FFCP PHASE1:Mm9::chr19:28085628..28085671,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19726|HGNC=|UniProt=P48381|association_with_transcript=0bp_to_ENSMUST00000112613,ENSMUST00000173161,ENSMUST00000174850,NM_011265,uc008hcb.2,uc008hcc.2,uc008hcd.2,uc008hce.2_5end|description=CAGE_peak_1_at_Rfx3_5end|id=chr19:28085628..28085671,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!2.17e-16!94;UBERON:0003056!6.54e-15!49;UBERON:0007811!8.94e-14!86;UBERON:0000033!3.09e-13!63;UBERON:0003080!1.29e-12!40;UBERON:0002780!1.96e-12!39;UBERON:0001890!1.96e-12!39;UBERON:0006240!1.96e-12!39;UBERON:0000955!2.01e-12!50;UBERON:0006238!2.01e-12!50;UBERON:0002616!7.55e-12!49;UBERON:0001017!6.18e-11!73;UBERON:0005743!6.18e-11!73;UBERON:0001049!6.32e-11!52;UBERON:0005068!6.32e-11!52;UBERON:0006241!6.32e-11!52;UBERON:0007135!6.32e-11!52;UBERON:0002346!2.94e-10!71;UBERON:0003075!2.94e-10!71;UBERON:0007284!2.94e-10!71;UBERON:0002791!5.34e-10!29;UBERON:0003528!5.34e-10!29;UBERON:0001893!5.34e-10!29;UBERON:0000073!7.06e-10!75;UBERON:0001016!7.06e-10!75;UBERON:0002020!4.80e-09!34;UBERON:0000956!1.16e-08!21;UBERON:0001869!1.16e-08!21;UBERON:0000203!1.16e-08!21;UBERON:0002021!7.49e-08!10;UBERON:0000411!7.49e-08!10;UBERON:0001950!7.49e-08!10;UBERON:0002619!1.28e-07!17;UBERON:0004121!2.30e-07!102;UBERON:0000924!2.30e-07!102;UBERON:0006601!2.30e-07!102|ontology_enrichment_uberon_v019_2=UBERON:0003056,7.38e-15,49;UBERON:0002346,1.96e-13,64;UBERON:0003075,1.96e-13,64;UBERON:0007284,1.96e-13,64;UBERON:0003080,1.45e-12,40;UBERON:0002780,2.21e-12,39;UBERON:0001890,2.21e-12,39;UBERON:0006240,2.21e-12,39;UBERON:0000955,3.40e-12,47;UBERON:0006238,3.40e-12,47;UBERON:0002616,1.29e-11,46;UBERON:0010371,3.05e-11,73;UBERON:0000073,3.96e-11,54;UBERON:0001017,7.35e-11,73;UBERON:0001049,7.52e-11,52;UBERON:0005068,7.52e-11,52;UBERON:0006241,7.52e-11,52;UBERON:0007135,7.52e-11,52;UBERON:0003528,6.06e-10,29;UBERON:0002791,6.06e-10,29;UBERON:0001893,6.06e-10,29;UBERON:0001016,8.30e-10,75;UBERON:0004121,2.39e-09,95;UBERON:0000924,2.39e-09,95;UBERON:0006601,2.39e-09,95;UBERON:0002020,5.36e-09,34;UBERON:0000956,1.33e-08,21;UBERON:0001869,1.33e-08,21;UBERON:0000203,1.33e-08,21;UBERON:0002021,7.45e-08,10;UBERON:0000411,7.45e-08,10;UBERON:0001950,7.45e-08,10;UBERON:0002619,1.47e-07,17|phase1_expression=4.64431656603902,0.348975407639361,0.454999239389536,2.11724947914781,0.500895729946347,1.17515490338323,3.97141489012394,7.48915275961142,3.09735188733667,2.57470978954193,2.05461561870606,0.797721589953364,13.6960583944965,12.8507991555926,1.99865857089398,4.656931149966,4.89693314689703,8.83294063003066,7.40417941470989,6.79023442876848,6.97354979238772,7.4468213400664,4.17919662622297,0.95995453676044,0.68822784320151,0,0,1.07735616342945,1.71021077510736,1.76421090831952,1.10865255327652,8.25539875497521,7.99584223859941,0,9.24325183204079,4.82080471539628,6.73758875665818,2.51118978442145,2.3440060335714,4.71171369576418,5.29408339227913,4.78131839470912,2.42755176515577,2.64383317748712,2.93993100536592,2.20256102594018,0.782391344348039,1.52617609466313,0.878744730937887,1.55543919259427,0.699932108126813,1.43752564364972,4.69791296961662,8.70434570413613,8.73843877770406,1.28629718017973,1.71920063963254,3.6097046459421,11.5320382689971,14.8117474196169,6.33831403506179,0.677689064138264,0,0,0,0,0.299600110518405,1.15265491596466,13.7907184370275,9.45041568321835,8.83364837675805,2.28520787523043,3.09215957332259,16.2912762955889,15.4311208339361,12.8690630125403,6.60695285996332,6.51205424234457,12.4421291937557,11.6059933202571,11.0700048758916,12.5019208933622,3.62937898701795,7.87867654044352,7.94550888439413,12.0797720044204,12.386336229522,5.59198337475902,2.34751199332871,1.51143120213571,6.08715426273523,0.860423876981386,0.679971333707751,2.15881276655127,3.24888208723835,1.34408066129201,3.23022166303029,0.681721290312231,0.519572009205738,0.70667914902068,7.32385782838739,0,2.54805239706646,0,0.649473123033642,1.77351905832569,2.02209778005913,3.88225191044804,38.0638688961342,3.56261133755579,3.81667718885499,2.43572382649713,2.53677046981664,2.86373017049983,3.17489509266403,1.38233250462643,1.73036477414062,2.4581890676385,1.76922110389975,4.36770494858005,2.87093973998512,5.33362778448744,7.45567044872489,19.3235326027621,18.0124167859571,2.81002760729451,5.51149572727233,3.59941638596045,3.93917703926501,10.3355541189328,23.33253074375,27.769611816943,18.4253779403813,17.1329356411321,11.4283424507758,12.3303359931496,3.66621709861139,4.60305791257344,1.76905930903572,4.8401626853889,17.3060189140396,8.27647575960503,14.4049703844279,11.9056806090215,9.93332887609387,19.2170580427275,13.8678552348399,9.05461797586555,10.1316956678436,18.7215019366141,14.6039433056078,7.89104636739269,15.5706459566335,9.05455632957633,8.0255033199098,7.56330213910274,4.91549231119264,1.54408744268829,3.40996199274711,6.21377317606506,9.14651633926275,5.76198596675248,8.52281048106757,7.67380503814875,5.399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| ||
|EntrezGene=19726 | |||
|HGNC= | |||
|UniProt=P48381 | |||
|association_with_transcript=0bp_to_ENSMUST00000112613,ENSMUST00000173161,ENSMUST00000174850,NM_011265,uc008hcb.2,uc008hcc.2,uc008hcd.2,uc008hce.2_5end | |||
|description=CAGE_peak_1_at_Rfx3_5end | |||
|id=chr19:28085628..28085671,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!2.17e-16!94;UBERON:0003056!6.54e-15!49;UBERON:0007811!8.94e-14!86;UBERON:0000033!3.09e-13!63;UBERON:0003080!1.29e-12!40;UBERON:0002780!1.96e-12!39;UBERON:0001890!1.96e-12!39;UBERON:0006240!1.96e-12!39;UBERON:0000955!2.01e-12!50;UBERON:0006238!2.01e-12!50;UBERON:0002616!7.55e-12!49;UBERON:0001017!6.18e-11!73;UBERON:0005743!6.18e-11!73;UBERON:0001049!6.32e-11!52;UBERON:0005068!6.32e-11!52;UBERON:0006241!6.32e-11!52;UBERON:0007135!6.32e-11!52;UBERON:0002346!2.94e-10!71;UBERON:0003075!2.94e-10!71;UBERON:0007284!2.94e-10!71;UBERON:0002791!5.34e-10!29;UBERON:0003528!5.34e-10!29;UBERON:0001893!5.34e-10!29;UBERON:0000073!7.06e-10!75;UBERON:0001016!7.06e-10!75;UBERON:0002020!4.80e-09!34;UBERON:0000956!1.16e-08!21;UBERON:0001869!1.16e-08!21;UBERON:0000203!1.16e-08!21;UBERON:0002021!7.49e-08!10;UBERON:0000411!7.49e-08!10;UBERON:0001950!7.49e-08!10;UBERON:0002619!1.28e-07!17;UBERON:0004121!2.30e-07!102;UBERON:0000924!2.30e-07!102;UBERON:0006601!2.30e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,7.38e-15,49;UBERON:0002346,1.96e-13,64;UBERON:0003075,1.96e-13,64;UBERON:0007284,1.96e-13,64;UBERON:0003080,1.45e-12,40;UBERON:0002780,2.21e-12,39;UBERON:0001890,2.21e-12,39;UBERON:0006240,2.21e-12,39;UBERON:0000955,3.40e-12,47;UBERON:0006238,3.40e-12,47;UBERON:0002616,1.29e-11,46;UBERON:0010371,3.05e-11,73;UBERON:0000073,3.96e-11,54;UBERON:0001017,7.35e-11,73;UBERON:0001049,7.52e-11,52;UBERON:0005068,7.52e-11,52;UBERON:0006241,7.52e-11,52;UBERON:0007135,7.52e-11,52;UBERON:0003528,6.06e-10,29;UBERON:0002791,6.06e-10,29;UBERON:0001893,6.06e-10,29;UBERON:0001016,8.30e-10,75;UBERON:0004121,2.39e-09,95;UBERON:0000924,2.39e-09,95;UBERON:0006601,2.39e-09,95;UBERON:0002020,5.36e-09,34;UBERON:0000956,1.33e-08,21;UBERON:0001869,1.33e-08,21;UBERON:0000203,1.33e-08,21;UBERON:0002021,7.45e-08,10;UBERON:0000411,7.45e-08,10;UBERON:0001950,7.45e-08,10;UBERON:0002619,1.47e-07,17 | |||
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| |||
|short_description=p1@Rfx3 | |||
}} |
Revision as of 17:18, 13 September 2013
Short description: | p1@Rfx3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rfx3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000112613, ENSMUST00000173161, ENSMUST00000174850, NM_011265, uc008hcb.2, uc008hcc.2, uc008hcd.2, uc008hce.2_5end |
EntrezGene: | Rfx3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 7.38e-15 | 49 |
neurectoderm | 1.96e-13 | 64 |
neural plate | 1.96e-13 | 64 |
presumptive neural plate | 1.96e-13 | 64 |
anterior neural tube | 1.45e-12 | 40 |
regional part of forebrain | 2.21e-12 | 39 |
forebrain | 2.21e-12 | 39 |
future forebrain | 2.21e-12 | 39 |
brain | 3.40e-12 | 47 |
future brain | 3.40e-12 | 47 |
regional part of brain | 1.29e-11 | 46 |
ecto-epithelium | 3.05e-11 | 73 |
regional part of nervous system | 3.96e-11 | 54 |
central nervous system | 7.35e-11 | 73 |
neural tube | 7.52e-11 | 52 |
neural rod | 7.52e-11 | 52 |
future spinal cord | 7.52e-11 | 52 |
neural keel | 7.52e-11 | 52 |
brain grey matter | 6.06e-10 | 29 |
regional part of telencephalon | 6.06e-10 | 29 |
telencephalon | 6.06e-10 | 29 |
nervous system | 8.30e-10 | 75 |
ectoderm-derived structure | 2.39e-09 | 95 |
ectoderm | 2.39e-09 | 95 |
presumptive ectoderm | 2.39e-09 | 95 |
gray matter | 5.36e-09 | 34 |
cerebral cortex | 1.33e-08 | 21 |
cerebral hemisphere | 1.33e-08 | 21 |
pallium | 1.33e-08 | 21 |
occipital lobe | 7.45e-08 | 10 |
visual cortex | 7.45e-08 | 10 |
neocortex | 7.45e-08 | 10 |
regional part of cerebral cortex | 1.47e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.