FFCP PHASE1:Mm9::chr17:68353415..68353480,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=268970|HGNC=|MCL_coexpression_id=417|UniProt=Q8BN58,E9QN82|association_with_transcript=0bp_to_ENSMUST00000024840,ENSMUST00000112687,NM_172964,uc008dkj.2_5end|description=CAGE_peak_1_at_Arhgap28_5end|id=chr17:68353415..68353480,-|ontology_enrichment_celltype=CL:0000107!9.49e-07!9|ontology_enrichment_celltype_v019_2=CL:0000107,8.28e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005157!1.10e-10!27;UBERON:0005153!5.01e-07!17;UBERON:0002048!5.59e-07!14;UBERON:0000117!5.59e-07!14;UBERON:0000171!5.59e-07!14;UBERON:0000170!5.59e-07!14;UBERON:0005597!5.59e-07!14;UBERON:0000118!5.59e-07!14;UBERON:0002410!9.49e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0005157,1.06e-08,20;UBERON:0005153,4.33e-07,17;UBERON:0002048,4.85e-07,14;UBERON:0000117,4.85e-07,14;UBERON:0000171,4.85e-07,14;UBERON:0000170,4.85e-07,14;UBERON:0005597,4.85e-07,14;UBERON:0000118,4.85e-07,14;UBERON:0002410,8.28e-07,9|phase1_expression=67.582813478223,0.697950815278722,0.454999239389536,0.30246421130683,0,0,0,0,0.140788722151667,0,0,0,0,0,0.999329285446988,0.404950534779652,0.699561878128147,0.788655413395594,0.274228867211478,0,3.91199134694921,0.595745707205312,0,0.159992422793407,0.68822784320151,0.57423196411502,0,0.215471232685889,0,0,0,3.81018404075779,4.92051830067656,0,0.288851619751275,0,0.204169356262369,0,0,0.523523743973798,0,0,0.485510353031154,6.04304726282771,6.18399280439039,12.664725899156,3.9119567217402,0,0.219686182734472,0.388859798148567,1.95980990275508,1.43752564364972,0,0,0.336093799142464,2.31533492432352,3.43840127926508,2.57836046138721,2.63011399117477,3.70293685490423,5.07065122804943,7.79342423759004,6.22506357277798,1.3498495759221,0.988866362566974,0.7104801149461,1.49800055259202,1.53687322128622,3.42175720617976,2.56511282830212,2.52389953621658,0.856952953211411,2.20868540951614,1.95985278743926,1.62937300731002,2.75765635983006,1.10115880999389,0.255374676170375,0.153606533256243,2.63772575460388,3.11057988248193,3.64639359389732,0,1.12552522006336,1.37518422999129,2.06240009831567,2.27794689278565,5.77838282058432,3.71058347332602,2.11600368298999,17.102004833399,0.860423876981386,0,0,0.649776417447669,0,1.82577746171277,11.0779709675738,6.23486411046885,9.89350808628953,6.61964072950398,41.0644727725817,68.7974147207943,63.9960032837998,0.865964164044856,1.01343946190039,1.01104889002957,1.37020655662872,8.80388804400384,16.3286352971307,29.319020223477,26.4884966131563,22.1390877365816,22.4576734423408,26.5750478126693,9.55066094105534,26.6970565153124,4.62717942143717,0,14.3972496453194,3.5334642953663,1.93950101254089,0,0.585561594023094,0.628340120440365,1.78819938646014,3.83408398418945,3.59941638596045,3.93917703926501,1.19832511523858,0.915001205637253,1.13088916901578,0.521472960576829,0.511430914660661,0.20778804455956,0.973447578406546,37.5787252607667,5.72272064806428,2.77995034277042,6.10281382070775,23.6819206192121,17.9323641458109,19.4467100189777,16.2761203262572,12.858898339601,14.7330778327577,15.3670828277955,7.50239775143145,33.4130389045905,44.0617166791019,36.5978338261014,26.0842921588814,22.5218271872734,20.5468778248078,16.4625709126355,32.6416197582329,2.1066395619397,2.83082697826187,2.84163499395593,22.5767092063697,24.390710238034,16.0255234700303,19.176323582402,16.1346670032871,13.7297730469767,12.7893669612724,11.267482858784,8.4071046504362,12.1774288935976,10.9992200932994,5.43161023957233,6.87139940899062,6.36695334344047,7.1129401942997,1.05144974282064,6.89460902941206,0.660837565967596,0.264450566663544,54.1752156359494,39.2479975444141,19.0723842756698,19.3616183638409,13.5650606745371,8.75037880117772,4.2707615539006,6.25856027951241,13.069430857614,6.96347652144028,9.16331209459865,6.29173586057955,2.59365659849633,1.7922714592893,14.7940962743404,22.2784599588971,27.0498565615393,16.6994088833158,19.2012962295949,17.7443624322506,14.0385112415851,3.69025369949005,5.80895293013087,3.08492909804501,0.592905254174298,6.17326891149548,5.70021085828289,3.14806957338795,2.23146133527353,0.964708639009667,1.78238096246994,3.16465751195892,1.94562272130042,1.09824565275233,4.31304619582064,2.60498663367952,1.87222603868736,1.01031551178845,0.896987067609561,0.964887042726734,12.1937105509959,52.6786124721948,50.68210767347,52.7907216760835,40.3667227056224,34.0037702606886,22.3761022432853,26.7333097565184,42.4038537645654,46.286120136594,38.1096897091394,16.2224681568581,17.7865531321872,14.6095549167327,0,0,20.1623351937805,9.65778612066564,0.80275294993896,1.17211686592203,7.54100748732707,4.54447668967871,41.0160685241134,39.8247519182571,26.7125013188671,40.3857268539813,38.7669692903366,41.3291734951695,55.4590661294605,50.560263418657,35.9711877931336,1.28528526568723,27.8202567008207,27.7782341720918,39.0928702448583,18.9715641418416,14.6019652173959,18.6941089839336,11.4882951646605,18.6719028958339,14.4697927511579,23.9799415396263,19.1236936944484,19.2672876623078,26.7373033788541,13.9056173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| ||
|EntrezGene=268970 | |||
|HGNC= | |||
|MCL_coexpression_id=417 | |||
|UniProt=Q8BN58,E9QN82 | |||
|association_with_transcript=0bp_to_ENSMUST00000024840,ENSMUST00000112687,NM_172964,uc008dkj.2_5end | |||
|description=CAGE_peak_1_at_Arhgap28_5end | |||
|id=chr17:68353415..68353480,- | |||
|ontology_enrichment_celltype=CL:0000107!9.49e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,8.28e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005157!1.10e-10!27;UBERON:0005153!5.01e-07!17;UBERON:0002048!5.59e-07!14;UBERON:0000117!5.59e-07!14;UBERON:0000171!5.59e-07!14;UBERON:0000170!5.59e-07!14;UBERON:0005597!5.59e-07!14;UBERON:0000118!5.59e-07!14;UBERON:0002410!9.49e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005157,1.06e-08,20;UBERON:0005153,4.33e-07,17;UBERON:0002048,4.85e-07,14;UBERON:0000117,4.85e-07,14;UBERON:0000171,4.85e-07,14;UBERON:0000170,4.85e-07,14;UBERON:0005597,4.85e-07,14;UBERON:0000118,4.85e-07,14;UBERON:0002410,8.28e-07,9 | |||
|phase1_expression=67.582813478223,0.697950815278722,0.454999239389536,0.30246421130683,0,0,0,0,0.140788722151667,0,0,0,0,0,0.999329285446988,0.404950534779652,0.699561878128147,0.788655413395594,0.274228867211478,0,3.91199134694921,0.595745707205312,0,0.159992422793407,0.68822784320151,0.57423196411502,0,0.215471232685889,0,0,0,3.81018404075779,4.92051830067656,0,0.288851619751275,0,0.204169356262369,0,0,0.523523743973798,0,0,0.485510353031154,6.04304726282771,6.18399280439039,12.664725899156,3.9119567217402,0,0.219686182734472,0.388859798148567,1.95980990275508,1.43752564364972,0,0,0.336093799142464,2.31533492432352,3.43840127926508,2.57836046138721,2.63011399117477,3.70293685490423,5.07065122804943,7.79342423759004,6.22506357277798,1.3498495759221,0.988866362566974,0.7104801149461,1.49800055259202,1.53687322128622,3.42175720617976,2.56511282830212,2.52389953621658,0.856952953211411,2.20868540951614,1.95985278743926,1.62937300731002,2.75765635983006,1.10115880999389,0.255374676170375,0.153606533256243,2.63772575460388,3.11057988248193,3.64639359389732,0,1.12552522006336,1.37518422999129,2.06240009831567,2.27794689278565,5.77838282058432,3.71058347332602,2.11600368298999,17.102004833399,0.860423876981386,0,0,0.649776417447669,0,1.82577746171277,11.0779709675738,6.23486411046885,9.89350808628953,6.61964072950398,41.0644727725817,68.7974147207943,63.9960032837998,0.865964164044856,1.01343946190039,1.01104889002957,1.37020655662872,8.80388804400384,16.3286352971307,29.319020223477,26.4884966131563,22.1390877365816,22.4576734423408,26.5750478126693,9.55066094105534,26.6970565153124,4.62717942143717,0,14.3972496453194,3.5334642953663,1.93950101254089,0,0.585561594023094,0.628340120440365,1.78819938646014,3.83408398418945,3.59941638596045,3.93917703926501,1.19832511523858,0.915001205637253,1.13088916901578,0.521472960576829,0.511430914660661,0.20778804455956,0.973447578406546,37.5787252607667,5.72272064806428,2.77995034277042,6.10281382070775,23.6819206192121,17.9323641458109,19.4467100189777,16.2761203262572,12.858898339601,14.7330778327577,15.3670828277955,7.50239775143145,33.4130389045905,44.0617166791019,36.5978338261014,26.0842921588814,22.5218271872734,20.5468778248078,16.4625709126355,32.6416197582329,2.1066395619397,2.83082697826187,2.84163499395593,22.5767092063697,24.390710238034,16.0255234700303,19.176323582402,16.1346670032871,13.7297730469767,12.7893669612724,11.267482858784,8.4071046504362,12.1774288935976,10.9992200932994,5.43161023957233,6.87139940899062,6.36695334344047,7.1129401942997,1.05144974282064,6.89460902941206,0.660837565967596,0.264450566663544,54.1752156359494,39.2479975444141,19.0723842756698,19.3616183638409,13.5650606745371,8.75037880117772,4.2707615539006,6.25856027951241,13.069430857614,6.96347652144028,9.16331209459865,6.29173586057955,2.59365659849633,1.7922714592893,14.7940962743404,22.2784599588971,27.0498565615393,16.6994088833158,19.2012962295949,17.7443624322506,14.0385112415851,3.69025369949005,5.80895293013087,3.08492909804501,0.592905254174298,6.17326891149548,5.70021085828289,3.14806957338795,2.23146133527353,0.964708639009667,1.78238096246994,3.16465751195892,1.94562272130042,1.09824565275233,4.31304619582064,2.60498663367952,1.87222603868736,1.01031551178845,0.896987067609561,0.964887042726734,12.1937105509959,52.6786124721948,50.68210767347,52.7907216760835,40.3667227056224,34.0037702606886,22.3761022432853,26.7333097565184,42.4038537645654,46.286120136594,38.1096897091394,16.2224681568581,17.7865531321872,14.6095549167327,0,0,20.1623351937805,9.65778612066564,0.80275294993896,1.17211686592203,7.54100748732707,4.54447668967871,41.0160685241134,39.8247519182571,26.7125013188671,40.3857268539813,38.7669692903366,41.3291734951695,55.4590661294605,50.560263418657,35.9711877931336,1.28528526568723,27.8202567008207,27.7782341720918,39.0928702448583,18.9715641418416,14.6019652173959,18.6941089839336,11.4882951646605,18.6719028958339,14.4697927511579,23.9799415396263,19.1236936944484,19.2672876623078,26.7373033788541,13.9056173491759,15.8127912862498,10.3135543248187,3.06395645178409,24.6683698822895,10.4780533864031,12.4315480318324,9.3990323830405,11.2372355089304,13.1639216481697,8.22055362609418,21.5897971418614,25.6316805745222,14.3343458735725,2.14352128823924,16.1464426695906,8.68506118965444,6.2073618881631,5.58079059133208,5.82961673259701,1.11255181206306,1.53783792718067,20.6386867963223,12.7784223885101,2.26042148405629,1.77702496037333,1.60144721244566,7.30907248973578,5.03825228365169,8.01559848065658,0.954670618015114,44.6033750949401,24.6016555223487,22.6811215725783,17.7725051612298,14.6302917709939,11.4634694427098,16.0347704107152,4.4498510137285,3.88844919875379,1.24267862617385,0,15.9982704267057,16.2149320647956,17.3061557626202,12.5285028773399,13.8544022902438,20.3028022857154,10.1559420178281,4.40409246587986,2.65742532908607,1.72818003754719,1.26404448251271,14.1907650703115,8.11416561602135,2.46849563657811,1.43221356533985,3.17890167650024,0.7211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| |||
|short_description=p1@Arhgap28 | |||
}} | |||
Revision as of 15:10, 13 September 2013
| Short description: | p1@Arhgap28 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Arhgap28_5end |
| Coexpression cluster: | MCL_coexpression_mm9:417 |
| Association with transcript: | 0bp_to_ENSMUST00000024840, ENSMUST00000112687, NM_172964, uc008dkj.2_5end |
| EntrezGene: | Arhgap28 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| autonomic neuron | 8.28e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| epithelial fold | 1.06e-08 | 20 |
| epithelial bud | 4.33e-07 | 17 |
| lung | 4.85e-07 | 14 |
| respiratory tube | 4.85e-07 | 14 |
| respiration organ | 4.85e-07 | 14 |
| pair of lungs | 4.85e-07 | 14 |
| lung primordium | 4.85e-07 | 14 |
| lung bud | 4.85e-07 | 14 |
| autonomic nervous system | 8.28e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
