FFCP PHASE1:Hg19::chr4:3387976..3388053,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6002|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9994|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc003gha.2,uc010icv.2,uc011bvs.1_5end|description=CAGE_peak_2_at_RGS12_5end|id=chr4:3387976..3388053,+|ontology_enrichment_celltype=CL:0000557!1.54e-27!71;CL:0002009!3.36e-27!65;CL:0002194!2.56e-25!63;CL:0000576!2.56e-25!63;CL:0000040!2.56e-25!63;CL:0000559!2.56e-25!63;CL:0000839!4.88e-25!70;CL:0002057!6.81e-25!42;CL:0000766!1.26e-24!76;CL:0000860!3.09e-22!45;CL:0000763!3.73e-14!112;CL:0000049!3.73e-14!112;CL:0002076!8.53e-13!43;CL:0002368!9.90e-11!13;CL:0000738!1.30e-09!140;CL:0002031!1.44e-09!124;CL:0000223!3.38e-09!59;CL:0002087!3.67e-08!119;CL:0002159!6.32e-08!13;CL:0002251!3.12e-07!21;CL:0002202!7.26e-07!9;CL:0002632!7.26e-07!9;CL:0000066!9.74e-07!254|ontology_enrichment_celltype_v019=CL:0000473;8.33e-25;39!CL:0000234;8.33e-25;39!CL:0000860;7.09e-24;33!CL:0002057;7.09e-24;33!CL:0000576;1.53e-16;48!CL:0002076;1.35e-14;42!CL:0002368;2.96e-12;13!CL:0000766;3.52e-12;69!CL:0002251;4.80e-11;20!CL:0002159;5.98e-11;14!CL:0000622;2.25e-08;5!CL:0000235;2.68e-08;6!CL:0000244;4.73e-08;4!CL:0000731;4.73e-08;4!CL:0000840;5.72e-07;5!CL:0000154;7.26e-07;6!CL:0002202;9.09e-07;9!CL:0002632;9.09e-07;9|ontology_enrichment_celltype_v019_2=CL:0002009,5.93e-35,61;CL:0000473,7.59e-33,48;CL:0000234,7.59e-33,48;CL:0002194,3.48e-32,59;CL:0000576,3.48e-32,59;CL:0000040,3.48e-32,59;CL:0000559,3.48e-32,59;CL:0000557,4.07e-32,67;CL:0000839,7.55e-29,66;CL:0000766,1.20e-26,72;CL:0000860,2.48e-26,42;CL:0002057,2.48e-26,42;CL:0002076,1.14e-18,42;CL:0000763,1.16e-15,108;CL:0000049,1.16e-15,108;CL:0002031,6.00e-13,120;CL:0000223,2.39e-12,58;CL:0002368,2.96e-12,13;CL:0002087,2.14e-11,115;CL:0002251,4.37e-11,20;CL:0002159,6.02e-11,14;CL:0000738,1.34e-10,136;CL:0000066,1.50e-09,253;CL:0000622,2.07e-08,5;CL:0000235,2.58e-08,6;CL:0000244,4.69e-08,4;CL:0000731,4.69e-08,4;CL:0002032,3.50e-07,161;CL:0000837,3.50e-07,161;CL:0000840,5.99e-07,5;CL:0001029,5.99e-07,5;CL:0000154,6.79e-07,6;CL:0002202,8.96e-07,9;CL:0002632,8.96e-07,9|ontology_enrichment_development_v019=CL:0002057;3.48e-19;42!CL:0000223;8.64e-07;58|ontology_enrichment_disease=DOID:1749!2.63e-08!14|ontology_enrichment_disease_v019=DOID:1749;8.17e-11;14|ontology_enrichment_disease_v019_2=DOID:1749,8.10e-11,14|ontology_enrichment_uberon=UBERON:0002371!3.71e-22!80;UBERON:0001474!4.33e-20!86;UBERON:0002390!3.35e-18!102;UBERON:0003061!3.35e-18!102;UBERON:0004765!5.61e-18!101;UBERON:0001434!5.61e-18!101;UBERON:0002193!5.41e-17!112;UBERON:0002405!4.37e-16!115;UBERON:0000062!6.85e-15!511;UBERON:0000922!1.59e-11!612;UBERON:0002050!2.05e-11!605;UBERON:0005423!2.05e-11!605;UBERON:0000923!4.47e-11!604;UBERON:0005291!4.47e-11!604;UBERON:0006598!4.47e-11!604;UBERON:0002532!4.47e-11!604;UBERON:0000467!8.03e-11!625;UBERON:0000480!1.03e-10!626;UBERON:0000468!1.42e-09!659;UBERON:0001008!5.28e-08!45;UBERON:0001004!6.79e-08!72;UBERON:0006554!1.59e-07!44;UBERON:0000166!3.65e-07!21;UBERON:0000161!4.51e-07!35;UBERON:0003081!7.40e-07!216|ontology_enrichment_uberon_v019=UBERON:0000365;4.16e-09;5!UBERON:0000486;1.62e-08;12!UBERON:0000161;4.53e-08;19!UBERON:0000166;4.53e-08;19!UBERON:0000165;5.95e-08;28!UBERON:0006554;1.56e-07;30!UBERON:0001008;1.56e-07;30!UBERON:0005910;1.84e-07;6!UBERON:0003729;7.28e-07;13|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.15e-26,76;UBERON:0004765,1.14e-24,90;UBERON:0001474,1.03e-23,82;UBERON:0002405,9.29e-23,93;UBERON:0001434,9.27e-21,100;UBERON:0002390,1.22e-19,98;UBERON:0003061,1.22e-19,98;UBERON:0002193,1.20e-17,108;UBERON:0000161,1.04e-10,36;UBERON:0005423,3.02e-10,581;UBERON:0000922,1.77e-09,592;UBERON:0000166,1.85e-09,22;UBERON:0001004,3.68e-09,74;UBERON:0000365,4.55e-09,5;UBERON:0003102,2.98e-08,99;UBERON:0002204,3.05e-08,167;UBERON:0001008,6.19e-08,48;UBERON:0002050,1.12e-07,564;UBERON:0000165,1.41e-07,29;UBERON:0000930,1.41e-07,29;UBERON:0005910,1.98e-07,6;UBERON:0006554,2.49e-07,47;UBERON:0003729,7.13e-07,13|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0.655324116390517,0.527533956456907,0,0,1.34465029290355,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,1.15148819429164,0.309632246632152,29.4214791833257,36.4459161721683,32.5383528946773,0,0,0,0,0.601633342410425,0.217010870715852,1.79132379391939,0.647787332037959,1.80302897343931,8.72389432677388,12.4699061417307,9.94594650870046,5.34586784883075,9.86802931252382,6.50383378879718,1.1507695692886,4.09857130446561,2.83778675866302,3.10271112662957,2.5819387343353,2.70852973188684,9.41211697713024,16.1014628534129,7.86532195557796,3.36692281607993,11.2325159476633,5.75403413219137,1.31940520074686,7.97854630486527,4.68847225585964,0.870627715885752,3.40431134814684,1.86846674698672,2.26123798731069,4.69334626578181,4.34377689410233,0,1.47311054395026,1.89877432464531,1.05627643155971,1.27562579979026,0.419317291016752,0.336985893439485,0.150176892841506,0.16072558669708,1.14005097496499,1.79025009479181,1.461313230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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6002 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9994 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc003gha.2,uc010icv.2,uc011bvs.1_5end | |||
|description=CAGE_peak_2_at_RGS12_5end | |||
|id=chr4:3387976..3388053,+ | |||
|ontology_enrichment_celltype=CL:0000557!1.54e-27!71;CL:0002009!3.36e-27!65;CL:0002194!2.56e-25!63;CL:0000576!2.56e-25!63;CL:0000040!2.56e-25!63;CL:0000559!2.56e-25!63;CL:0000839!4.88e-25!70;CL:0002057!6.81e-25!42;CL:0000766!1.26e-24!76;CL:0000860!3.09e-22!45;CL:0000763!3.73e-14!112;CL:0000049!3.73e-14!112;CL:0002076!8.53e-13!43;CL:0002368!9.90e-11!13;CL:0000738!1.30e-09!140;CL:0002031!1.44e-09!124;CL:0000223!3.38e-09!59;CL:0002087!3.67e-08!119;CL:0002159!6.32e-08!13;CL:0002251!3.12e-07!21;CL:0002202!7.26e-07!9;CL:0002632!7.26e-07!9;CL:0000066!9.74e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.33e-25;39!CL:0000234;8.33e-25;39!CL:0000860;7.09e-24;33!CL:0002057;7.09e-24;33!CL:0000576;1.53e-16;48!CL:0002076;1.35e-14;42!CL:0002368;2.96e-12;13!CL:0000766;3.52e-12;69!CL:0002251;4.80e-11;20!CL:0002159;5.98e-11;14!CL:0000622;2.25e-08;5!CL:0000235;2.68e-08;6!CL:0000244;4.73e-08;4!CL:0000731;4.73e-08;4!CL:0000840;5.72e-07;5!CL:0000154;7.26e-07;6!CL:0002202;9.09e-07;9!CL:0002632;9.09e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,5.93e-35,61;CL:0000473,7.59e-33,48;CL:0000234,7.59e-33,48;CL:0002194,3.48e-32,59;CL:0000576,3.48e-32,59;CL:0000040,3.48e-32,59;CL:0000559,3.48e-32,59;CL:0000557,4.07e-32,67;CL:0000839,7.55e-29,66;CL:0000766,1.20e-26,72;CL:0000860,2.48e-26,42;CL:0002057,2.48e-26,42;CL:0002076,1.14e-18,42;CL:0000763,1.16e-15,108;CL:0000049,1.16e-15,108;CL:0002031,6.00e-13,120;CL:0000223,2.39e-12,58;CL:0002368,2.96e-12,13;CL:0002087,2.14e-11,115;CL:0002251,4.37e-11,20;CL:0002159,6.02e-11,14;CL:0000738,1.34e-10,136;CL:0000066,1.50e-09,253;CL:0000622,2.07e-08,5;CL:0000235,2.58e-08,6;CL:0000244,4.69e-08,4;CL:0000731,4.69e-08,4;CL:0002032,3.50e-07,161;CL:0000837,3.50e-07,161;CL:0000840,5.99e-07,5;CL:0001029,5.99e-07,5;CL:0000154,6.79e-07,6;CL:0002202,8.96e-07,9;CL:0002632,8.96e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;3.48e-19;42!CL:0000223;8.64e-07;58 | |||
|ontology_enrichment_disease=DOID:1749!2.63e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;8.17e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.10e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0002371!3.71e-22!80;UBERON:0001474!4.33e-20!86;UBERON:0002390!3.35e-18!102;UBERON:0003061!3.35e-18!102;UBERON:0004765!5.61e-18!101;UBERON:0001434!5.61e-18!101;UBERON:0002193!5.41e-17!112;UBERON:0002405!4.37e-16!115;UBERON:0000062!6.85e-15!511;UBERON:0000922!1.59e-11!612;UBERON:0002050!2.05e-11!605;UBERON:0005423!2.05e-11!605;UBERON:0000923!4.47e-11!604;UBERON:0005291!4.47e-11!604;UBERON:0006598!4.47e-11!604;UBERON:0002532!4.47e-11!604;UBERON:0000467!8.03e-11!625;UBERON:0000480!1.03e-10!626;UBERON:0000468!1.42e-09!659;UBERON:0001008!5.28e-08!45;UBERON:0001004!6.79e-08!72;UBERON:0006554!1.59e-07!44;UBERON:0000166!3.65e-07!21;UBERON:0000161!4.51e-07!35;UBERON:0003081!7.40e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;4.16e-09;5!UBERON:0000486;1.62e-08;12!UBERON:0000161;4.53e-08;19!UBERON:0000166;4.53e-08;19!UBERON:0000165;5.95e-08;28!UBERON:0006554;1.56e-07;30!UBERON:0001008;1.56e-07;30!UBERON:0005910;1.84e-07;6!UBERON:0003729;7.28e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.15e-26,76;UBERON:0004765,1.14e-24,90;UBERON:0001474,1.03e-23,82;UBERON:0002405,9.29e-23,93;UBERON:0001434,9.27e-21,100;UBERON:0002390,1.22e-19,98;UBERON:0003061,1.22e-19,98;UBERON:0002193,1.20e-17,108;UBERON:0000161,1.04e-10,36;UBERON:0005423,3.02e-10,581;UBERON:0000922,1.77e-09,592;UBERON:0000166,1.85e-09,22;UBERON:0001004,3.68e-09,74;UBERON:0000365,4.55e-09,5;UBERON:0003102,2.98e-08,99;UBERON:0002204,3.05e-08,167;UBERON:0001008,6.19e-08,48;UBERON:0002050,1.12e-07,564;UBERON:0000165,1.41e-07,29;UBERON:0000930,1.41e-07,29;UBERON:0005910,1.98e-07,6;UBERON:0006554,2.49e-07,47;UBERON:0003729,7.13e-07,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0.655324116390517,0.527533956456907,0,0,1.34465029290355,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,1.15148819429164,0.309632246632152,29.4214791833257,36.4459161721683,32.5383528946773,0,0,0,0,0.601633342410425,0.217010870715852,1.79132379391939,0.647787332037959,1.80302897343931,8.72389432677388,12.4699061417307,9.94594650870046,5.34586784883075,9.86802931252382,6.50383378879718,1.1507695692886,4.09857130446561,2.83778675866302,3.10271112662957,2.5819387343353,2.70852973188684,9.41211697713024,16.1014628534129,7.86532195557796,3.36692281607993,11.2325159476633,5.75403413219137,1.31940520074686,7.97854630486527,4.68847225585964,0.870627715885752,3.40431134814684,1.86846674698672,2.26123798731069,4.69334626578181,4.34377689410233,0,1.47311054395026,1.89877432464531,1.05627643155971,1.27562579979026,0.419317291016752,0.336985893439485,0.150176892841506,0.16072558669708,1.14005097496499,1.79025009479181,1.46131323011707,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.392937226493138,41.8939581536424,37.8200131640118,5.19275829847493,7.31344896656922,9.44001519683943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44.917687370681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.1467346199066,44.7303637768969,29.2540687296784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,34.0225884766739,30.3484733795573,12.5661215514539,22.1286383928886,0,0,0,0,0,0.144366447761074,0,0,0,0,2.95460407304877,10.9982004615442,8.17471392588005,22.4961201568265,41.1556214087206,34.7348988243847,20.4193431762494,19.7631078189494,23.7697261082431,1.47798971368783,0.264145302039678,0,0.288239906833923,0.25248486685276,0.952468414382536,1.14596527667483,0,0,0.411309970813294,0.300343057843917,1.71495859578347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.86495122564762,3.01354254859276,4.21667878966063,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0.909382714338778,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,26.4668540800336,19.7974126212177,0,0,0,4.51199612907412,4.1588282036384,0.784349769176855,4.38417673959782,1.47772280450026,0,0.170093705276516,0,0,0,0,4.58777291481069,2.49322802678617,0.895499018888713,0,0,0,0,0,0.103041011647722,0,0,26.4162147478239,19.5018073810956,0,0,0,0,0,0,0,0,0,38.3461003637469,34.0176419236238,76.4400147842559,15.5782982517547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0.354761064070598,0,0,0,0,30.7910760721639,40.888438807683,30.4894757611703,0.188287601553558,46.4945802484928,45.4872984302589,55.4287691920845,34.228786630837,0,0,0,0,0,0,0.540031437238115,0,0.106824071127473,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0.796991953004279,0,0,0,0,0,0,0,0,3.74844941420348,0,0,0,0,0,0,0,0.724999575434793,3.75518379342149,0.254253650292766,0.945550727071745,0,0,0,0,0,0,0,0,0,0,25.653968947263,4.15531395920504,0,0,0,0,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.67401132980677,0,0,0,3.7176277597097,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,6.17352103710579,7.22591414617341,1.39781334593624,0,0,0,0,25.896067402408,0.353024506766001,0.90392296312213,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,2.82832841540154,0,0,0,0,0.600420288709789,0.136905378891993,0,0,5.5206344398656,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,42.0701177201306,53.3923348644985,0.546746009922222,11.0693446907758,0.472834243795189,0.104909176269996,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0.129282956361551,0.13223260174269,0,0,0.533937062838473,0,4.14239055347196,0.496166021811951,0,0,10.8518013820931,0,0,0,0,0,0.886068179966986,0.244052529803926,0.1251909307065,0.573409195690071,0,0.434674820589684,0,2.12466693535581,1.81978941049977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.490696182767533,0,0,0,0,0,0,0,0,19.0236130498444,25.5051676613519,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578063025868136,0,0,0,0,0,0.161475645631851,0,7.36107888757692,4.36487976386639,9.53828712312731,3.81234698296116,0,0,0,0,0,0,0,0,0.443568258651136,0.135075169236789,0,0,0.0634158101939068,0,0,3.96968942711435,0,11.7541433428428,0,0,0,0,0.620916591138472,0,0,0.0679697329768317,0.0657727735628491,0,0,3.45369608542262,0.157115589916002,0,0,5.61411737168416,4.7775168788705,0.0714765441766563,0,0,0,0,23.2082103862601,17.9254400948647,4.83881763269864,0.860454717640555,0,0,3.38709640152743,0,0,0,0,0.196300467230486,0,0,0,0,5.82853191670967,0,0,0,0.33883824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| |||
|short_description=p2@RGS12 | |||
}} |
Revision as of 10:43, 13 September 2013
Short description: | p2@RGS12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RGS12_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc003gha.2, uc010icv.2, uc011bvs.1_5end |
EntrezGene: | RGS12 |
HGNC: | 9994 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.15e-26 | 76 |
skeletal element | 1.14e-24 | 90 |
bone element | 1.03e-23 | 82 |
immune system | 9.29e-23 | 93 |
skeletal system | 9.27e-21 | 100 |
hematopoietic system | 1.22e-19 | 98 |
blood island | 1.22e-19 | 98 |
hemolymphoid system | 1.20e-17 | 108 |
orifice | 1.04e-10 | 36 |
developing anatomical structure | 3.02e-10 | 581 |
embryo | 1.77e-09 | 592 |
oral opening | 1.85e-09 | 22 |
respiratory system | 3.68e-09 | 74 |
urothelium | 4.55e-09 | 5 |
surface structure | 2.98e-08 | 99 |
musculoskeletal system | 3.05e-08 | 167 |
renal system | 6.19e-08 | 48 |
embryonic structure | 1.12e-07 | 564 |
mouth | 1.41e-07 | 29 |
stomodeum | 1.41e-07 | 29 |
transitional epithelium | 1.98e-07 | 6 |
urinary system structure | 2.49e-07 | 47 |
mouth mucosa | 7.13e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.10e-11 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.