FFCP PHASE1:Mm9::chr2:119430487..119430509,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=145|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:119430487..119430509,+|id=chr2:119430487..119430509,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002021!3.48e-08!10;UBERON:0000411!3.48e-08!10;UBERON:0001950!3.48e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0002021,7.01e-24,10;UBERON:0000411,7.01e-24,10;UBERON:0001950,7.01e-24,10;UBERON:0002619,3.98e-13,17;UBERON:0002020,3.97e-11,34;UBERON:0000956,3.29e-10,21;UBERON:0001869,3.29e-10,21;UBERON:0000203,3.29e-10,21;UBERON:0010314,3.52e-10,92;UBERON:0003528,8.36e-10,29;UBERON:0002791,8.36e-10,29;UBERON:0001893,8.36e-10,29;UBERON:0004111,6.80e-08,122;UBERON:0000073,8.51e-08,54;UBERON:0000025,3.31e-07,114;UBERON:0001049,3.94e-07,52;UBERON:0005068,3.94e-07,52;UBERON:0006241,3.94e-07,52;UBERON:0007135,3.94e-07,52;UBERON:0002346,5.33e-07,64;UBERON:0003075,5.33e-07,64;UBERON:0007284,5.33e-07,64|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0.140788722151667,0,0.34243593645101,0.0797721589953364,0,0.0874204024189974,0.333109761815663,0.809901069559304,0,0.157731082679119,0.137114433605739,0.42438965179803,0.0850432901510698,0.0992909512008853,0,0.159992422793407,0.45881856213434,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0.523523743973798,0.588231488031014,0.683045484958446,0,0.377690453926732,0.304130793658544,0,0,0,0,0,0,0,0.167782606057736,0,0,0.514518872071894,0,1.03134418455488,0,0.528990979272033,0,0,0,0,0,0,0,0,0.311068836925433,0,0,0,0.220868540951614,0,0.0958454710182364,0,0,0.893811366596314,1.22885226604995,0.131886287730194,0.457438218012048,0,1.11673199600552,1.68828783009504,0.45839474333043,3.83017161115768,1.13897344639282,0.372798891650601,0,0.0755715601067855,0.289864488701678,0,0,0.539703191637817,1.29955283489534,0,0.421333260395256,0,0,0.35333957451034,0,0,0,0,0,0,0,0.22836775943812,0,0.29688427812965,0.346970653532272,0.304465478312141,0.230615497256059,0.60289056221049,0.23517741427141,0.251333182659351,0.494389935468748,0,1.76922110389975,0.161766849947409,0.220841518460394,1.45462575940567,0,0.585561594023094,1.04723353406728,0,0.11981512450592,0,0,0.898743836428936,0,0.376963056338593,0.869121600961382,1.02286182932132,0.41557608911912,0.811206315338788,0.101839363850316,0.622034853050465,0.505445516867349,0.210441855886474,1.17108398666433,0.229902104433473,0.180062129805349,0.60281927134286,0.204109497453984,0.384341160854549,0.187403449119458,1.81092359517311,0,0.189106080167819,0.175951124163949,0.219195732427575,0.556094498451196,0.696504333044333,0.205782136407943,0.398068533636986,0,0,0,0.207125772535502,0.938104239924385,0.900310307305074,0,0.983821158737019,1.07986979021165,1.39520366850245,0.268273401399619,1.16765342367169,0.329119699826961,1.97000956894914,0.891756905004413,1.16959989940266,1.75640092232841,0.671032093801859,0.210289948564127,0.617427674275707,0,0,0.213288250535234,1.16118335930219,0.257734922644187,0.605050573870028,0.22237804384487,0,0,0.329397909448022,0.502670417600539,0,0.19496408711912,0,0.432276099749388,0.398282546508734,0,0.456994050438915,0,0.814605311381257,0.581857461502877,0.210407459670956,0.252946148497029,0.442830443938806,0.941992367048249,0.370191491765402,0,0.500535317148282,0.196558995113203,0.224862112384854,0.202860121388503,0.241177159752417,0,0,0.486405680325106,0.549122826376163,4.31304619582064,0,0,0,0,0.964887042726734,0.184753190166605,0.189491411770485,0,0.169745085775188,0.234690248288502,0,0.952174563544055,0.195133647857799,0.630540576424764,0.664394068946325,0.318909537314974,0.983179888294428,0.518054945597687,1.3018415272336,1.50791283939272,0,0,0,0.963303539926752,0.703270119553219,0.163934945376675,2.27223834483936,0,0,0.430846795465598,0,0.222798674082394,0.283076530788832,0,0.584511715822624,0,0.321321316421807,0,0.178065603667255,0.325773918707152,0.164970122972535,0,0.242780636154981,0.302323556964751,0.377210159511796,0,0,0.258428293168221,0,0,0,0,0,0,0.540183282093931,0,0.214337035031592,0,0.356737635204141,0.493647061806363,0,0.23467170806371,0,0.220528398054962,0.16488625294148,0.322928853391811,0.0603129249281559,0,0.164140899745061,0.582961673259701,0.370850604021019,0.170870880797853,0,1.11116716421827,0.941842285023455,0.820165366326151,0.228778173206523,0,0,0.138199973804424,2.86401185404534,0.158167996790568,0.406638934253697,0.108005340821801,0,0.436725127492355,0.134864346384821,0.247960367176008,0,0.518459893167171,1.24267862617385,0,0,0,0.388902376688095,0.258319646955462,0.337912250981556,0.938857909166032,0.13020438484395,0.209718688851422,0.724752362478018,0.288030006257865,0,0,0.616265742988964,0.649604114888975,0.179026695667481,0,0.360586348559907,0.886137163047463,0.302899349844443,0.0762068066549998,0.201652370273681,0.292373642219257,0.481059208201647,0.584384510907845,1.13365191807606,0,0.0897138566094757,0,0.19318959403219,0,0.18315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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=145 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:119430487..119430509,+ | |||
|id=chr2:119430487..119430509,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002021!3.48e-08!10;UBERON:0000411!3.48e-08!10;UBERON:0001950!3.48e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,7.01e-24,10;UBERON:0000411,7.01e-24,10;UBERON:0001950,7.01e-24,10;UBERON:0002619,3.98e-13,17;UBERON:0002020,3.97e-11,34;UBERON:0000956,3.29e-10,21;UBERON:0001869,3.29e-10,21;UBERON:0000203,3.29e-10,21;UBERON:0010314,3.52e-10,92;UBERON:0003528,8.36e-10,29;UBERON:0002791,8.36e-10,29;UBERON:0001893,8.36e-10,29;UBERON:0004111,6.80e-08,122;UBERON:0000073,8.51e-08,54;UBERON:0000025,3.31e-07,114;UBERON:0001049,3.94e-07,52;UBERON:0005068,3.94e-07,52;UBERON:0006241,3.94e-07,52;UBERON:0007135,3.94e-07,52;UBERON:0002346,5.33e-07,64;UBERON:0003075,5.33e-07,64;UBERON:0007284,5.33e-07,64 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0.140788722151667,0,0.34243593645101,0.0797721589953364,0,0.0874204024189974,0.333109761815663,0.809901069559304,0,0.157731082679119,0.137114433605739,0.42438965179803,0.0850432901510698,0.0992909512008853,0,0.159992422793407,0.45881856213434,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0.523523743973798,0.588231488031014,0.683045484958446,0,0.377690453926732,0.304130793658544,0,0,0,0,0,0,0,0.167782606057736,0,0,0.514518872071894,0,1.03134418455488,0,0.528990979272033,0,0,0,0,0,0,0,0,0.311068836925433,0,0,0,0.220868540951614,0,0.0958454710182364,0,0,0.893811366596314,1.22885226604995,0.131886287730194,0.457438218012048,0,1.11673199600552,1.68828783009504,0.45839474333043,3.83017161115768,1.13897344639282,0.372798891650601,0,0.0755715601067855,0.289864488701678,0,0,0.539703191637817,1.29955283489534,0,0.421333260395256,0,0,0.35333957451034,0,0,0,0,0,0,0,0.22836775943812,0,0.29688427812965,0.346970653532272,0.304465478312141,0.230615497256059,0.60289056221049,0.23517741427141,0.251333182659351,0.494389935468748,0,1.76922110389975,0.161766849947409,0.220841518460394,1.45462575940567,0,0.585561594023094,1.04723353406728,0,0.11981512450592,0,0,0.898743836428936,0,0.376963056338593,0.869121600961382,1.02286182932132,0.41557608911912,0.811206315338788,0.101839363850316,0.622034853050465,0.505445516867349,0.210441855886474,1.17108398666433,0.229902104433473,0.180062129805349,0.60281927134286,0.204109497453984,0.384341160854549,0.187403449119458,1.81092359517311,0,0.189106080167819,0.175951124163949,0.219195732427575,0.556094498451196,0.696504333044333,0.205782136407943,0.398068533636986,0,0,0,0.207125772535502,0.938104239924385,0.900310307305074,0,0.983821158737019,1.07986979021165,1.39520366850245,0.268273401399619,1.16765342367169,0.329119699826961,1.97000956894914,0.891756905004413,1.16959989940266,1.75640092232841,0.671032093801859,0.210289948564127,0.617427674275707,0,0,0.213288250535234,1.16118335930219,0.257734922644187,0.605050573870028,0.22237804384487,0,0,0.329397909448022,0.502670417600539,0,0.19496408711912,0,0.432276099749388,0.398282546508734,0,0.456994050438915,0,0.814605311381257,0.581857461502877,0.210407459670956,0.252946148497029,0.442830443938806,0.941992367048249,0.370191491765402,0,0.500535317148282,0.196558995113203,0.224862112384854,0.202860121388503,0.241177159752417,0,0,0.486405680325106,0.549122826376163,4.31304619582064,0,0,0,0,0.964887042726734,0.184753190166605,0.189491411770485,0,0.169745085775188,0.234690248288502,0,0.952174563544055,0.195133647857799,0.630540576424764,0.664394068946325,0.318909537314974,0.983179888294428,0.518054945597687,1.3018415272336,1.50791283939272,0,0,0,0.963303539926752,0.703270119553219,0.163934945376675,2.27223834483936,0,0,0.430846795465598,0,0.222798674082394,0.283076530788832,0,0.584511715822624,0,0.321321316421807,0,0.178065603667255,0.325773918707152,0.164970122972535,0,0.242780636154981,0.302323556964751,0.377210159511796,0,0,0.258428293168221,0,0,0,0,0,0,0.540183282093931,0,0.214337035031592,0,0.356737635204141,0.493647061806363,0,0.23467170806371,0,0.220528398054962,0.16488625294148,0.322928853391811,0.0603129249281559,0,0.164140899745061,0.582961673259701,0.370850604021019,0.170870880797853,0,1.11116716421827,0.941842285023455,0.820165366326151,0.228778173206523,0,0,0.138199973804424,2.86401185404534,0.158167996790568,0.406638934253697,0.108005340821801,0,0.436725127492355,0.134864346384821,0.247960367176008,0,0.518459893167171,1.24267862617385,0,0,0,0.388902376688095,0.258319646955462,0.337912250981556,0.938857909166032,0.13020438484395,0.209718688851422,0.724752362478018,0.288030006257865,0,0,0.616265742988964,0.649604114888975,0.179026695667481,0,0.360586348559907,0.886137163047463,0.302899349844443,0.0762068066549998,0.201652370273681,0.292373642219257,0.481059208201647,0.584384510907845,1.13365191807606,0,0.0897138566094757,0,0.19318959403219,0,0.183151624267265,0,0,8.471277639256,2.30162618253588,2.86447756719698,3.60891682921744,1.37016503954128,1.5107877947794,2.02506750069542,1.80128481289688,2.71885445390523,3.62432218226274,0.31136204275253,0.399024873401031,0.341467211508268,0.486213434136588,0.419226325255965,0,0.44449345560323,0.206035057238894,0.320919209591815,1.01078884705519,0,0.188626341386076,0.655490552289177,0.192075457214608,0.17230640686684,0,0.115884325944855,0.578727661391115,0.412085900803307,0.147198920134397,0.342869252385415,0.354951612318675,0.715308569841963,0.145346416632329,0.188218760830661,0.338458431566706,0.548783918618318,0.263069711437843,0.407412341537585,1.12228454331548,0,0,0.818462086339379,0.309873682371932,0.385813221962283,0.249810577937946,0.233931608445408,0.214871054048298,0.191288332068843,0.220591419119515,0.231867835620421 | |||
|short_description=p@chr2:119430487..119430509,+ | |||
}} |
Revision as of 21:47, 13 September 2013
Short description: | p@chr2:119430487..119430509, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:119430487..119430509, + |
Coexpression cluster: | MCL_coexpression_mm9:145 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 7.01e-24 | 10 |
visual cortex | 7.01e-24 | 10 |
neocortex | 7.01e-24 | 10 |
regional part of cerebral cortex | 3.98e-13 | 17 |
gray matter | 3.97e-11 | 34 |
cerebral cortex | 3.29e-10 | 21 |
cerebral hemisphere | 3.29e-10 | 21 |
pallium | 3.29e-10 | 21 |
structure with developmental contribution from neural crest | 3.52e-10 | 92 |
brain grey matter | 8.36e-10 | 29 |
regional part of telencephalon | 8.36e-10 | 29 |
telencephalon | 8.36e-10 | 29 |
anatomical conduit | 6.80e-08 | 122 |
regional part of nervous system | 8.51e-08 | 54 |
tube | 3.31e-07 | 114 |
neural tube | 3.94e-07 | 52 |
neural rod | 3.94e-07 | 52 |
future spinal cord | 3.94e-07 | 52 |
neural keel | 3.94e-07 | 52 |
neurectoderm | 5.33e-07 | 64 |
neural plate | 5.33e-07 | 64 |
presumptive neural plate | 5.33e-07 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.