FFCP PHASE1:Mm9::chr13:109906442..109906471,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=238871|HGNC=|MCL_coexpression_id=30|UniProt=|association_with_transcript=12bp_to_ENSMUST00000129374_5end|description=CAGE_peak_35_at_Pde4d_5end|id=chr13:109906442..109906471,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.30e-13!73;UBERON:0005743!1.30e-13!73;UBERON:0003076!4.69e-13!12;UBERON:0003057!4.69e-13!12;UBERON:0000073!5.01e-13!75;UBERON:0001016!5.01e-13!75;UBERON:0001049!5.69e-12!52;UBERON:0005068!5.69e-12!52;UBERON:0006241!5.69e-12!52;UBERON:0007135!5.69e-12!52;UBERON:0002346!1.07e-10!71;UBERON:0003075!1.07e-10!71;UBERON:0007284!1.07e-10!71;UBERON:0004121!8.78e-10!102;UBERON:0000924!8.78e-10!102;UBERON:0006601!8.78e-10!102;UBERON:0000033!1.09e-09!63;UBERON:0002616!1.56e-09!49;UBERON:0000955!3.11e-09!50;UBERON:0006238!3.11e-09!50;UBERON:0004733!8.21e-08!6;UBERON:0004732!8.21e-08!6;UBERON:0002028!8.21e-08!6;UBERON:0007277!8.21e-08!6;UBERON:0002298!9.62e-08!6;UBERON:0002020!1.02e-07!34;UBERON:0002240!8.83e-07!6;UBERON:0005174!8.83e-07!6;UBERON:0001137!8.83e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0004733,1.19e-19,6;UBERON:0004732,1.19e-19,6;UBERON:0002028,1.19e-19,6;UBERON:0007277,1.19e-19,6;UBERON:0002037,8.72e-14,4;UBERON:0002680,8.72e-14,4;UBERON:0001895,8.72e-14,4;UBERON:0010092,8.72e-14,4;UBERON:0006215,8.72e-14,4;UBERON:0003076,3.36e-10,12;UBERON:0003057,3.36e-10,12;UBERON:0002616,4.97e-10,46;UBERON:0000955,8.06e-10,47;UBERON:0006238,8.06e-10,47;UBERON:0001049,6.85e-09,52;UBERON:0005068,6.85e-09,52;UBERON:0006241,6.85e-09,52;UBERON:0007135,6.85e-09,52;UBERON:0000073,1.45e-08,54;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0001896,1.76e-07,2;UBERON:0002298,1.76e-07,2;UBERON:0005290,1.76e-07,2;UBERON:0010096,1.76e-07,2;UBERON:0002346,3.03e-07,64;UBERON:0003075,3.03e-07,64;UBERON:0007284,3.03e-07,64|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,0,1.26766280701236,0.338844532069132,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0.638436690425939,0.921639199537461,0,0.0914876436024097,0,1.3959149950069,0,0.61119299110724,0.294628585473668,0.284743361598206,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.7152445579353,26.5997317653088,0,0,0,0,0.299581278809645,0,0,0.347648640384553,0.511430914660661,0.83115217823824,0,0,0,0,0,0.130120442962704,0,0,0,0,0.2562274405697,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,1.28440471990234,0.703270119553219,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0,2.29158205375759,0.171853182343688,0,0.755393897389701,0,0,0,0.51776031175182,0,0,0.170733605754134,0,0.209613162627982,0,0.222246727801615,0,0,0,0,0.188626341386076,0.187283014939765,0.192075457214608,0.17230640686684,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0,0.0941093804153306,0.169229215783353,0.182927972872773,0,0,0,0.118635018124174,0,0,0,0.192906610981141,0.249810577937946,0,0.214871054048298,0,0,0|short_description=p35@Pde4d}} | ||
|EntrezGene=238871 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|UniProt= | |||
|association_with_transcript=12bp_to_ENSMUST00000129374_5end | |||
|description=CAGE_peak_35_at_Pde4d_5end | |||
|id=chr13:109906442..109906471,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.30e-13!73;UBERON:0005743!1.30e-13!73;UBERON:0003076!4.69e-13!12;UBERON:0003057!4.69e-13!12;UBERON:0000073!5.01e-13!75;UBERON:0001016!5.01e-13!75;UBERON:0001049!5.69e-12!52;UBERON:0005068!5.69e-12!52;UBERON:0006241!5.69e-12!52;UBERON:0007135!5.69e-12!52;UBERON:0002346!1.07e-10!71;UBERON:0003075!1.07e-10!71;UBERON:0007284!1.07e-10!71;UBERON:0004121!8.78e-10!102;UBERON:0000924!8.78e-10!102;UBERON:0006601!8.78e-10!102;UBERON:0000033!1.09e-09!63;UBERON:0002616!1.56e-09!49;UBERON:0000955!3.11e-09!50;UBERON:0006238!3.11e-09!50;UBERON:0004733!8.21e-08!6;UBERON:0004732!8.21e-08!6;UBERON:0002028!8.21e-08!6;UBERON:0007277!8.21e-08!6;UBERON:0002298!9.62e-08!6;UBERON:0002020!1.02e-07!34;UBERON:0002240!8.83e-07!6;UBERON:0005174!8.83e-07!6;UBERON:0001137!8.83e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004733,1.19e-19,6;UBERON:0004732,1.19e-19,6;UBERON:0002028,1.19e-19,6;UBERON:0007277,1.19e-19,6;UBERON:0002037,8.72e-14,4;UBERON:0002680,8.72e-14,4;UBERON:0001895,8.72e-14,4;UBERON:0010092,8.72e-14,4;UBERON:0006215,8.72e-14,4;UBERON:0003076,3.36e-10,12;UBERON:0003057,3.36e-10,12;UBERON:0002616,4.97e-10,46;UBERON:0000955,8.06e-10,47;UBERON:0006238,8.06e-10,47;UBERON:0001049,6.85e-09,52;UBERON:0005068,6.85e-09,52;UBERON:0006241,6.85e-09,52;UBERON:0007135,6.85e-09,52;UBERON:0000073,1.45e-08,54;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0001896,1.76e-07,2;UBERON:0002298,1.76e-07,2;UBERON:0005290,1.76e-07,2;UBERON:0010096,1.76e-07,2;UBERON:0002346,3.03e-07,64;UBERON:0003075,3.03e-07,64;UBERON:0007284,3.03e-07,64 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,0,1.26766280701236,0.338844532069132,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0.638436690425939,0.921639199537461,0,0.0914876436024097,0,1.3959149950069,0,0.61119299110724,0.294628585473668,0.284743361598206,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.7152445579353,26.5997317653088,0,0,0,0,0.299581278809645,0,0,0.347648640384553,0.511430914660661,0.83115217823824,0,0,0,0,0,0.130120442962704,0,0,0,0,0.2562274405697,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,1.28440471990234,0.703270119553219,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0,2.29158205375759,0.171853182343688,0,0.755393897389701,0,0,0,0.51776031175182,0,0,0.170733605754134,0,0.209613162627982,0,0.222246727801615,0,0,0,0,0.188626341386076,0.187283014939765,0.192075457214608,0.17230640686684,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0,0.0941093804153306,0.169229215783353,0.182927972872773,0,0,0,0.118635018124174,0,0,0,0.192906610981141,0.249810577937946,0,0.214871054048298,0,0,0 | |||
|short_description=p35@Pde4d | |||
}} |
Revision as of 23:50, 12 September 2013
Short description: | p35@Pde4d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_35_at_Pde4d_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | 12bp_to_ENSMUST00000129374_5end |
EntrezGene: | Pde4d |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
segmental subdivision of hindbrain | 1.19e-19 | 6 |
segmental subdivision of nervous system | 1.19e-19 | 6 |
hindbrain | 1.19e-19 | 6 |
presumptive hindbrain | 1.19e-19 | 6 |
cerebellum | 8.72e-14 | 4 |
regional part of metencephalon | 8.72e-14 | 4 |
metencephalon | 8.72e-14 | 4 |
future metencephalon | 8.72e-14 | 4 |
rhombic lip | 8.72e-14 | 4 |
posterior neural tube | 3.36e-10 | 12 |
chordal neural plate | 3.36e-10 | 12 |
regional part of brain | 4.97e-10 | 46 |
brain | 8.06e-10 | 47 |
future brain | 8.06e-10 | 47 |
neural tube | 6.85e-09 | 52 |
neural rod | 6.85e-09 | 52 |
future spinal cord | 6.85e-09 | 52 |
neural keel | 6.85e-09 | 52 |
regional part of nervous system | 1.45e-08 | 54 |
central nervous system | 1.47e-08 | 73 |
nervous system | 2.47e-08 | 75 |
medulla oblongata | 1.76e-07 | 2 |
brainstem | 1.76e-07 | 2 |
myelencephalon | 1.76e-07 | 2 |
future myelencephalon | 1.76e-07 | 2 |
neurectoderm | 3.03e-07 | 64 |
neural plate | 3.03e-07 | 64 |
presumptive neural plate | 3.03e-07 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.