FFCP PHASE1:Mm9::chr16:16359109..16359133,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=74006|HGNC=|MCL_coexpression_id=0|UniProt=Q8K1M6,E9PUD2|association_with_transcript=0bp_to_ENSMUST00000023477,ENSMUST00000047122,ENSMUST00000096229,ENSMUST00000115749,NM_001025947,NM_152816,uc007yil.1,uc007yim.1,uc007yin.1,uc007yio.1_5end|description=CAGE_peak_3_at_Dnm1l_5end|id=chr16:16359109..16359133,-|ontology_enrichment_celltype=CL:0000117!7.88e-07!23;CL:0000337!7.88e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,8.51e-08,23;CL:0000337,8.51e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!5.19e-14!63;UBERON:0001049!2.08e-13!52;UBERON:0005068!2.08e-13!52;UBERON:0006241!2.08e-13!52;UBERON:0007135!2.08e-13!52;UBERON:0000955!6.76e-13!50;UBERON:0006238!6.76e-13!50;UBERON:0002616!2.23e-12!49;UBERON:0002346!2.82e-11!71;UBERON:0003075!2.82e-11!71;UBERON:0007284!2.82e-11!71;UBERON:0003056!5.83e-11!49;UBERON:0002020!1.58e-10!34;UBERON:0000073!3.64e-10!75;UBERON:0001016!3.64e-10!75;UBERON:0001017!4.11e-10!73;UBERON:0005743!4.11e-10!73;UBERON:0003080!7.26e-10!40;UBERON:0002780!2.57e-09!39;UBERON:0001890!2.57e-09!39;UBERON:0006240!2.57e-09!39;UBERON:0004121!5.89e-09!102;UBERON:0000924!5.89e-09!102;UBERON:0006601!5.89e-09!102;UBERON:0007811!8.63e-09!86;UBERON:0002791!2.74e-08!29;UBERON:0003528!2.74e-08!29;UBERON:0001893!2.74e-08!29;UBERON:0000153!2.82e-08!94;UBERON:0002021!7.34e-07!10;UBERON:0000411!7.34e-07!10;UBERON:0001950!7.34e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.74e-16,92;UBERON:0000073,6.50e-16,54;UBERON:0001049,2.03e-14,52;UBERON:0005068,2.03e-14,52;UBERON:0006241,2.03e-14,52;UBERON:0007135,2.03e-14,52;UBERON:0002346,9.01e-14,64;UBERON:0003075,9.01e-14,64;UBERON:0007284,9.01e-14,64;UBERON:0001017,2.93e-12,73;UBERON:0001016,5.99e-12,75;UBERON:0010371,7.45e-12,73;UBERON:0000955,8.47e-12,47;UBERON:0006238,8.47e-12,47;UBERON:0002020,1.27e-11,34;UBERON:0003056,2.28e-11,49;UBERON:0002616,3.07e-11,46;UBERON:0004121,4.37e-11,95;UBERON:0000924,4.37e-11,95;UBERON:0006601,4.37e-11,95;UBERON:0003080,2.42e-10,40;UBERON:0002780,9.96e-10,39;UBERON:0001890,9.96e-10,39;UBERON:0006240,9.96e-10,39;UBERON:0003528,4.62e-09,29;UBERON:0002791,4.62e-09,29;UBERON:0001893,4.62e-09,29;UBERON:0002021,1.10e-07,10;UBERON:0000411,1.10e-07,10;UBERON:0001950,1.10e-07,10;UBERON:0000025,5.25e-07,114|phase1_expression=1.28119077683835,0.348975407639361,0.454999239389536,0.30246421130683,0.500895729946347,0,0.233612640595526,0.129123323441576,0.140788722151667,0.234064526321993,0.513653904676515,0.159544317990673,0,0.0874204024189974,0,0,0,0.315462165358238,0.411343300817216,0.42438965179803,12.7564935226605,0.992909512008853,1.04479915655574,0,0.22940928106717,0,0.430761996159075,0.430942465371778,0.190023419456374,0.504060259519861,0,0,0,0,0.288851619751275,0.332469290716985,0.204169356262369,0,0,1.0470474879476,0.588231488031014,0,0,0.251793635951155,0.506884656097573,0,0.782391344348039,0,0.659058548203415,0.58328969722285,0.139986421625363,0,0.167782606057736,0,0.336093799142464,0.514518872071894,0.85960031981627,0.515672092277442,2.22548106945558,3.1739458756322,3.80298842103708,0,0.889294796111139,0,0,0,0.299600110518405,0,1.14058573539325,0.405017814995072,0.630974884054146,2.28520787523043,3.09215957332259,1.34739879136449,1.24599112323707,0,15.4162233399144,8.93811366596314,9.5236050618871,2.2420668914133,3.20206752608434,2.6045668527838,8.09630697104005,5.6276261003168,6.26472815884921,7.66034322231536,6.69146899755784,3.16879057903011,1.4387976733305,0.982430281388212,0.869593466105033,0,0,0,0.649776417447669,0,2.24711072210803,0.511290967734173,0.259786004602869,0.35333957451034,1.83096445709685,0,2.54805239706646,0,0.216491041011214,0.506719730950197,0.505524445014783,3.88225191044804,1.55362730188303,0.890652834388949,1.21439728736295,0.608930956624282,0.230615497256059,0.301445281105245,1.52865319276416,0.753999547978053,0.247194967734374,0.578397427679647,0.884610551949874,1.94120219936891,0.883366073841574,0,0,2.63502717310392,3.35114730901528,0,0.838705871541442,0,1.27070227073065,8.08869452786043,5.49000723382352,4.27224797183739,5.38855392596057,8.69432554923124,8.3115217823824,8.27430441645564,1.42575109390443,0.373220911830279,3.79084137650512,0.631325567659422,1.43132487258974,0.459804208866946,3.06105620669094,2.10986744970001,2.99360596265843,3.71529788826064,1.96773621575431,1.55222022443409,1.07783996466421,0.945530400839096,0.879755620819744,0.43839146485515,1.39023624612799,0.696504333044333,0.61734640922383,1.19420560091096,1.40442637462647,0.51469581422943,0.284163499395593,2.69263504296152,2.11073453982987,1.98068267607116,2.13070262026689,3.34499193970586,3.85667782218446,3.48800917125612,2.41446061259657,4.08678698285093,2.30383789878873,1.64167464079095,2.51313309592153,2.19299981137998,3.51280184465681,1.74468344388483,4.41608891984667,4.93942139420565,0.330418782983798,0.264450566663544,0.639864751605702,0.928946687441754,1.15980715189884,1.21010114774006,0.444756087689741,0.570676878337677,0.474529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| ||
|EntrezGene=74006 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q8K1M6,E9PUD2 | |||
|association_with_transcript=0bp_to_ENSMUST00000023477,ENSMUST00000047122,ENSMUST00000096229,ENSMUST00000115749,NM_001025947,NM_152816,uc007yil.1,uc007yim.1,uc007yin.1,uc007yio.1_5end | |||
|description=CAGE_peak_3_at_Dnm1l_5end | |||
|id=chr16:16359109..16359133,- | |||
|ontology_enrichment_celltype=CL:0000117!7.88e-07!23;CL:0000337!7.88e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.51e-08,23;CL:0000337,8.51e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!5.19e-14!63;UBERON:0001049!2.08e-13!52;UBERON:0005068!2.08e-13!52;UBERON:0006241!2.08e-13!52;UBERON:0007135!2.08e-13!52;UBERON:0000955!6.76e-13!50;UBERON:0006238!6.76e-13!50;UBERON:0002616!2.23e-12!49;UBERON:0002346!2.82e-11!71;UBERON:0003075!2.82e-11!71;UBERON:0007284!2.82e-11!71;UBERON:0003056!5.83e-11!49;UBERON:0002020!1.58e-10!34;UBERON:0000073!3.64e-10!75;UBERON:0001016!3.64e-10!75;UBERON:0001017!4.11e-10!73;UBERON:0005743!4.11e-10!73;UBERON:0003080!7.26e-10!40;UBERON:0002780!2.57e-09!39;UBERON:0001890!2.57e-09!39;UBERON:0006240!2.57e-09!39;UBERON:0004121!5.89e-09!102;UBERON:0000924!5.89e-09!102;UBERON:0006601!5.89e-09!102;UBERON:0007811!8.63e-09!86;UBERON:0002791!2.74e-08!29;UBERON:0003528!2.74e-08!29;UBERON:0001893!2.74e-08!29;UBERON:0000153!2.82e-08!94;UBERON:0002021!7.34e-07!10;UBERON:0000411!7.34e-07!10;UBERON:0001950!7.34e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.74e-16,92;UBERON:0000073,6.50e-16,54;UBERON:0001049,2.03e-14,52;UBERON:0005068,2.03e-14,52;UBERON:0006241,2.03e-14,52;UBERON:0007135,2.03e-14,52;UBERON:0002346,9.01e-14,64;UBERON:0003075,9.01e-14,64;UBERON:0007284,9.01e-14,64;UBERON:0001017,2.93e-12,73;UBERON:0001016,5.99e-12,75;UBERON:0010371,7.45e-12,73;UBERON:0000955,8.47e-12,47;UBERON:0006238,8.47e-12,47;UBERON:0002020,1.27e-11,34;UBERON:0003056,2.28e-11,49;UBERON:0002616,3.07e-11,46;UBERON:0004121,4.37e-11,95;UBERON:0000924,4.37e-11,95;UBERON:0006601,4.37e-11,95;UBERON:0003080,2.42e-10,40;UBERON:0002780,9.96e-10,39;UBERON:0001890,9.96e-10,39;UBERON:0006240,9.96e-10,39;UBERON:0003528,4.62e-09,29;UBERON:0002791,4.62e-09,29;UBERON:0001893,4.62e-09,29;UBERON:0002021,1.10e-07,10;UBERON:0000411,1.10e-07,10;UBERON:0001950,1.10e-07,10;UBERON:0000025,5.25e-07,114 | |||
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| |||
|short_description=p3@Dnm1l | |||
}} |
Revision as of 12:02, 13 September 2013
Short description: | p3@Dnm1l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dnm1l_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000023477, ENSMUST00000047122, ENSMUST00000096229, ENSMUST00000115749, NM_001025947, NM_152816, uc007yil.1, uc007yim.1, uc007yin.1, uc007yio.1_5end |
EntrezGene: | Dnm1l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.51e-08 | 23 |
neuroblast (sensu Vertebrata) | 8.51e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.74e-16 | 92 |
regional part of nervous system | 6.50e-16 | 54 |
neural tube | 2.03e-14 | 52 |
neural rod | 2.03e-14 | 52 |
future spinal cord | 2.03e-14 | 52 |
neural keel | 2.03e-14 | 52 |
neurectoderm | 9.01e-14 | 64 |
neural plate | 9.01e-14 | 64 |
presumptive neural plate | 9.01e-14 | 64 |
central nervous system | 2.93e-12 | 73 |
nervous system | 5.99e-12 | 75 |
ecto-epithelium | 7.45e-12 | 73 |
brain | 8.47e-12 | 47 |
future brain | 8.47e-12 | 47 |
gray matter | 1.27e-11 | 34 |
pre-chordal neural plate | 2.28e-11 | 49 |
regional part of brain | 3.07e-11 | 46 |
ectoderm-derived structure | 4.37e-11 | 95 |
ectoderm | 4.37e-11 | 95 |
presumptive ectoderm | 4.37e-11 | 95 |
anterior neural tube | 2.42e-10 | 40 |
regional part of forebrain | 9.96e-10 | 39 |
forebrain | 9.96e-10 | 39 |
future forebrain | 9.96e-10 | 39 |
brain grey matter | 4.62e-09 | 29 |
regional part of telencephalon | 4.62e-09 | 29 |
telencephalon | 4.62e-09 | 29 |
occipital lobe | 1.10e-07 | 10 |
visual cortex | 1.10e-07 | 10 |
neocortex | 1.10e-07 | 10 |
tube | 5.25e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.