822453,0,0,0,0,0.147198920134397,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.429742108096597,0.191288332068843,0,0 | |||
|short_description=p@chr12:86827221..86827240,+ | |||
}} |
Revision as of 23:31, 12 September 2013
Short description: | p@chr12:86827221..86827240, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:86827221..86827240, + |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.40e-20 | 25 |
intestinal epithelial cell | 3.57e-17 | 9 |
epithelial cell of alimentary canal | 3.57e-17 | 9 |
columnar/cuboidal epithelial cell | 2.40e-12 | 7 |
endodermal cell | 4.10e-11 | 20 |
brush border epithelial cell | 4.53e-10 | 6 |
gut absorptive cell | 4.53e-10 | 6 |
enterocyte | 4.53e-10 | 6 |
endo-epithelial cell | 9.59e-10 | 15 |
stem cell | 3.10e-09 | 97 |
intestinal crypt stem cell | 5.76e-09 | 3 |
somatic stem cell | 4.07e-08 | 91 |
multi fate stem cell | 4.07e-08 | 91 |
M cell of gut | 4.10e-08 | 3 |
T cell | 4.64e-07 | 11 |
pro-T cell | 4.64e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
simple columnar epithelium | 9.24e-22 | 11 |
epithelium of mucosa | 3.57e-17 | 9 |
gastrointestinal system epithelium | 3.57e-17 | 9 |
intestinal epithelium | 3.57e-17 | 9 |
intestinal mucosa | 1.86e-11 | 13 |
wall of intestine | 1.86e-11 | 13 |
gastrointestinal system mucosa | 1.86e-11 | 13 |
mucosa | 9.59e-10 | 15 |
unilaminar epithelium | 1.09e-09 | 66 |
dense mesenchyme tissue | 6.64e-08 | 11 |
paraxial mesoderm | 6.64e-08 | 11 |
presumptive paraxial mesoderm | 6.64e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 1.17e-08 | 3 |
muscle cancer | 1.17e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.