FFCP PHASE1:Hg19::chr6:108145499..108145532,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=256380|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21397|TSSclassifier=S|UniProt=Q8N228|association_with_transcript=0bp_to_ENST00000369020,ENST00000369022,ENST00000473515,NM_198081,uc003prz.3,uc010kdf.2,uc011eam.1_5end|coexpression_cluster_id=C18|description=CAGE_peak_1_at_SCML4_5end|id=chr6:108145499..108145532,-|ontology_enrichment_celltype=CL:0000738!4.96e-40!140;CL:0002087!1.12e-33!119;CL:0000037!6.02e-33!172;CL:0000566!6.02e-33!172;CL:0000988!4.13e-29!182;CL:0002032!1.49e-28!165;CL:0000837!1.49e-28!165;CL:0002031!6.47e-28!124;CL:0000542!9.72e-24!53;CL:0000051!9.72e-24!53;CL:0000838!4.40e-23!52;CL:0000791!4.34e-19!18;CL:0000789!4.34e-19!18;CL:0002420!4.34e-19!18;CL:0002419!4.34e-19!18;CL:0000790!4.34e-19!18;CL:0000766!9.53e-14!76;CL:0002057!2.66e-13!42;CL:0000625!1.22e-12!11;CL:0000236!1.25e-12!14;CL:0000860!1.04e-11!45;CL:0000084!1.35e-11!25;CL:0000827!1.35e-11!25;CL:0000945!5.34e-10!24;CL:0000826!5.34e-10!24;CL:0002194!1.03e-09!63;CL:0000576!1.03e-09!63;CL:0000040!1.03e-09!63;CL:0000559!1.03e-09!63;CL:0000763!3.24e-09!112;CL:0000049!3.24e-09!112;CL:0000557!3.51e-09!71;CL:0002009!4.46e-09!65;CL:0000839!1.00e-08!70;CL:0000094!4.19e-08!8;CL:0000624!2.55e-07!6|ontology_enrichment_celltype_v019=CL:0000791;1.64e-29;18!CL:0000789;1.64e-29;18!CL:0002419;1.64e-29;18!CL:0000084;1.69e-19;25!CL:0000625;3.24e-19;11!CL:0000542;6.02e-18;53!CL:0000236;4.46e-16;13!CL:0000094;5.62e-12;8!CL:0002087;7.59e-11;104!CL:0000624;9.78e-11;6!CL:0000945;2.01e-08;24!CL:0000081;3.09e-08;11|ontology_enrichment_celltype_v019_2=CL:0000542,9.05e-31,53;CL:0000051,9.05e-31,53;CL:0000838,9.15e-30,52;CL:0000791,1.71e-29,18;CL:0000789,1.71e-29,18;CL:0002420,1.71e-29,18;CL:0002419,1.71e-29,18;CL:0000790,1.71e-29,18;CL:0000738,2.76e-29,136;CL:0002087,2.22e-24,115;CL:0000037,7.32e-24,168;CL:0000988,1.17e-21,177;CL:0002032,1.22e-19,161;CL:0000837,1.22e-19,161;CL:0000084,1.74e-19,25;CL:0000827,1.74e-19,25;CL:0000625,3.36e-19,11;CL:0002031,3.58e-18,120;CL:0000236,5.03e-17,14;CL:0000094,5.59e-12,8;CL:0000624,9.80e-11,6;CL:0000945,1.90e-08,24;CL:0000826,1.90e-08,24;CL:0000081,3.08e-08,11|ontology_enrichment_development_v019=CL:0000790;1.64e-29;18!CL:0000051;6.02e-18;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.43e-21!115;UBERON:0002390!4.27e-16!102;UBERON:0003061!4.27e-16!102;UBERON:0002193!1.23e-14!112;UBERON:0000178!5.59e-09!15;UBERON:0000179!5.59e-09!15;UBERON:0000463!5.59e-09!15;UBERON:0002371!1.61e-07!80;UBERON:0002405!7.89e-07!115|ontology_enrichment_uberon_v019=UBERON:0000178;2.83e-14;15!UBERON:0000179;2.83e-14;15!UBERON:0000463;2.83e-14;15!UBERON:0002390;2.24e-11;32!UBERON:0002193;1.51e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.77e-14,15;UBERON:0000179,2.77e-14,15;UBERON:0000463,2.77e-14,15;UBERON:0002390,3.82e-09,98;UBERON:0003061,3.82e-09,98;UBERON:0002193,6.13e-09,108;UBERON:0004177,2.91e-08,7;UBERON:0005057,2.91e-08,7;UBERON:0002370,2.52e-07,4;UBERON:0005058,2.52e-07,4;UBERON:0009113,2.52e-07,4;UBERON:0003295,2.52e-07,4;UBERON:0005562,2.52e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764134057479513,0.328402357799783,0.865818594450472,13.7677496897116,47.5948453640544,10.3726802621771,0,0,0,0,0,2.93600439334847,8.86392653651004,12.2332112956786,15.1907609501096,1.56740831967947,6.47787332037959,1.54545340580512,0.436194716338694,0.377875943688809,0.242584061187816,0.464858073811369,0,0.619412741790207,0,1.0246428261164,0.47296445977717,0.344745680736619,2.5819387343353,0,0.188242339542605,0,0.674170453335254,1.83650335422542,0.641858054152187,1.91801137739712,0.989553900560148,0,0,0.870627715885752,0.56738522469114,3.11411124497787,0.502497330513487,0.521482918420201,0.65156653411535,3.63239701580021,1.47311054395026,1.89877432464531,0.211255286311942,0,0.628975936525128,0.112328631146495,0.300353785683013,0.16072558669708,0.855038231223746,0.79566670879636,1.27864907635244,8.79981222306614,16.3841583378639,16.9006758234075,20.4830506831923,12.4122755981164,18.9668305184979,14.542987201267,11.4486450544244,22.1993057952685,14.6809297342735,17.9668417218858,7.93027971474155,10.6496626966492,2.63384084775077,58.4228017238084,34.9779578846757,43.3819162888964,2.17342444007882,23.1404809309849,28.8803161498187,31.1722765452658,5.01347055983281,9.13278313171995,10.1905591508466,9.20733136801053,1.5370958367081,1.30059347559878,17.5948557925933,10.7776506936481,22.025034515864,79.0367381653782,80.7973300830934,70.0388009493344,4.87230173599535,47.9025617002402,41.9225483488809,63.5079426968952,42.687765519429,50.7845094008006,41.8198899557285,43.3656342943986,48.1229657940613,52.4709051519853,42.146350863835,36.9507598614471,59.6755959945208,52.4182783735674,41.7094283182461,0,0,0,0,0,0,0,0,0,0,0.351339142772504,1.0478326039817,0,0,0,0.522389211897802,0.132957960518865,0.715471872916026,0.571994910780128,1.11437250398869,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=256380 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21397 | |||
|TSSclassifier=S | |||
|UniProt=Q8N228 | |||
|association_with_transcript=0bp_to_ENST00000369020,ENST00000369022,ENST00000473515,NM_198081,uc003prz.3,uc010kdf.2,uc011eam.1_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_SCML4_5end | |||
|id=chr6:108145499..108145532,- | |||
|ontology_enrichment_celltype=CL:0000738!4.96e-40!140;CL:0002087!1.12e-33!119;CL:0000037!6.02e-33!172;CL:0000566!6.02e-33!172;CL:0000988!4.13e-29!182;CL:0002032!1.49e-28!165;CL:0000837!1.49e-28!165;CL:0002031!6.47e-28!124;CL:0000542!9.72e-24!53;CL:0000051!9.72e-24!53;CL:0000838!4.40e-23!52;CL:0000791!4.34e-19!18;CL:0000789!4.34e-19!18;CL:0002420!4.34e-19!18;CL:0002419!4.34e-19!18;CL:0000790!4.34e-19!18;CL:0000766!9.53e-14!76;CL:0002057!2.66e-13!42;CL:0000625!1.22e-12!11;CL:0000236!1.25e-12!14;CL:0000860!1.04e-11!45;CL:0000084!1.35e-11!25;CL:0000827!1.35e-11!25;CL:0000945!5.34e-10!24;CL:0000826!5.34e-10!24;CL:0002194!1.03e-09!63;CL:0000576!1.03e-09!63;CL:0000040!1.03e-09!63;CL:0000559!1.03e-09!63;CL:0000763!3.24e-09!112;CL:0000049!3.24e-09!112;CL:0000557!3.51e-09!71;CL:0002009!4.46e-09!65;CL:0000839!1.00e-08!70;CL:0000094!4.19e-08!8;CL:0000624!2.55e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.64e-29;18!CL:0000789;1.64e-29;18!CL:0002419;1.64e-29;18!CL:0000084;1.69e-19;25!CL:0000625;3.24e-19;11!CL:0000542;6.02e-18;53!CL:0000236;4.46e-16;13!CL:0000094;5.62e-12;8!CL:0002087;7.59e-11;104!CL:0000624;9.78e-11;6!CL:0000945;2.01e-08;24!CL:0000081;3.09e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.05e-31,53;CL:0000051,9.05e-31,53;CL:0000838,9.15e-30,52;CL:0000791,1.71e-29,18;CL:0000789,1.71e-29,18;CL:0002420,1.71e-29,18;CL:0002419,1.71e-29,18;CL:0000790,1.71e-29,18;CL:0000738,2.76e-29,136;CL:0002087,2.22e-24,115;CL:0000037,7.32e-24,168;CL:0000988,1.17e-21,177;CL:0002032,1.22e-19,161;CL:0000837,1.22e-19,161;CL:0000084,1.74e-19,25;CL:0000827,1.74e-19,25;CL:0000625,3.36e-19,11;CL:0002031,3.58e-18,120;CL:0000236,5.03e-17,14;CL:0000094,5.59e-12,8;CL:0000624,9.80e-11,6;CL:0000945,1.90e-08,24;CL:0000826,1.90e-08,24;CL:0000081,3.08e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.64e-29;18!CL:0000051;6.02e-18;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.43e-21!115;UBERON:0002390!4.27e-16!102;UBERON:0003061!4.27e-16!102;UBERON:0002193!1.23e-14!112;UBERON:0000178!5.59e-09!15;UBERON:0000179!5.59e-09!15;UBERON:0000463!5.59e-09!15;UBERON:0002371!1.61e-07!80;UBERON:0002405!7.89e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.83e-14;15!UBERON:0000179;2.83e-14;15!UBERON:0000463;2.83e-14;15!UBERON:0002390;2.24e-11;32!UBERON:0002193;1.51e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.77e-14,15;UBERON:0000179,2.77e-14,15;UBERON:0000463,2.77e-14,15;UBERON:0002390,3.82e-09,98;UBERON:0003061,3.82e-09,98;UBERON:0002193,6.13e-09,108;UBERON:0004177,2.91e-08,7;UBERON:0005057,2.91e-08,7;UBERON:0002370,2.52e-07,4;UBERON:0005058,2.52e-07,4;UBERON:0009113,2.52e-07,4;UBERON:0003295,2.52e-07,4;UBERON:0005562,2.52e-07,4 | |||
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| |||
|short_description=p1@SCML4 | |||
}} |
Revision as of 17:16, 13 September 2013
Short description: | p1@SCML4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SCML4_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000369020, ENST00000369022, ENST00000473515, NM_198081, uc003prz.3, uc010kdf.2, uc011eam.1_5end |
EntrezGene: | SCML4 |
HGNC: | 21397 |
UniProt: | Q8N228 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.05e-31 | 53 |
common lymphoid progenitor | 9.05e-31 | 53 |
lymphoid lineage restricted progenitor cell | 9.15e-30 | 52 |
mature alpha-beta T cell | 1.71e-29 | 18 |
alpha-beta T cell | 1.71e-29 | 18 |
immature T cell | 1.71e-29 | 18 |
mature T cell | 1.71e-29 | 18 |
immature alpha-beta T cell | 1.71e-29 | 18 |
leukocyte | 2.76e-29 | 136 |
nongranular leukocyte | 2.22e-24 | 115 |
hematopoietic stem cell | 7.32e-24 | 168 |
hematopoietic cell | 1.17e-21 | 177 |
hematopoietic oligopotent progenitor cell | 1.22e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.22e-19 | 161 |
T cell | 1.74e-19 | 25 |
pro-T cell | 1.74e-19 | 25 |
CD8-positive, alpha-beta T cell | 3.36e-19 | 11 |
hematopoietic lineage restricted progenitor cell | 3.58e-18 | 120 |
B cell | 5.03e-17 | 14 |
granulocyte | 5.59e-12 | 8 |
CD4-positive, alpha-beta T cell | 9.80e-11 | 6 |
lymphocyte of B lineage | 1.90e-08 | 24 |
pro-B cell | 1.90e-08 | 24 |
blood cell | 3.08e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
blood | 2.77e-14 | 15 |
haemolymphatic fluid | 2.77e-14 | 15 |
organism substance | 2.77e-14 | 15 |
hematopoietic system | 3.82e-09 | 98 |
blood island | 3.82e-09 | 98 |
hemolymphoid system | 6.13e-09 | 108 |
hemopoietic organ | 2.91e-08 | 7 |
immune organ | 2.91e-08 | 7 |
thymus | 2.52e-07 | 4 |
hemolymphoid system gland | 2.52e-07 | 4 |
thymic region | 2.52e-07 | 4 |
pharyngeal gland | 2.52e-07 | 4 |
thymus primordium | 2.52e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.