FFCP PHASE1:Hg19::chr4:160025300..160025318,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9693|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16854|TSSclassifier=S|UniProt=|association_with_transcript=-11bp_to_ENST00000505478_5end|coexpression_cluster_id=C446|description=CAGE_peak_9_at_RAPGEF2_5end|id=chr4:160025300..160025318,+|ontology_enrichment_celltype=CL:0000766!4.30e-08!76;CL:0002057!4.27e-07!42|ontology_enrichment_celltype_v019=CL:0000097;7.29e-33;5!CL:0000094;2.06e-20;8!CL:0000775;2.06e-20;3!CL:0000163;3.40e-18;9!CL:0000081;8.56e-15;11!CL:0000771;3.98e-14;2!CL:0000764;5.51e-14;2!CL:0000558;5.51e-14;2!CL:0000228;1.91e-07;1!CL:0002372;1.91e-07;1|ontology_enrichment_celltype_v019_2=CL:0000097,7.32e-33,5;CL:0002028,7.32e-33,5;CL:0000775,1.76e-20,3;CL:0000094,1.80e-20,8;CL:0000163,3.41e-18,9;CL:0000081,7.76e-15,11;CL:0000771,3.74e-14,2;CL:0000764,5.17e-14,2;CL:0000765,5.17e-14,2;CL:0000050,5.17e-14,2;CL:0000038,5.17e-14,2;CL:0000558,5.17e-14,2;CL:0000547,5.17e-14,2;CL:0000549,5.17e-14,2;CL:0000550,5.17e-14,2;CL:0000552,5.17e-14,2;CL:0000766,8.23e-09,72;CL:0000228,1.39e-07,1;CL:0002372,1.39e-07,1;CL:0000763,1.46e-07,108;CL:0000049,1.46e-07,108|ontology_enrichment_development_v019=UBERON:0000358;9.12e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.95e-09!115|ontology_enrichment_uberon_v019=UBERON:0002771;1.58e-13;2!UBERON:0000200;6.78e-10;6!UBERON:0001950;3.58e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0002771,2.24e-13,2;UBERON:0000200,1.03e-09,6;UBERON:0001950,4.25e-07,20|phase1_expression=0,0.428201047781966,0,0,0,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0.123121058076788,0,0,0,0,0,0.152826811495903,0.0821005894499457,0,0,0.767658796194425,0.309632246632152,0,0,0.369754010166788,0.232401601740905,0,0,0,0.802177789880567,0.651032612147555,0,0.32389366601898,0,0.581592955118259,0,0,0.232429036905685,0.411167888021826,0.309706370895104,0.28769239232215,0.256160706529101,0.47296445977717,0.689491361473237,0,0,0.564727018627814,0.545812300115692,0.449446968890169,0.612167784741805,0.641858054152187,0,0.659702600373432,0.398927315243264,0.852449501065388,2.32167390902867,0,0,0.251248665256743,0.521482918420201,0.65156653411535,0.605399502633369,0,0.632924774881769,0,0,0,0.22465726229299,0.300353785683013,0.32145117339416,0,0.39783335439818,0.730656615058536,0,0.546138611262131,0,0,0,0,0,0,1.1384259382189,0,0.382273228125229,0,0,0,0,0,0.411202997999018,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,1.03088233644789,0.506039384039006,0,0.651083453856419,0,0.150575119077773,0,0,0.473554504088034,0,0.403213486449465,0.802320587350522,0.289648807765598,0,0.670700859703636,0,0,0,0.434539556882471,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0.715471872916026,0,0.74291500265913,0,0,0,0,0.419499436209906,1.37559020970034,0,0,0,0,0,0,0,0,0,0,0,0.337834441449967,0,0,0.183201743930407,3.9534125230819,3.87780264148325,0,0,0.12663051166458,0.397227542439656,0.573673241497627,0,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0.323745888736263,0.140450806702248,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0.168336113954066,0.250237039743928,0,0,0,0.300476117813194,0,0,0,0,0.300091096084402,0.206105058476878,0.515281080091258,0.18611685633159,0.168776332241266,0.0974370051611986,0.504867548488229,0.0920498986422993,0.161646056818812,0.355009592516614,0.10075209822764,0.169560592310488,0,0,0,0,0.397589304964456,0.116193942869518,0.414644220061482,0,0,0,0,0,0.464367928031979,0,0.236613600079688,0,0.241011029883482,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0.441463099414651,0.122988438543114,0.171567810298526,0.109750285408626,0,0,0.277765335475589,0,0,1.44331342025273,0,0,0,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0.383382679165211,2.95597942737566,4.13827639862162,6.01251535068239,4.61183850934277,3.66103056936502,0,0,0,0,0.102827492703324,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,1.42636905040718,0,0.410952645100767,0.358121926479791,0,0,0,0.128343036279748,0.254094624222463,0,0.773288812777695,0.502548796003046,0.637938751653163,2.99602809578873,5.9832291840805,4.55857064779639,0,0.500170521059677,0,0.415941723061614,0.356857977594324,0.157702415033935,0,0,0,0,0,0,0.0868836144680828,0,0,0,0.647142602455851,0,0,0,0,0.496215615637554,0.153461973288062,0.841980283299221,0.128139149255701,0,0,0,0,0,0.0821271560138091,0.519254429183621,0.232420756919918,0.241718899183244,0.40101294060657,0.552485933615378,0,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0,0,3.94667777962682,2.61435451024901,0,0,0,0.515205058238611,0.183138929636687,0.082509499920588,0.574265537996172,0,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0.214840489736547,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9693 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16854 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-11bp_to_ENST00000505478_5end | |||
|coexpression_cluster_id=C446 | |||
|description=CAGE_peak_9_at_RAPGEF2_5end | |||
|id=chr4:160025300..160025318,+ | |||
|ontology_enrichment_celltype=CL:0000766!4.30e-08!76;CL:0002057!4.27e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000097;7.29e-33;5!CL:0000094;2.06e-20;8!CL:0000775;2.06e-20;3!CL:0000163;3.40e-18;9!CL:0000081;8.56e-15;11!CL:0000771;3.98e-14;2!CL:0000764;5.51e-14;2!CL:0000558;5.51e-14;2!CL:0000228;1.91e-07;1!CL:0002372;1.91e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,7.32e-33,5;CL:0002028,7.32e-33,5;CL:0000775,1.76e-20,3;CL:0000094,1.80e-20,8;CL:0000163,3.41e-18,9;CL:0000081,7.76e-15,11;CL:0000771,3.74e-14,2;CL:0000764,5.17e-14,2;CL:0000765,5.17e-14,2;CL:0000050,5.17e-14,2;CL:0000038,5.17e-14,2;CL:0000558,5.17e-14,2;CL:0000547,5.17e-14,2;CL:0000549,5.17e-14,2;CL:0000550,5.17e-14,2;CL:0000552,5.17e-14,2;CL:0000766,8.23e-09,72;CL:0000228,1.39e-07,1;CL:0002372,1.39e-07,1;CL:0000763,1.46e-07,108;CL:0000049,1.46e-07,108 | |||
|ontology_enrichment_development_v019=UBERON:0000358;9.12e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.95e-09!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002771;1.58e-13;2!UBERON:0000200;6.78e-10;6!UBERON:0001950;3.58e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,2.24e-13,2;UBERON:0000200,1.03e-09,6;UBERON:0001950,4.25e-07,20 | |||
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| |||
|short_description=p9@RAPGEF2 | |||
}} |
Revision as of 03:07, 13 September 2013
Short description: | p9@RAPGEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_RAPGEF2_5end |
Coexpression cluster: | C446_Neutrophils_Mast_Eosinophils_Whole_CD14_immature_optic |
Association with transcript: | -11bp_to_ENST00000505478_5end |
EntrezGene: | RAPGEF2 |
HGNC: | 16854 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 7.32e-33 | 5 |
basophil mast progenitor cell | 7.32e-33 | 5 |
neutrophil | 1.76e-20 | 3 |
granulocyte | 1.80e-20 | 8 |
endocrine cell | 3.41e-18 | 9 |
blood cell | 7.76e-15 | 11 |
eosinophil | 3.74e-14 | 2 |
erythroid lineage cell | 5.17e-14 | 2 |
erythroblast | 5.17e-14 | 2 |
megakaryocyte-erythroid progenitor cell | 5.17e-14 | 2 |
erythroid progenitor cell | 5.17e-14 | 2 |
reticulocyte | 5.17e-14 | 2 |
proerythroblast | 5.17e-14 | 2 |
basophilic erythroblast | 5.17e-14 | 2 |
polychromatophilic erythroblast | 5.17e-14 | 2 |
orthochromatic erythroblast | 5.17e-14 | 2 |
myeloid leukocyte | 8.23e-09 | 72 |
multinucleate cell | 1.39e-07 | 1 |
myotube | 1.39e-07 | 1 |
myeloid cell | 1.46e-07 | 108 |
common myeloid progenitor | 1.46e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 2.24e-13 | 2 |
gyrus | 1.03e-09 | 6 |
neocortex | 4.25e-07 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.