FFCP PHASE1:Mm9::chr1:195027629..195027778,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=215243|HGNC=|MCL_coexpression_id=36|UniProt=G3X949,B2RPU5,Q8C0G2|association_with_transcript=0bp_to_ENSMUST00000043550,ENSMUST00000159805,ENSMUST00000161145,ENSMUST00000161151,ENSMUST00000161403,NM_153137,uc007eec.2_5end|description=CAGE_peak_1_at_Traf3ip3_5end|id=chr1:195027629..195027778,-|ontology_enrichment_celltype=CL:0000988!2.88e-10!32;CL:0002032!2.88e-10!32;CL:0000037!2.88e-10!32;CL:0000566!2.88e-10!32;CL:0000837!2.88e-10!32;CL:0002031!2.41e-08!25;CL:0000838!3.27e-08!12;CL:0000738!7.99e-08!17;CL:0002087!7.99e-08!17;CL:0000084!1.08e-07!11;CL:0000827!1.08e-07!11;CL:0000542!2.39e-07!13;CL:0000051!2.39e-07!13|ontology_enrichment_celltype_v019_2=CL:0000988,1.34e-12,32;CL:0002032,1.34e-12,32;CL:0000037,1.34e-12,32;CL:0000837,1.34e-12,32;CL:0002031,1.64e-10,25;CL:0000838,2.69e-09,12;CL:0000084,1.07e-08,11;CL:0000827,1.07e-08,11;CL:0000738,1.10e-08,17;CL:0002087,1.10e-08,17;CL:0000542,4.06e-08,13;CL:0000051,4.06e-08,13;CL:0000791,1.87e-07,9;CL:0000789,1.87e-07,9;CL:0002420,1.87e-07,9;CL:0002419,1.87e-07,9;CL:0000790,1.87e-07,9;CL:0002320,5.54e-07,46;CL:0000134,5.54e-07,46;CL:0000624,9.03e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!6.50e-19!48;UBERON:0002405!1.61e-17!70;UBERON:0002390!1.74e-17!45;UBERON:0003061!1.74e-17!45;UBERON:0004177!1.28e-11!29;UBERON:0005057!2.58e-10!51;UBERON:0003081!1.12e-09!88;UBERON:0003408!4.06e-09!24;UBERON:0002370!7.68e-09!23;UBERON:0000974!7.68e-09!23;UBERON:0004807!7.68e-09!23;UBERON:0005058!7.68e-09!23;UBERON:0003351!7.68e-09!23;UBERON:0009113!7.68e-09!23;UBERON:0003295!7.68e-09!23;UBERON:0009722!7.68e-09!23;UBERON:0005562!7.68e-09!23;UBERON:0007690!7.68e-09!23;UBERON:0006562!4.21e-08!24;UBERON:0001557!4.21e-08!24;UBERON:0001042!4.21e-08!24;UBERON:0008814!4.21e-08!24;UBERON:0009145!4.21e-08!24;UBERON:0001041!1.38e-07!92;UBERON:0000926!6.14e-07!193;UBERON:0004120!6.14e-07!193;UBERON:0006603!6.14e-07!193;UBERON:0000077!7.04e-07!97|ontology_enrichment_uberon_v019_2=UBERON:0002193,5.60e-23,48;UBERON:0002405,5.60e-23,48;UBERON:0002390,2.67e-21,45;UBERON:0003061,2.67e-21,45;UBERON:0004177,1.89e-14,29;UBERON:0005057,1.89e-14,29;UBERON:0003408,1.73e-11,24;UBERON:0002370,3.61e-11,23;UBERON:0000974,3.61e-11,23;UBERON:0004807,3.61e-11,23;UBERON:0005058,3.61e-11,23;UBERON:0003351,3.61e-11,23;UBERON:0009113,3.61e-11,23;UBERON:0003295,3.61e-11,23;UBERON:0009722,3.61e-11,23;UBERON:0005562,3.61e-11,23;UBERON:0007690,3.61e-11,23;UBERON:0006562,2.79e-10,24;UBERON:0001557,2.79e-10,24;UBERON:0001042,2.79e-10,24;UBERON:0008814,2.79e-10,24;UBERON:0009145,2.79e-10,24;UBERON:0003081,3.36e-10,87;UBERON:0000077,9.29e-10,35;UBERON:0001041,2.80e-08,80;UBERON:0001004,4.11e-08,42;UBERON:0000072,4.56e-08,27;UBERON:0000065,8.32e-08,41;UBERON:0001474,1.06e-07,22;UBERON:0004765,1.06e-07,22;UBERON:0001434,1.06e-07,22;UBERON:0002371,1.44e-07,16;UBERON:0002384,5.54e-07,46|phase1_expression=0.160148847104794,0,0,0,0,0,0,212.407867061393,32.09982865058,56.6436153699224,16.608142917874,26.085495991475,155.792664237397,192.499726126632,18.6541466616771,21.2599030759317,9.09430441566591,100.31696858392,109.280203583774,90.8193854847785,5.3577272795174,62.354717354156,42.5755656296465,7.51964387129011,7.34109699414944,0,0,0,1.90023419456374,2.26827116783938,1.33038306393183,0,0,0,0,0,0.204169356262369,98.3549332231733,61.7254922173802,104.181225050786,104.11697338149,98.3585498340162,110.696360491103,0,0,0,0,0,0,0,0,0,42.2812167265496,73.2615763431458,80.3264179950489,0,0.85960031981627,0,0.404632921719196,0.528990979272033,0,0,0,1.7997994345628,4.94433181283487,4.9733608046227,1.19840044207362,2.68952813725088,0.518448061542388,0.135005938331691,0.210324961351382,0.285650984403804,0.441737081903227,0,0.479227355091182,0,0,0.383062014255563,0.614426133024974,0,0.274462930807229,1.04182674111352,0.279182999001381,0.56276261003168,0,0.589257170947335,1.28134512719193,0.372798891650601,0.302904773332736,0,0.289864488701678,0.860423876981386,0,0.539703191637817,0,0.448026887097336,9.26933172869562,0,0,0,0,0,0,0,0,0,0,8.44960709921044,156.139543839245,2.07818994690755,1.38788261412909,0.304465478312141,1.38369298353635,0.753613202763113,0.587943535678524,0.879666139307728,0.741584903203122,5.20557684911682,18.5768215909474,3.88240439873782,18.3298460322127,15.0311328471919,3.72783522436244,0,0,4.59822699375465,16.7741174308288,10.1983464268879,19.9500256504712,0.149790639404823,0.457500602818626,0.125654352112864,0.521472960576829,0.511430914660661,0.41557608911912,0.162241263067758,0.712875546952214,17.2925689148029,0.758168275301024,0.841767423545896,0.520481771850815,0.689706313300419,0.720248519221397,0.30140963567143,0.272145996605311,0.640568601424249,0.655912071918102,0.258703370739016,0.215567992932842,0.378212160335639,0.175951124163949,1.7535658594206,1.11218899690239,2.089512999133,0.61734640922383,0.59710280045548,9.12877143507205,12.0953516343916,19.0389544595047,0.828503090142008,0.234526059981096,0.180062061461015,0,0.393528463494808,0.925602677324269,0.465067889500816,0.268273401399619,1.05088808130453,0.329119699826961,1.31333971263276,1.70244500046297,2.19299981137998,1.3173006917463,1.8788898626452,1.26173969138476,0.102904612379284,8.26046957459495,1.32225283331772,0.426576501070468,0,1.03093969057675,2.62188582010345,1.11189021922435,0.190225626112559,1.42358718463353,0.823494773620054,2.01068167040216,2.18852119245266,0.974820435595601,1.79763881730844,2.37751854862164,1.39398891278057,0.189667900953082,0.342745537829186,3.38123207019241,0.203651327845314,0.193952487167626,0.350679099451593,0.632365371242573,0.590440591918409,0.470996183524124,0.740382983530803,1.48226313543574,4.00428253718626,3.14494392181125,4.94696647246678,4.26006254915856,4.3411888755435,5.60176873919124,8.91858026097513,7.45822043165163,2.47105271869273,7.18841032636773,7.81495990103857,1.24815069245824,2.02063102357689,1.25578189465339,0,16.4430339248278,0.568474235311454,0.488894929326078,1.35796068620151,0,1.50755631697634,0.714130922658041,0.780534591431195,4.88668946729192,3.5434350343804,6.05928120898451,11.6342953448174,12.9513736399422,6.219909519005,7.53956419696361,6.52686820582452,2.95058563811422,8.82997588175144,0.80275294993896,0.586058432961016,0,1.26235463602186,0,0,0,0,0,0,0,0,0,0.963963949265421,1.13552068166615,1.06839362200353,0.81443479676788,1.48473110675282,2.65490276679926,1.45668381692989,0.604647113929502,0.188605079755898,0.885905678642318,0.614870295887855,1.29214146584111,1.45413491791002,2.49548164869305,2.52829406348653,0,2.06271086496374,0.340439605753788,0.720244376125241,0.517434735131018,0.214337035031592,0.354680467284547,0.535106452806212,0.329098041204242,0.304464949114599,0.938686832254841,0.21183207086382,0.441056796109924,2.14352128823924,0.645857706783622,0.241251699712623,0.477489376012546,0.492422699235184,3.78925087618806,1.11255181206306,32.8072091131877,10.5257302661243,13.8895895527284,18.8368457004691,35.4038049797455,39.8074021379349,15.6380155594347,18.7534946113702,15.8929969875087,0.954670618015114,0.316335993581135,0.406638934253697,0.86404272657441,0.418176592028937,0.655087691238533,0.809186078308924,1.73572257023205,0.523511883968059,1.42576470620972,5.59205381778233,0,0,0.330916980914195,0.388902376688095,0.516639293910924,0.337912250981556,0.352071715937262,0.781226309063701,0,0,0.288030006257865,73.3145799857374,13.1771389938607,18.6933942039986,32.7400473904043,46.7259675692127,71.9226504308179,71.1557061158216,72.3678683155428,84.811817956444,72.8537071621798,86.9121715879565,83.5214037939678,106.602720537485,118.045671203385,0.226730383615211,0,0,0,0.965947970160952,3.37828455812128,2.38097111547445,0.428736758158132,3.00943262421218,0,0.920650473014354,1.14579102687879,0.515559547031063,0.685082519770642,0,0,0.900642406448441,0,0,0.207574695168353,0.399024873401031,1.36586884603307,1.21553358534147,0.628839487883947,1.2869045591501,0.666740183404846,1.64828045791115,0.962757628775446,2.52697211763797,1.52087579934144,1.88626341386076,1.87283014939765,1.47257850531199,1.55075766180156,1.42888107384922,1.62238056322798,1.73618298417335,0.824171801606613,1.61918812147837,2.40008476669791,2.66213709239006,1.66905332963125,1.59881058295561,2.1645157495526,1.18460451048347,1.28049581010941,0.526139422875686,1.35804113845862,2.80571135828869,1.66089025373844,1.57607171800902,0.818462086339379,1.85924209423159,1.15743966588685,0.749431733813838,2.10538447600868,1.93383948643468,1.3390183244819,2.20591419119516,6.26043156175138|short_description=p1@Traf3ip3}} | ||
|EntrezGene=215243 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|UniProt=G3X949,B2RPU5,Q8C0G2 | |||
|association_with_transcript=0bp_to_ENSMUST00000043550,ENSMUST00000159805,ENSMUST00000161145,ENSMUST00000161151,ENSMUST00000161403,NM_153137,uc007eec.2_5end | |||
|description=CAGE_peak_1_at_Traf3ip3_5end | |||
|id=chr1:195027629..195027778,- | |||
|ontology_enrichment_celltype=CL:0000988!2.88e-10!32;CL:0002032!2.88e-10!32;CL:0000037!2.88e-10!32;CL:0000566!2.88e-10!32;CL:0000837!2.88e-10!32;CL:0002031!2.41e-08!25;CL:0000838!3.27e-08!12;CL:0000738!7.99e-08!17;CL:0002087!7.99e-08!17;CL:0000084!1.08e-07!11;CL:0000827!1.08e-07!11;CL:0000542!2.39e-07!13;CL:0000051!2.39e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.34e-12,32;CL:0002032,1.34e-12,32;CL:0000037,1.34e-12,32;CL:0000837,1.34e-12,32;CL:0002031,1.64e-10,25;CL:0000838,2.69e-09,12;CL:0000084,1.07e-08,11;CL:0000827,1.07e-08,11;CL:0000738,1.10e-08,17;CL:0002087,1.10e-08,17;CL:0000542,4.06e-08,13;CL:0000051,4.06e-08,13;CL:0000791,1.87e-07,9;CL:0000789,1.87e-07,9;CL:0002420,1.87e-07,9;CL:0002419,1.87e-07,9;CL:0000790,1.87e-07,9;CL:0002320,5.54e-07,46;CL:0000134,5.54e-07,46;CL:0000624,9.03e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.50e-19!48;UBERON:0002405!1.61e-17!70;UBERON:0002390!1.74e-17!45;UBERON:0003061!1.74e-17!45;UBERON:0004177!1.28e-11!29;UBERON:0005057!2.58e-10!51;UBERON:0003081!1.12e-09!88;UBERON:0003408!4.06e-09!24;UBERON:0002370!7.68e-09!23;UBERON:0000974!7.68e-09!23;UBERON:0004807!7.68e-09!23;UBERON:0005058!7.68e-09!23;UBERON:0003351!7.68e-09!23;UBERON:0009113!7.68e-09!23;UBERON:0003295!7.68e-09!23;UBERON:0009722!7.68e-09!23;UBERON:0005562!7.68e-09!23;UBERON:0007690!7.68e-09!23;UBERON:0006562!4.21e-08!24;UBERON:0001557!4.21e-08!24;UBERON:0001042!4.21e-08!24;UBERON:0008814!4.21e-08!24;UBERON:0009145!4.21e-08!24;UBERON:0001041!1.38e-07!92;UBERON:0000926!6.14e-07!193;UBERON:0004120!6.14e-07!193;UBERON:0006603!6.14e-07!193;UBERON:0000077!7.04e-07!97 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,5.60e-23,48;UBERON:0002405,5.60e-23,48;UBERON:0002390,2.67e-21,45;UBERON:0003061,2.67e-21,45;UBERON:0004177,1.89e-14,29;UBERON:0005057,1.89e-14,29;UBERON:0003408,1.73e-11,24;UBERON:0002370,3.61e-11,23;UBERON:0000974,3.61e-11,23;UBERON:0004807,3.61e-11,23;UBERON:0005058,3.61e-11,23;UBERON:0003351,3.61e-11,23;UBERON:0009113,3.61e-11,23;UBERON:0003295,3.61e-11,23;UBERON:0009722,3.61e-11,23;UBERON:0005562,3.61e-11,23;UBERON:0007690,3.61e-11,23;UBERON:0006562,2.79e-10,24;UBERON:0001557,2.79e-10,24;UBERON:0001042,2.79e-10,24;UBERON:0008814,2.79e-10,24;UBERON:0009145,2.79e-10,24;UBERON:0003081,3.36e-10,87;UBERON:0000077,9.29e-10,35;UBERON:0001041,2.80e-08,80;UBERON:0001004,4.11e-08,42;UBERON:0000072,4.56e-08,27;UBERON:0000065,8.32e-08,41;UBERON:0001474,1.06e-07,22;UBERON:0004765,1.06e-07,22;UBERON:0001434,1.06e-07,22;UBERON:0002371,1.44e-07,16;UBERON:0002384,5.54e-07,46 | |||
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| |||
|short_description=p1@Traf3ip3 | |||
}} |
Revision as of 20:08, 13 September 2013
Short description: | p1@Traf3ip3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Traf3ip3_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 0bp_to_ENSMUST00000043550, ENSMUST00000159805, ENSMUST00000161145, ENSMUST00000161151, ENSMUST00000161403, NM_153137, uc007eec.2_5end |
EntrezGene: | Traf3ip3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.34e-12 | 32 |
hematopoietic oligopotent progenitor cell | 1.34e-12 | 32 |
hematopoietic stem cell | 1.34e-12 | 32 |
hematopoietic multipotent progenitor cell | 1.34e-12 | 32 |
hematopoietic lineage restricted progenitor cell | 1.64e-10 | 25 |
lymphoid lineage restricted progenitor cell | 2.69e-09 | 12 |
T cell | 1.07e-08 | 11 |
pro-T cell | 1.07e-08 | 11 |
leukocyte | 1.10e-08 | 17 |
nongranular leukocyte | 1.10e-08 | 17 |
lymphocyte | 4.06e-08 | 13 |
common lymphoid progenitor | 4.06e-08 | 13 |
mature alpha-beta T cell | 1.87e-07 | 9 |
alpha-beta T cell | 1.87e-07 | 9 |
immature T cell | 1.87e-07 | 9 |
mature T cell | 1.87e-07 | 9 |
immature alpha-beta T cell | 1.87e-07 | 9 |
connective tissue cell | 5.54e-07 | 46 |
mesenchymal cell | 5.54e-07 | 46 |
CD4-positive, alpha-beta T cell | 9.03e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 5.60e-23 | 48 |
immune system | 5.60e-23 | 48 |
hematopoietic system | 2.67e-21 | 45 |
blood island | 2.67e-21 | 45 |
hemopoietic organ | 1.89e-14 | 29 |
immune organ | 1.89e-14 | 29 |
gland of gut | 1.73e-11 | 24 |
thymus | 3.61e-11 | 23 |
neck | 3.61e-11 | 23 |
respiratory system epithelium | 3.61e-11 | 23 |
hemolymphoid system gland | 3.61e-11 | 23 |
pharyngeal epithelium | 3.61e-11 | 23 |
thymic region | 3.61e-11 | 23 |
pharyngeal gland | 3.61e-11 | 23 |
entire pharyngeal arch endoderm | 3.61e-11 | 23 |
thymus primordium | 3.61e-11 | 23 |
early pharyngeal endoderm | 3.61e-11 | 23 |
pharynx | 2.79e-10 | 24 |
upper respiratory tract | 2.79e-10 | 24 |
chordate pharynx | 2.79e-10 | 24 |
pharyngeal arch system | 2.79e-10 | 24 |
pharyngeal region of foregut | 2.79e-10 | 24 |
lateral plate mesoderm | 3.36e-10 | 87 |
mixed endoderm/mesoderm-derived structure | 9.29e-10 | 35 |
foregut | 2.80e-08 | 80 |
respiratory system | 4.11e-08 | 42 |
segment of respiratory tract | 4.56e-08 | 27 |
respiratory tract | 8.32e-08 | 41 |
bone element | 1.06e-07 | 22 |
skeletal element | 1.06e-07 | 22 |
skeletal system | 1.06e-07 | 22 |
bone marrow | 1.44e-07 | 16 |
connective tissue | 5.54e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.