FFCP PHASE1:Mm9::chr15:90811421..90811433,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=186|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr15:90811421..90811433,-|id=chr15:90811421..90811433,-|ontology_enrichment_celltype=CL:0000540!5.11e-11!33;CL:0000047!5.11e-11!33;CL:0000031!5.11e-11!33;CL:0000404!5.11e-11!33;CL:0000393!1.55e-08!39;CL:0000211!1.55e-08!39;CL:0000117!5.36e-07!23;CL:0000337!5.36e-07!23|ontology_enrichment_celltype_v019_2=CL:0002610,2.56e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.11e-17!73;UBERON:0005743!4.11e-17!73;UBERON:0000073!9.64e-17!75;UBERON:0001016!9.64e-17!75;UBERON:0004121!2.55e-16!102;UBERON:0000924!2.55e-16!102;UBERON:0006601!2.55e-16!102;UBERON:0000033!1.21e-15!63;UBERON:0002346!2.02e-14!71;UBERON:0003075!2.02e-14!71;UBERON:0007284!2.02e-14!71;UBERON:0000955!3.79e-14!50;UBERON:0006238!3.79e-14!50;UBERON:0002616!8.13e-14!49;UBERON:0003056!2.81e-13!49;UBERON:0001049!7.82e-13!52;UBERON:0005068!7.82e-13!52;UBERON:0006241!7.82e-13!52;UBERON:0007135!7.82e-13!52;UBERON:0003080!1.10e-11!40;UBERON:0002780!3.55e-11!39;UBERON:0001890!3.55e-11!39;UBERON:0006240!3.55e-11!39;UBERON:0002020!3.13e-10!34;UBERON:0002791!4.30e-10!29;UBERON:0003528!4.30e-10!29;UBERON:0001893!4.30e-10!29;UBERON:0000025!1.74e-09!114;UBERON:0004111!3.06e-09!122;UBERON:0000956!7.74e-09!21;UBERON:0001869!7.74e-09!21;UBERON:0000203!7.74e-09!21;UBERON:0007811!1.26e-07!86;UBERON:0000475!1.57e-07!200;UBERON:0002021!1.81e-07!10;UBERON:0000411!1.81e-07!10;UBERON:0001950!1.81e-07!10;UBERON:0002619!2.56e-07!17;UBERON:0000153!5.95e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.40e-15,10;UBERON:0000411,2.40e-15,10;UBERON:0001950,2.40e-15,10;UBERON:0001017,5.02e-15,73;UBERON:0001016,1.95e-14,75;UBERON:0004121,4.94e-13,95;UBERON:0000924,4.94e-13,95;UBERON:0006601,4.94e-13,95;UBERON:0000073,1.22e-11,54;UBERON:0000956,1.56e-11,21;UBERON:0001869,1.56e-11,21;UBERON:0000203,1.56e-11,21;UBERON:0002619,2.10e-10,17;UBERON:0002616,6.11e-10,46;UBERON:0002346,6.62e-10,64;UBERON:0003075,6.62e-10,64;UBERON:0007284,6.62e-10,64;UBERON:0000955,1.23e-09,47;UBERON:0006238,1.23e-09,47;UBERON:0001049,1.66e-09,52;UBERON:0005068,1.66e-09,52;UBERON:0006241,1.66e-09,52;UBERON:0007135,1.66e-09,52;UBERON:0003080,2.58e-09,40;UBERON:0003528,3.37e-09,29;UBERON:0002791,3.37e-09,29;UBERON:0001893,3.37e-09,29;UBERON:0003056,3.82e-09,49;UBERON:0002780,1.96e-08,39;UBERON:0001890,1.96e-08,39;UBERON:0006240,1.96e-08,39;UBERON:0010371,4.99e-08,73;UBERON:0002020,2.10e-07,34;UBERON:0004684,2.56e-07,3;UBERON:0002275,2.56e-07,3;UBERON:0011216,5.80e-07,194|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,0.528990979272033,0,0,0,0,0,0,0,0,1.03689612308478,2.02508907497536,0.420649922702764,0.285650984403804,0,0.489963196859816,0.766763768145891,0.919218786610021,2.20231761998777,2.17068474744819,3.84016333140609,0.131886287730194,0.731901148819277,0.52091337055676,0.837548997004143,0.56276261003168,3.20876320331301,0.883885756421003,0.854230084794618,0.372798891650601,0.075726193333184,0.0755715601067855,0,0.860423876981386,0,0,0.649776417447669,0.448026887097336,0.140444420131752,0.511290967734173,0,0.70667914902068,0.14084341977668,0,0,0,0,0.253359865475099,0,0.45673551887624,0,0,0,0.304465478312141,0,0.301445281105245,0.470354828542819,0.376999773989026,0,0.144599356919912,0,0.485300549842228,0.220841518460394,0,0,0.585561594023094,0.41889341362691,0.255457055208591,0,0,0,1.19832511523858,0,0.879580464790051,0.695297280769106,1.53429274398198,1.87009240103604,1.78465389374533,0.203678727700633,0,0,0.420883711772948,0.260240885925407,0,0.360124259610698,1.65775299619287,0.816437989815934,1.7935920839879,0.562210347358373,0.517406741478031,0.215567992932842,0.189106080167819,0,0,0.556094498451196,0,0.823128545631774,0,0,0,0,0.207125772535502,0.703578179943289,0.180062061461015,0,0.393528463494808,0.308534225774757,0.465067889500816,0,0.350296027101508,0.658239399653922,0.985004784474571,0.243206428637567,0.146199987425332,0,0,0.630869845692382,2.46971069710283,0.330418782983798,0,0,0.232236671860439,0.128867461322093,0.403367049246685,0,0,0,0.329397909448022,1.25667604400135,0.198956472041151,0.58489226135736,0,1.08069024937347,0.398282546508734,0,0.571242563048644,0,0.407302655690628,0.775809948670503,1.1221731182451,0.442655759869801,2.36176236767363,3.1399745568275,0.493588655687202,0.296452627087149,0,0,0.224862112384854,0,0,0,0,2.2698931748505,1.37280706594041,15.814502718009,1.11642284300551,1.5601883655728,1.76805214562978,0.717589654087649,0,0.369506380333209,0,0,0,0.234690248288502,0,0,0.390267295715598,0.472905432318573,0.8858587585951,0.318909537314974,0.655453258862952,0.518054945597687,0.578596234326046,0,0,0,0,1.76605648986571,1.28932855251423,0.491804836130026,0.252470927204373,0.94652465824877,0.390438744296638,1.50796378412959,1.67278158566786,1.33679204449436,0.566153061577665,2.42886421004937,0.876767573733936,1.58115111178609,0.642642632843614,0,0,0,0,0,0.485561272309963,0,0.565815239267694,0,0,0.258428293168221,0,0.712994756769443,0.948110273807448,1.05418608574999,1.03135543248187,0.340439605753788,0.36012218806262,0,0.428674070063185,0.177340233642274,0.535106452806212,0.329098041204242,0.608929898229199,0,0,0.220528398054962,0.49465875882444,0,0.180938774784468,0.477489376012546,0.656563598980245,0,2.22510362412612,0.170870880797853,0,0,0,0,0,0,0,0,0,0,0,0.86404272657441,1.88179466413022,0.87345025498471,1.61837215661785,0.578574190077352,0.26175594198403,0.648074866458964,1.24267862617385,0,0,0,0,0,0.168956125490778,0.352071715937262,0.39061315453185,0.838874755405687,0.966336483304024,0,0,0,0.102710957164827,0.389762468933385,0,0,0,0,0.201932899896295,0.15241361331,0,0.0974578807397524,0,0.116876902181569,0,0,0.0897138566094757,0,0,0.187682475451182,0,0.428736758158132,0,0.564751842617067,1.38097570952153,2.29158205375759,1.03111909406213,2.74033007908257,3.0215755895588,1.35004500046361,2.2516060161211,2.26571204492102,2.07104124700728,0.726511433089237,0,0,0.243106717068294,0,0,0,0,0,0,0,0.188626341386076,0.468207537349412,0.128050304809739,0.229741875822453,0,0.231768651889711,0.578727661391115,0,0.147198920134397,0.342869252385415,0.70990322463735,0,0.290692833264657,0.376437521661322,0.169229215783353,0.365855945745545,0,0,0,0,0.29551344712669,0,0.309873682371932,0,0.249810577937946,0,0,0,0.220591419119515,0|short_description=p@chr15:90811421..90811433,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=186 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr15:90811421..90811433,- | |||
|id=chr15:90811421..90811433,- | |||
|ontology_enrichment_celltype=CL:0000540!5.11e-11!33;CL:0000047!5.11e-11!33;CL:0000031!5.11e-11!33;CL:0000404!5.11e-11!33;CL:0000393!1.55e-08!39;CL:0000211!1.55e-08!39;CL:0000117!5.36e-07!23;CL:0000337!5.36e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,2.56e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.11e-17!73;UBERON:0005743!4.11e-17!73;UBERON:0000073!9.64e-17!75;UBERON:0001016!9.64e-17!75;UBERON:0004121!2.55e-16!102;UBERON:0000924!2.55e-16!102;UBERON:0006601!2.55e-16!102;UBERON:0000033!1.21e-15!63;UBERON:0002346!2.02e-14!71;UBERON:0003075!2.02e-14!71;UBERON:0007284!2.02e-14!71;UBERON:0000955!3.79e-14!50;UBERON:0006238!3.79e-14!50;UBERON:0002616!8.13e-14!49;UBERON:0003056!2.81e-13!49;UBERON:0001049!7.82e-13!52;UBERON:0005068!7.82e-13!52;UBERON:0006241!7.82e-13!52;UBERON:0007135!7.82e-13!52;UBERON:0003080!1.10e-11!40;UBERON:0002780!3.55e-11!39;UBERON:0001890!3.55e-11!39;UBERON:0006240!3.55e-11!39;UBERON:0002020!3.13e-10!34;UBERON:0002791!4.30e-10!29;UBERON:0003528!4.30e-10!29;UBERON:0001893!4.30e-10!29;UBERON:0000025!1.74e-09!114;UBERON:0004111!3.06e-09!122;UBERON:0000956!7.74e-09!21;UBERON:0001869!7.74e-09!21;UBERON:0000203!7.74e-09!21;UBERON:0007811!1.26e-07!86;UBERON:0000475!1.57e-07!200;UBERON:0002021!1.81e-07!10;UBERON:0000411!1.81e-07!10;UBERON:0001950!1.81e-07!10;UBERON:0002619!2.56e-07!17;UBERON:0000153!5.95e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.40e-15,10;UBERON:0000411,2.40e-15,10;UBERON:0001950,2.40e-15,10;UBERON:0001017,5.02e-15,73;UBERON:0001016,1.95e-14,75;UBERON:0004121,4.94e-13,95;UBERON:0000924,4.94e-13,95;UBERON:0006601,4.94e-13,95;UBERON:0000073,1.22e-11,54;UBERON:0000956,1.56e-11,21;UBERON:0001869,1.56e-11,21;UBERON:0000203,1.56e-11,21;UBERON:0002619,2.10e-10,17;UBERON:0002616,6.11e-10,46;UBERON:0002346,6.62e-10,64;UBERON:0003075,6.62e-10,64;UBERON:0007284,6.62e-10,64;UBERON:0000955,1.23e-09,47;UBERON:0006238,1.23e-09,47;UBERON:0001049,1.66e-09,52;UBERON:0005068,1.66e-09,52;UBERON:0006241,1.66e-09,52;UBERON:0007135,1.66e-09,52;UBERON:0003080,2.58e-09,40;UBERON:0003528,3.37e-09,29;UBERON:0002791,3.37e-09,29;UBERON:0001893,3.37e-09,29;UBERON:0003056,3.82e-09,49;UBERON:0002780,1.96e-08,39;UBERON:0001890,1.96e-08,39;UBERON:0006240,1.96e-08,39;UBERON:0010371,4.99e-08,73;UBERON:0002020,2.10e-07,34;UBERON:0004684,2.56e-07,3;UBERON:0002275,2.56e-07,3;UBERON:0011216,5.80e-07,194 | |||
|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,0.528990979272033,0,0,0,0,0,0,0,0,1.03689612308478,2.02508907497536,0.420649922702764,0.285650984403804,0,0.489963196859816,0.766763768145891,0.919218786610021,2.20231761998777,2.17068474744819,3.84016333140609,0.131886287730194,0.731901148819277,0.52091337055676,0.837548997004143,0.56276261003168,3.20876320331301,0.883885756421003,0.854230084794618,0.372798891650601,0.075726193333184,0.0755715601067855,0,0.860423876981386,0,0,0.649776417447669,0.448026887097336,0.140444420131752,0.511290967734173,0,0.70667914902068,0.14084341977668,0,0,0,0,0.253359865475099,0,0.45673551887624,0,0,0,0.304465478312141,0,0.301445281105245,0.470354828542819,0.376999773989026,0,0.144599356919912,0,0.485300549842228,0.220841518460394,0,0,0.585561594023094,0.41889341362691,0.255457055208591,0,0,0,1.19832511523858,0,0.879580464790051,0.695297280769106,1.53429274398198,1.87009240103604,1.78465389374533,0.203678727700633,0,0,0.420883711772948,0.260240885925407,0,0.360124259610698,1.65775299619287,0.816437989815934,1.7935920839879,0.562210347358373,0.517406741478031,0.215567992932842,0.189106080167819,0,0,0.556094498451196,0,0.823128545631774,0,0,0,0,0.207125772535502,0.703578179943289,0.180062061461015,0,0.393528463494808,0.308534225774757,0.465067889500816,0,0.350296027101508,0.658239399653922,0.985004784474571,0.243206428637567,0.146199987425332,0,0,0.630869845692382,2.46971069710283,0.330418782983798,0,0,0.232236671860439,0.128867461322093,0.403367049246685,0,0,0,0.329397909448022,1.25667604400135,0.198956472041151,0.58489226135736,0,1.08069024937347,0.398282546508734,0,0.571242563048644,0,0.407302655690628,0.775809948670503,1.1221731182451,0.442655759869801,2.36176236767363,3.1399745568275,0.493588655687202,0.296452627087149,0,0,0.224862112384854,0,0,0,0,2.2698931748505,1.37280706594041,15.814502718009,1.11642284300551,1.5601883655728,1.76805214562978,0.717589654087649,0,0.369506380333209,0,0,0,0.234690248288502,0,0,0.390267295715598,0.472905432318573,0.8858587585951,0.318909537314974,0.655453258862952,0.518054945597687,0.578596234326046,0,0,0,0,1.76605648986571,1.28932855251423,0.491804836130026,0.252470927204373,0.94652465824877,0.390438744296638,1.50796378412959,1.67278158566786,1.33679204449436,0.566153061577665,2.42886421004937,0.876767573733936,1.58115111178609,0.642642632843614,0,0,0,0,0,0.485561272309963,0,0.565815239267694,0,0,0.258428293168221,0,0.712994756769443,0.948110273807448,1.05418608574999,1.03135543248187,0.340439605753788,0.36012218806262,0,0.428674070063185,0.177340233642274,0.535106452806212,0.329098041204242,0.608929898229199,0,0,0.220528398054962,0.49465875882444,0,0.180938774784468,0.477489376012546,0.656563598980245,0,2.22510362412612,0.170870880797853,0,0,0,0,0,0,0,0,0,0,0,0.86404272657441,1.88179466413022,0.87345025498471,1.61837215661785,0.578574190077352,0.26175594198403,0.648074866458964,1.24267862617385,0,0,0,0,0,0.168956125490778,0.352071715937262,0.39061315453185,0.838874755405687,0.966336483304024,0,0,0,0.102710957164827,0.389762468933385,0,0,0,0,0.201932899896295,0.15241361331,0,0.0974578807397524,0,0.116876902181569,0,0,0.0897138566094757,0,0,0.187682475451182,0,0.428736758158132,0,0.564751842617067,1.38097570952153,2.29158205375759,1.03111909406213,2.74033007908257,3.0215755895588,1.35004500046361,2.2516060161211,2.26571204492102,2.07104124700728,0.726511433089237,0,0,0.243106717068294,0,0,0,0,0,0,0,0.188626341386076,0.468207537349412,0.128050304809739,0.229741875822453,0,0.231768651889711,0.578727661391115,0,0.147198920134397,0.342869252385415,0.70990322463735,0,0.290692833264657,0.376437521661322,0.169229215783353,0.365855945745545,0,0,0,0,0.29551344712669,0,0.309873682371932,0,0.249810577937946,0,0,0,0.220591419119515,0 | |||
|short_description=p@chr15:90811421..90811433,- | |||
}} |
Revision as of 11:36, 13 September 2013
Short description: | p@chr15:90811421..90811433, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:90811421..90811433, - |
Coexpression cluster: | MCL_coexpression_mm9:186 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 2.56e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 2.40e-15 | 10 |
visual cortex | 2.40e-15 | 10 |
neocortex | 2.40e-15 | 10 |
central nervous system | 5.02e-15 | 73 |
nervous system | 1.95e-14 | 75 |
ectoderm-derived structure | 4.94e-13 | 95 |
ectoderm | 4.94e-13 | 95 |
presumptive ectoderm | 4.94e-13 | 95 |
regional part of nervous system | 1.22e-11 | 54 |
cerebral cortex | 1.56e-11 | 21 |
cerebral hemisphere | 1.56e-11 | 21 |
pallium | 1.56e-11 | 21 |
regional part of cerebral cortex | 2.10e-10 | 17 |
regional part of brain | 6.11e-10 | 46 |
neurectoderm | 6.62e-10 | 64 |
neural plate | 6.62e-10 | 64 |
presumptive neural plate | 6.62e-10 | 64 |
brain | 1.23e-09 | 47 |
future brain | 1.23e-09 | 47 |
neural tube | 1.66e-09 | 52 |
neural rod | 1.66e-09 | 52 |
future spinal cord | 1.66e-09 | 52 |
neural keel | 1.66e-09 | 52 |
anterior neural tube | 2.58e-09 | 40 |
brain grey matter | 3.37e-09 | 29 |
regional part of telencephalon | 3.37e-09 | 29 |
telencephalon | 3.37e-09 | 29 |
pre-chordal neural plate | 3.82e-09 | 49 |
regional part of forebrain | 1.96e-08 | 39 |
forebrain | 1.96e-08 | 39 |
future forebrain | 1.96e-08 | 39 |
ecto-epithelium | 4.99e-08 | 73 |
gray matter | 2.10e-07 | 34 |
raphe nuclei | 2.56e-07 | 3 |
reticular formation | 2.56e-07 | 3 |
organ system subdivision | 5.80e-07 | 194 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.