FFCP PHASE1:Mm9::chr15:91503513..91503536,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66725|HGNC=|MCL_coexpression_id=3|UniProt=Q5S006|association_with_transcript=-69bp_to_ENSMUST00000060642_5end|description=CAGE_peak_2_at_Lrrk2_5end|id=chr15:91503513..91503536,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002048,6.76e-07,14;UBERON:0000117,6.76e-07,14;UBERON:0000171,6.76e-07,14;UBERON:0000170,6.76e-07,14;UBERON:0005597,6.76e-07,14;UBERON:0000118,6.76e-07,14|phase1_expression=0.960893082628764,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0,0,1.99865857089398,1.61980213911861,0.699561878128147,6.62470547252299,7.95263714913285,5.09267582157636,2.29616883407888,0,0,0.319984845586813,0,0,0,0,0,0,0,0,0,0,0,0,0,48.5496691654813,23.440060335714,42.9289470058515,59.9996117791635,45.0810020072574,40.2973593015858,1.38486499773135,2.73717714292689,3.85448179539531,0,0.436050312760893,0,0.388859798148567,0.279972843250725,0,5.70460860596304,0,0.336093799142464,0.771778308107841,0.85960031981627,1.03134418455488,0.202316460859598,0,0,1.69422266034566,0,0,0,0,0.599200221036809,0.768436610643109,0.103689612308478,0.135005938331691,0,0,0,0,0.0958454710182364,0,1.10115880999389,1.0214987046815,1.38245879930619,0,0.0914876436024097,0.52091337055676,0.279182999001381,1.68828783009504,0.61119299110724,0.883885756421003,0.427115042397309,0,0.37863096666592,1.13357340160178,4.92769630792852,1.72084775396277,0,0,0,0.448026887097336,1.68533304158102,1.1930122580464,0.519572009205738,0.35333957451034,0,0,5.09610479413291,28.4426681261332,0.432982082022428,0.253359865475099,0.505524445014783,2.2836775943812,4.91981978929626,0.593768556259299,0.867426633830679,0.304465478312141,0.922461989024234,0.60289056221049,1.76383060703557,2.26199864393416,0,0.722996784599558,9.73071607144862,0.970601099684455,0.883366073841574,2.90925151881133,0,2.34224637609238,1.67557365450764,0,0.838705871541442,0.599902730993408,0.889491589511453,0.299581278809645,10.5225138648284,0.251308704225729,4.34560800480691,4.09144731728529,1.45451631191692,3.73154905055843,1.32391173005411,2.23932547098167,0.505445516867349,8.41767423545896,0.650602214813519,0.229902104433473,0.180062129805349,0.90422890701429,0.612328492361951,0.2562274405697,0.937017245597288,1.81092359517311,0.862271971731369,0.378212160335639,1.05570674498369,1.09597866213787,2.78047249225598,1.74126083261083,1.02891068203972,0.796137067273973,0.702213187313235,1.28673953557358,1.70498099637356,0.414251545071004,0.234526059981096,0.180062061461015,0.710234206755631,1.37734962223183,0.617068451549513,0.930135779001631,0.536546802799238,0.934122738937356,0.658239399653922,1.31333971263276,0.972825714550269,1.16959989940266,1.3173006917463,2.14730270016595,1.89260953707715,0.205809224758569,0,0,0,0,0.38660238396628,0.201683524623343,0.444756087689741,0.570676878337677,0.474529061544512,0.823494773620054,1.25667604400135,0.596869416123452,0.974820435595601,0.898819408654221,0.648414149624083,0.398282546508734,0.379335801906163,0.571242563048644,0,1.4255592949172,1.93952487167626,1.68325967736765,4.11037491307672,6.34723636312289,6.12295038581362,5.05928372079382,0.296452627087149,0.166845105716094,0.589676985339609,0.674586337154561,0.608580364165509,1.4470629585145,2.03700681425136,2.30156909960649,0.810676133875177,1.37280706594041,0,1.86070473834252,0.936113019343682,0,0.179397413521912,0,9.60716588866344,0.37898282354097,0.651859905768103,1.18821560042632,1.87752198630802,5.69521275302174,7.37935286746643,7.02481132288076,7.09358148477859,3.76489972402917,3.50800491046472,4.42430949732493,4.66249451037918,8.96824163205372,1.50791283939272,0,1.47529281905711,0,0.160550589987792,0.703270119553219,1.3114795630134,0.757412781613119,0,0.780877488593277,0.646270193198397,0.238968797952552,0.445597348164788,0.566153061577665,1.21443210502468,1.75353514746787,0.395287777946524,3.53453448063988,2.2710413633323,0.890328018336276,0.977321756121456,0.164970122972535,1.32745138339963,0,0,0,0.590603785761546,0.922305443831782,0.775284879504663,1.09060118843252,0,0.316036757935816,0,0,0,0.720244376125241,0.388076051348264,0.428674070063185,0.886701168211368,0.356737635204141,0.329098041204242,0.608929898229199,0,0.21183207086382,0,0.49465875882444,0.968786560175433,0.784068024066026,0.716234064018819,0,0,0.370850604021019,2.56306321196779,2.06386867963222,3.1483069652851,0.941842285023455,1.50363650493128,1.83022538565218,0.679913719975421,1.39951452323658,1.38199973804424,0,0.474503990371703,0.813277868507395,0.756037385752609,1.46361807210128,0.87345025498471,1.34864346384821,1.32245529160537,0.523511883968059,0.388844919875379,0,0.56369293868419,1.19613236835183,0.66183396182839,0.972255941720238,1.16243841129958,1.520605129417,1.29092962510329,0.651021924219751,0.419437377702843,0.241584120826006,0.288030006257865,0.316011120628178,0,0.308132871494482,0.25984164595559,0.716106782669926,0.198681354781265,0,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| ||
|EntrezGene=66725 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=Q5S006 | |||
|association_with_transcript=-69bp_to_ENSMUST00000060642_5end | |||
|description=CAGE_peak_2_at_Lrrk2_5end | |||
|id=chr15:91503513..91503536,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002048,6.76e-07,14;UBERON:0000117,6.76e-07,14;UBERON:0000171,6.76e-07,14;UBERON:0000170,6.76e-07,14;UBERON:0005597,6.76e-07,14;UBERON:0000118,6.76e-07,14 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0,0,1.99865857089398,1.61980213911861,0.699561878128147,6.62470547252299,7.95263714913285,5.09267582157636,2.29616883407888,0,0,0.319984845586813,0,0,0,0,0,0,0,0,0,0,0,0,0,48.5496691654813,23.440060335714,42.9289470058515,59.9996117791635,45.0810020072574,40.2973593015858,1.38486499773135,2.73717714292689,3.85448179539531,0,0.436050312760893,0,0.388859798148567,0.279972843250725,0,5.70460860596304,0,0.336093799142464,0.771778308107841,0.85960031981627,1.03134418455488,0.202316460859598,0,0,1.69422266034566,0,0,0,0,0.599200221036809,0.768436610643109,0.103689612308478,0.135005938331691,0,0,0,0,0.0958454710182364,0,1.10115880999389,1.0214987046815,1.38245879930619,0,0.0914876436024097,0.52091337055676,0.279182999001381,1.68828783009504,0.61119299110724,0.883885756421003,0.427115042397309,0,0.37863096666592,1.13357340160178,4.92769630792852,1.72084775396277,0,0,0,0.448026887097336,1.68533304158102,1.1930122580464,0.519572009205738,0.35333957451034,0,0,5.09610479413291,28.4426681261332,0.432982082022428,0.253359865475099,0.505524445014783,2.2836775943812,4.91981978929626,0.593768556259299,0.867426633830679,0.304465478312141,0.922461989024234,0.60289056221049,1.76383060703557,2.26199864393416,0,0.722996784599558,9.73071607144862,0.970601099684455,0.883366073841574,2.90925151881133,0,2.34224637609238,1.67557365450764,0,0.838705871541442,0.599902730993408,0.889491589511453,0.299581278809645,10.5225138648284,0.251308704225729,4.34560800480691,4.09144731728529,1.45451631191692,3.73154905055843,1.32391173005411,2.23932547098167,0.505445516867349,8.41767423545896,0.650602214813519,0.229902104433473,0.180062129805349,0.90422890701429,0.612328492361951,0.2562274405697,0.937017245597288,1.81092359517311,0.862271971731369,0.378212160335639,1.05570674498369,1.09597866213787,2.78047249225598,1.74126083261083,1.02891068203972,0.796137067273973,0.702213187313235,1.28673953557358,1.70498099637356,0.414251545071004,0.234526059981096,0.180062061461015,0.710234206755631,1.37734962223183,0.617068451549513,0.930135779001631,0.536546802799238,0.934122738937356,0.658239399653922,1.31333971263276,0.972825714550269,1.16959989940266,1.3173006917463,2.14730270016595,1.89260953707715,0.205809224758569,0,0,0,0,0.38660238396628,0.201683524623343,0.444756087689741,0.570676878337677,0.474529061544512,0.823494773620054,1.25667604400135,0.596869416123452,0.974820435595601,0.898819408654221,0.648414149624083,0.398282546508734,0.379335801906163,0.571242563048644,0,1.4255592949172,1.93952487167626,1.68325967736765,4.11037491307672,6.34723636312289,6.12295038581362,5.05928372079382,0.296452627087149,0.166845105716094,0.589676985339609,0.674586337154561,0.608580364165509,1.4470629585145,2.03700681425136,2.30156909960649,0.810676133875177,1.37280706594041,0,1.86070473834252,0.936113019343682,0,0.179397413521912,0,9.60716588866344,0.37898282354097,0.651859905768103,1.18821560042632,1.87752198630802,5.69521275302174,7.37935286746643,7.02481132288076,7.09358148477859,3.76489972402917,3.50800491046472,4.42430949732493,4.66249451037918,8.96824163205372,1.50791283939272,0,1.47529281905711,0,0.160550589987792,0.703270119553219,1.3114795630134,0.757412781613119,0,0.780877488593277,0.646270193198397,0.238968797952552,0.445597348164788,0.566153061577665,1.21443210502468,1.75353514746787,0.395287777946524,3.53453448063988,2.2710413633323,0.890328018336276,0.977321756121456,0.164970122972535,1.32745138339963,0,0,0,0.590603785761546,0.922305443831782,0.775284879504663,1.09060118843252,0,0.316036757935816,0,0,0,0.720244376125241,0.388076051348264,0.428674070063185,0.886701168211368,0.356737635204141,0.329098041204242,0.608929898229199,0,0.21183207086382,0,0.49465875882444,0.968786560175433,0.784068024066026,0.716234064018819,0,0,0.370850604021019,2.56306321196779,2.06386867963222,3.1483069652851,0.941842285023455,1.50363650493128,1.83022538565218,0.679913719975421,1.39951452323658,1.38199973804424,0,0.474503990371703,0.813277868507395,0.756037385752609,1.46361807210128,0.87345025498471,1.34864346384821,1.32245529160537,0.523511883968059,0.388844919875379,0,0.56369293868419,1.19613236835183,0.66183396182839,0.972255941720238,1.16243841129958,1.520605129417,1.29092962510329,0.651021924219751,0.419437377702843,0.241584120826006,0.288030006257865,0.316011120628178,0,0.308132871494482,0.25984164595559,0.716106782669926,0.198681354781265,0,0.147689527174577,0.100966449948148,0.0762068066549998,0.201652370273681,0.292373642219257,0.288635524920988,0.116876902181569,0.906921534460845,0.443971906748129,0.0897138566094757,0.167884616364078,1.73870634628971,0.375364950902364,0.183151624267265,0.643105137237198,2.50786052017682,1.12950368523413,1.38097570952153,2.86447756719698,3.60891682921744,3.42541259885321,6.0431511791176,3.37511250115903,4.5032120322422,4.07828168085784,6.21312374102184,0.415149390336707,0.399024873401031,1.19513524027894,0.972426868273176,0.419226325255965,0.7353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| |||
|short_description=p2@Lrrk2 | |||
}} | |||
Revision as of 11:37, 13 September 2013
| Short description: | p2@Lrrk2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Lrrk2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3 |
| Association with transcript: | -69bp_to_ENSMUST00000060642_5end |
| EntrezGene: | Lrrk2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| lung | 6.76e-07 | 14 |
| respiratory tube | 6.76e-07 | 14 |
| respiration organ | 6.76e-07 | 14 |
| pair of lungs | 6.76e-07 | 14 |
| lung primordium | 6.76e-07 | 14 |
| lung bud | 6.76e-07 | 14 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
