FFCP PHASE1:Mm9::chr1:60237201..60237212,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:60237201..60237212,-|id=chr1:60237201..60237212,-|ontology_enrichment_celltype=CL:0002563!3.01e-11!9;CL:0002251!3.01e-11!9;CL:0000144!1.75e-10!121;CL:0000012!1.75e-10!121;CL:0000063!9.74e-10!66;CL:0000066!4.73e-09!25;CL:0002371!5.72e-09!118;CL:0000075!1.33e-08!7;CL:0000239!3.01e-08!6;CL:0000677!3.01e-08!6;CL:0000212!3.01e-08!6;CL:0000584!3.01e-08!6;CL:0000034!1.06e-07!97;CL:0000548!2.95e-07!115;CL:0000004!2.95e-07!115;CL:0000255!2.95e-07!115;CL:0002076!6.32e-07!15;CL:0000223!6.41e-07!20;CL:0000723!6.66e-07!91;CL:0000048!6.66e-07!91|ontology_enrichment_celltype_v019_2=CL:0002563,9.87e-22,9;CL:0002251,9.87e-22,9;CL:0000239,3.08e-15,6;CL:0000677,3.08e-15,6;CL:0000584,3.08e-15,6;CL:0000066,2.65e-13,25;CL:0000075,4.26e-13,7;CL:0000223,5.95e-13,20;CL:0002076,6.43e-13,15;CL:0002250,4.63e-08,3;CL:0000213,6.93e-07,1;CL:0002078,6.93e-07,1;CL:0000115,6.93e-07,1;CL:0002262,6.93e-07,1;CL:1000398,6.93e-07,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,1.06e-17,3;DOID:4045,1.06e-17,3;DOID:0050686,3.96e-15,6|ontology_enrichment_uberon=UBERON:0000485!4.73e-12!11;UBERON:0003350!3.01e-11!9;UBERON:0004808!3.01e-11!9;UBERON:0001277!3.01e-11!9;UBERON:0001242!5.93e-07!13;UBERON:0000060!5.93e-07!13;UBERON:0001262!5.93e-07!13;UBERON:0004786!5.93e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0003350,9.87e-22,9;UBERON:0004808,9.87e-22,9;UBERON:0001277,9.87e-22,9;UBERON:0000485,9.89e-18,11;UBERON:0001242,5.89e-15,13;UBERON:0001262,5.89e-15,13;UBERON:0004786,5.89e-15,13;UBERON:0000344,6.43e-13,15;UBERON:0004923,6.24e-08,24;UBERON:0000490,3.53e-07,66;UBERON:0002394,6.93e-07,1;UBERON:0001281,6.93e-07,1;UBERON:0000353,6.93e-07,1;UBERON:0003497,6.93e-07,1;UBERON:0003909,6.93e-07,1;UBERON:0003928,6.93e-07,1;UBERON:0003835,6.93e-07,1;UBERON:0003513,6.93e-07,1;UBERON:0001280,6.93e-07,1;UBERON:0004647,6.93e-07,1;UBERON:0002294,6.93e-07,1;UBERON:0001173,6.93e-07,1;UBERON:0004912,6.93e-07,1;UBERON:0005171,6.93e-07,1|phase1_expression=0.160148847104794,2.09385244583617,1.36499771816861,4.83942738090928,5.50985302940982,0.671517087647559,0.700837921786577,0.258246646883153,0.563154888606667,0.234064526321993,0,0,0.684802919724823,0.34968160967599,0,0,0,0.157731082679119,0,0,0,0,0,0,0,2.29692785646008,0.86152399231815,0,0,0,0,1.27006134691926,0.61506478758457,0,2.02196133825892,0.332469290716985,1.83752420636132,4.18531630736908,3.1253413780952,4.18818995179039,15.8822501768374,4.09827290975067,3.88408282424923,0.125896817975577,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0.207379224616955,0.270011876663381,0.210324961351382,0,0.220868540951614,0,0.0958454710182364,0.919218786610021,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,3.47837386442013,0,0.679971333707751,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0.216491041011214,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0.484875253135222,0,0,0,0,0.479260498023681,0.599902730993408,1.01656181658452,0,0,0.125654352112864,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.187403449119458,0,0.215567992932842,0.189106080167819,0,0.219195732427575,0,0,0,0,0,0.257347907114715,0.568326998791185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0.379335801906163,0,0,0.203651327845314,0,0,0,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390438744296638,0,0,0.445597348164788,0,0.404810701674894,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0.214337035031592,0.177340233642274,0.178368817602071,0,0,0,0.21183207086382,0,0,0,0,0,0.164140899745061,0,0,0,0.206386867963223,0,0,0,0,0.169978429993855,0.559805809294632,0.552799895217695,0,0,0,0.108005340821801,0,0,0.269728692769641,0.0826534557253359,0,0.129614973291793,0,0,0,0,0.194451188344048,0.129159823477731,0.168956125490778,0,0.13020438484395,0.209718688851422,0.483168241652012,0,0,0,0,0,0,0,0,0,0.201932899896295,0,0.100826185136841,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.341467211508268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:60237201..60237212,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:60237201..60237212,- | |||
|id=chr1:60237201..60237212,- | |||
|ontology_enrichment_celltype=CL:0002563!3.01e-11!9;CL:0002251!3.01e-11!9;CL:0000144!1.75e-10!121;CL:0000012!1.75e-10!121;CL:0000063!9.74e-10!66;CL:0000066!4.73e-09!25;CL:0002371!5.72e-09!118;CL:0000075!1.33e-08!7;CL:0000239!3.01e-08!6;CL:0000677!3.01e-08!6;CL:0000212!3.01e-08!6;CL:0000584!3.01e-08!6;CL:0000034!1.06e-07!97;CL:0000548!2.95e-07!115;CL:0000004!2.95e-07!115;CL:0000255!2.95e-07!115;CL:0002076!6.32e-07!15;CL:0000223!6.41e-07!20;CL:0000723!6.66e-07!91;CL:0000048!6.66e-07!91 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,9.87e-22,9;CL:0002251,9.87e-22,9;CL:0000239,3.08e-15,6;CL:0000677,3.08e-15,6;CL:0000584,3.08e-15,6;CL:0000066,2.65e-13,25;CL:0000075,4.26e-13,7;CL:0000223,5.95e-13,20;CL:0002076,6.43e-13,15;CL:0002250,4.63e-08,3;CL:0000213,6.93e-07,1;CL:0002078,6.93e-07,1;CL:0000115,6.93e-07,1;CL:0002262,6.93e-07,1;CL:1000398,6.93e-07,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,1.06e-17,3;DOID:4045,1.06e-17,3;DOID:0050686,3.96e-15,6 | |||
|ontology_enrichment_uberon=UBERON:0000485!4.73e-12!11;UBERON:0003350!3.01e-11!9;UBERON:0004808!3.01e-11!9;UBERON:0001277!3.01e-11!9;UBERON:0001242!5.93e-07!13;UBERON:0000060!5.93e-07!13;UBERON:0001262!5.93e-07!13;UBERON:0004786!5.93e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,9.87e-22,9;UBERON:0004808,9.87e-22,9;UBERON:0001277,9.87e-22,9;UBERON:0000485,9.89e-18,11;UBERON:0001242,5.89e-15,13;UBERON:0001262,5.89e-15,13;UBERON:0004786,5.89e-15,13;UBERON:0000344,6.43e-13,15;UBERON:0004923,6.24e-08,24;UBERON:0000490,3.53e-07,66;UBERON:0002394,6.93e-07,1;UBERON:0001281,6.93e-07,1;UBERON:0000353,6.93e-07,1;UBERON:0003497,6.93e-07,1;UBERON:0003909,6.93e-07,1;UBERON:0003928,6.93e-07,1;UBERON:0003835,6.93e-07,1;UBERON:0003513,6.93e-07,1;UBERON:0001280,6.93e-07,1;UBERON:0004647,6.93e-07,1;UBERON:0002294,6.93e-07,1;UBERON:0001173,6.93e-07,1;UBERON:0004912,6.93e-07,1;UBERON:0005171,6.93e-07,1 | |||
|phase1_expression=0.160148847104794,2.09385244583617,1.36499771816861,4.83942738090928,5.50985302940982,0.671517087647559,0.700837921786577,0.258246646883153,0.563154888606667,0.234064526321993,0,0,0.684802919724823,0.34968160967599,0,0,0,0.157731082679119,0,0,0,0,0,0,0,2.29692785646008,0.86152399231815,0,0,0,0,1.27006134691926,0.61506478758457,0,2.02196133825892,0.332469290716985,1.83752420636132,4.18531630736908,3.1253413780952,4.18818995179039,15.8822501768374,4.09827290975067,3.88408282424923,0.125896817975577,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0.207379224616955,0.270011876663381,0.210324961351382,0,0.220868540951614,0,0.0958454710182364,0.919218786610021,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,3.47837386442013,0,0.679971333707751,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0.216491041011214,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0.484875253135222,0,0,0,0,0.479260498023681,0.599902730993408,1.01656181658452,0,0,0.125654352112864,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.187403449119458,0,0.215567992932842,0.189106080167819,0,0.219195732427575,0,0,0,0,0,0.257347907114715,0.568326998791185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0.379335801906163,0,0,0.203651327845314,0,0,0,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390438744296638,0,0,0.445597348164788,0,0.404810701674894,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0.214337035031592,0.177340233642274,0.178368817602071,0,0,0,0.21183207086382,0,0,0,0,0,0.164140899745061,0,0,0,0.206386867963223,0,0,0,0,0.169978429993855,0.559805809294632,0.552799895217695,0,0,0,0.108005340821801,0,0,0.269728692769641,0.0826534557253359,0,0.129614973291793,0,0,0,0,0.194451188344048,0.129159823477731,0.168956125490778,0,0.13020438484395,0.209718688851422,0.483168241652012,0,0,0,0,0,0,0,0,0,0.201932899896295,0,0.100826185136841,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.341467211508268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:60237201..60237212,- | |||
}} |
Revision as of 20:38, 13 September 2013
Short description: | p@chr1:60237201..60237212, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:60237201..60237212, - |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 9.87e-22 | 9 |
epithelial cell of alimentary canal | 9.87e-22 | 9 |
brush border epithelial cell | 3.08e-15 | 6 |
gut absorptive cell | 3.08e-15 | 6 |
enterocyte | 3.08e-15 | 6 |
epithelial cell | 2.65e-13 | 25 |
columnar/cuboidal epithelial cell | 4.26e-13 | 7 |
endodermal cell | 5.95e-13 | 20 |
endo-epithelial cell | 6.43e-13 | 15 |
intestinal crypt stem cell | 4.63e-08 | 3 |
lining cell | 6.93e-07 | 1 |
meso-epithelial cell | 6.93e-07 | 1 |
endothelial cell | 6.93e-07 | 1 |
endothelial cell of sinusoid | 6.93e-07 | 1 |
endothelial cell of hepatic sinusoid | 6.93e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 9.87e-22 | 9 |
gastrointestinal system epithelium | 9.87e-22 | 9 |
intestinal epithelium | 9.87e-22 | 9 |
simple columnar epithelium | 9.89e-18 | 11 |
intestinal mucosa | 5.89e-15 | 13 |
wall of intestine | 5.89e-15 | 13 |
gastrointestinal system mucosa | 5.89e-15 | 13 |
mucosa | 6.43e-13 | 15 |
organ component layer | 6.24e-08 | 24 |
unilaminar epithelium | 3.53e-07 | 66 |
bile duct | 6.93e-07 | 1 |
hepatic sinusoid | 6.93e-07 | 1 |
parenchyma | 6.93e-07 | 1 |
abdomen blood vessel | 6.93e-07 | 1 |
sinusoid | 6.93e-07 | 1 |
digestive system duct | 6.93e-07 | 1 |
abdominal segment blood vessel | 6.93e-07 | 1 |
trunk blood vessel | 6.93e-07 | 1 |
liver parenchyma | 6.93e-07 | 1 |
liver lobule | 6.93e-07 | 1 |
biliary system | 6.93e-07 | 1 |
biliary tree | 6.93e-07 | 1 |
biliary bud | 6.93e-07 | 1 |
hepatic duct | 6.93e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 1.06e-17 | 3 |
muscle cancer | 1.06e-17 | 3 |
organ system cancer | 3.96e-15 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.