FFCP PHASE1:Mm9::chr4:120648047..120648070,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=69780|HGNC=|MCL_coexpression_id=1224|UniProt=|association_with_transcript=242bp_to_ENSMUST00000151615_5end|description=CAGE_peak_5_at_Smap2_5end|id=chr4:120648047..120648070,-|ontology_enrichment_celltype=CL:0000791!9.13e-08!9;CL:0000789!9.13e-08!9;CL:0002420!9.13e-08!9;CL:0002419!9.13e-08!9;CL:0000790!9.13e-08!9;CL:0002031!1.80e-07!25;CL:0000838!7.34e-07!12;CL:0000988!9.83e-07!32;CL:0002032!9.83e-07!32;CL:0000037!9.83e-07!32;CL:0000566!9.83e-07!32;CL:0000837!9.83e-07!32|ontology_enrichment_celltype_v019_2=CL:0002031,4.74e-09,25;CL:0000838,2.12e-08,12;CL:0000542,9.87e-08,13;CL:0000051,9.87e-08,13;CL:0000791,1.11e-07,9;CL:0000789,1.11e-07,9;CL:0002420,1.11e-07,9;CL:0002419,1.11e-07,9;CL:0000790,1.11e-07,9;CL:0000988,7.95e-07,32;CL:0002032,7.95e-07,32;CL:0000037,7.95e-07,32;CL:0000837,7.95e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!8.85e-19!29;UBERON:0002390!3.58e-18!45;UBERON:0003061!3.58e-18!45;UBERON:0002193!6.16e-18!48;UBERON:0003408!1.71e-15!24;UBERON:0001004!7.00e-15!42;UBERON:0002370!1.30e-14!23;UBERON:0000974!1.30e-14!23;UBERON:0004807!1.30e-14!23;UBERON:0005058!1.30e-14!23;UBERON:0003351!1.30e-14!23;UBERON:0009113!1.30e-14!23;UBERON:0003295!1.30e-14!23;UBERON:0009722!1.30e-14!23;UBERON:0005562!1.30e-14!23;UBERON:0007690!1.30e-14!23;UBERON:0000065!4.36e-14!41;UBERON:0006562!9.99e-14!24;UBERON:0001557!9.99e-14!24;UBERON:0001042!9.99e-14!24;UBERON:0008814!9.99e-14!24;UBERON:0009145!9.99e-14!24;UBERON:0000072!1.77e-11!27;UBERON:0002405!2.10e-11!70;UBERON:0005057!9.70e-10!51;UBERON:0003081!1.79e-08!88;UBERON:0000063!2.11e-08!35;UBERON:0001041!2.18e-08!92;UBERON:0000077!6.55e-08!97;UBERON:0005911!7.10e-07!69|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.81e-22,23;UBERON:0000974,1.81e-22,23;UBERON:0004807,1.81e-22,23;UBERON:0005058,1.81e-22,23;UBERON:0003351,1.81e-22,23;UBERON:0009113,1.81e-22,23;UBERON:0003295,1.81e-22,23;UBERON:0009722,1.81e-22,23;UBERON:0005562,1.81e-22,23;UBERON:0007690,1.81e-22,23;UBERON:0006562,1.90e-21,24;UBERON:0003408,1.90e-21,24;UBERON:0001557,1.90e-21,24;UBERON:0001042,1.90e-21,24;UBERON:0008814,1.90e-21,24;UBERON:0009145,1.90e-21,24;UBERON:0004177,2.27e-20,29;UBERON:0005057,2.27e-20,29;UBERON:0002193,2.29e-20,48;UBERON:0002405,2.29e-20,48;UBERON:0002390,4.24e-19,45;UBERON:0003061,4.24e-19,45;UBERON:0000072,7.81e-19,27;UBERON:0000077,1.74e-16,35;UBERON:0007811,1.33e-13,36;UBERON:0000065,1.10e-11,41;UBERON:0001004,2.33e-11,42;UBERON:0000153,4.80e-11,43;UBERON:0003081,1.72e-08,87;UBERON:0003929,3.55e-08,55;UBERON:0002368,2.55e-07,60|phase1_expression=0,0,0,0,0,0,0,0.516493293766305,0.422366166455,0.468129052643987,0,0.239316476986009,7.19043065711064,9.17914225399473,0.666219523631325,0.809901069559304,0,2.5236973228659,2.4680598049033,1.27316895539409,0.340173160604279,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8456086666351,3.62681071005672,19.8295341494054,0,0,0,0.202316460859598,0,0,0,0,0.449949858640699,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,0,0.127687338085188,0.307213066512487,0,0,0,0,0,0.30559649555362,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0.170430322578058,0,0,0,0,0,0,0,0,0,0.22836775943812,6.99132285847364,0,0,0,0,0,0,0,0,0.433798070759735,0,0,0,0,0,0.292780797011547,0,0,0.718890747035522,0,0.762421362438388,0,0,0,0,0.255715457330331,0,0.162241263067758,0.203678727700633,0.124406970610093,0,0.210441855886474,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0.232236671860439,0,0,0.22237804384487,0,0,0,0.251335208800269,0,0.38992817423824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0.312037673114561,0,0,0.482443521363367,0.739012760666419,0,0,0,0,0,0.238043640886014,0.195133647857799,0.157635144106191,0.44292937929755,0.159454768657487,0.491589944147214,0.690739927463582,0.289298117163023,0,0.54390568381871,0,0.275936746304732,0,0,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,1.02522528478712,0.206386867963223,0.185194527369712,0.565105371014073,0.410082683163076,0.228778173206523,3.73952545986482,4.3384950220334,3.73139929271944,0.954670618015114,0,0,0,0,0,0,0,0.26175594198403,0.129614973291793,0.621339313086926,0,0,0,0.194451188344048,0,0,0,0,0,0,0,2.8441000856536,0.405450430580328,0.616265742988964,0.25984164595559,0.179026695667481,1.58945083825012,1.80293174279953,2.06765338044408,3.23092639834072,2.362411006305,3.12561173924206,2.53390489923356,3.84847366561318,5.72696820689688,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0|short_description=p5@Smap2}} | ||
|EntrezGene=69780 | |||
|HGNC= | |||
|MCL_coexpression_id=1224 | |||
|UniProt= | |||
|association_with_transcript=242bp_to_ENSMUST00000151615_5end | |||
|description=CAGE_peak_5_at_Smap2_5end | |||
|id=chr4:120648047..120648070,- | |||
|ontology_enrichment_celltype=CL:0000791!9.13e-08!9;CL:0000789!9.13e-08!9;CL:0002420!9.13e-08!9;CL:0002419!9.13e-08!9;CL:0000790!9.13e-08!9;CL:0002031!1.80e-07!25;CL:0000838!7.34e-07!12;CL:0000988!9.83e-07!32;CL:0002032!9.83e-07!32;CL:0000037!9.83e-07!32;CL:0000566!9.83e-07!32;CL:0000837!9.83e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,4.74e-09,25;CL:0000838,2.12e-08,12;CL:0000542,9.87e-08,13;CL:0000051,9.87e-08,13;CL:0000791,1.11e-07,9;CL:0000789,1.11e-07,9;CL:0002420,1.11e-07,9;CL:0002419,1.11e-07,9;CL:0000790,1.11e-07,9;CL:0000988,7.95e-07,32;CL:0002032,7.95e-07,32;CL:0000037,7.95e-07,32;CL:0000837,7.95e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!8.85e-19!29;UBERON:0002390!3.58e-18!45;UBERON:0003061!3.58e-18!45;UBERON:0002193!6.16e-18!48;UBERON:0003408!1.71e-15!24;UBERON:0001004!7.00e-15!42;UBERON:0002370!1.30e-14!23;UBERON:0000974!1.30e-14!23;UBERON:0004807!1.30e-14!23;UBERON:0005058!1.30e-14!23;UBERON:0003351!1.30e-14!23;UBERON:0009113!1.30e-14!23;UBERON:0003295!1.30e-14!23;UBERON:0009722!1.30e-14!23;UBERON:0005562!1.30e-14!23;UBERON:0007690!1.30e-14!23;UBERON:0000065!4.36e-14!41;UBERON:0006562!9.99e-14!24;UBERON:0001557!9.99e-14!24;UBERON:0001042!9.99e-14!24;UBERON:0008814!9.99e-14!24;UBERON:0009145!9.99e-14!24;UBERON:0000072!1.77e-11!27;UBERON:0002405!2.10e-11!70;UBERON:0005057!9.70e-10!51;UBERON:0003081!1.79e-08!88;UBERON:0000063!2.11e-08!35;UBERON:0001041!2.18e-08!92;UBERON:0000077!6.55e-08!97;UBERON:0005911!7.10e-07!69 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.81e-22,23;UBERON:0000974,1.81e-22,23;UBERON:0004807,1.81e-22,23;UBERON:0005058,1.81e-22,23;UBERON:0003351,1.81e-22,23;UBERON:0009113,1.81e-22,23;UBERON:0003295,1.81e-22,23;UBERON:0009722,1.81e-22,23;UBERON:0005562,1.81e-22,23;UBERON:0007690,1.81e-22,23;UBERON:0006562,1.90e-21,24;UBERON:0003408,1.90e-21,24;UBERON:0001557,1.90e-21,24;UBERON:0001042,1.90e-21,24;UBERON:0008814,1.90e-21,24;UBERON:0009145,1.90e-21,24;UBERON:0004177,2.27e-20,29;UBERON:0005057,2.27e-20,29;UBERON:0002193,2.29e-20,48;UBERON:0002405,2.29e-20,48;UBERON:0002390,4.24e-19,45;UBERON:0003061,4.24e-19,45;UBERON:0000072,7.81e-19,27;UBERON:0000077,1.74e-16,35;UBERON:0007811,1.33e-13,36;UBERON:0000065,1.10e-11,41;UBERON:0001004,2.33e-11,42;UBERON:0000153,4.80e-11,43;UBERON:0003081,1.72e-08,87;UBERON:0003929,3.55e-08,55;UBERON:0002368,2.55e-07,60 | |||
|phase1_expression=0,0,0,0,0,0,0,0.516493293766305,0.422366166455,0.468129052643987,0,0.239316476986009,7.19043065711064,9.17914225399473,0.666219523631325,0.809901069559304,0,2.5236973228659,2.4680598049033,1.27316895539409,0.340173160604279,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8456086666351,3.62681071005672,19.8295341494054,0,0,0,0.202316460859598,0,0,0,0,0.449949858640699,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,0,0.127687338085188,0.307213066512487,0,0,0,0,0,0.30559649555362,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0.170430322578058,0,0,0,0,0,0,0,0,0,0.22836775943812,6.99132285847364,0,0,0,0,0,0,0,0,0.433798070759735,0,0,0,0,0,0.292780797011547,0,0,0.718890747035522,0,0.762421362438388,0,0,0,0,0.255715457330331,0,0.162241263067758,0.203678727700633,0.124406970610093,0,0.210441855886474,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0.232236671860439,0,0,0.22237804384487,0,0,0,0.251335208800269,0,0.38992817423824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0.312037673114561,0,0,0.482443521363367,0.739012760666419,0,0,0,0,0,0.238043640886014,0.195133647857799,0.157635144106191,0.44292937929755,0.159454768657487,0.491589944147214,0.690739927463582,0.289298117163023,0,0.54390568381871,0,0.275936746304732,0,0,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,1.02522528478712,0.206386867963223,0.185194527369712,0.565105371014073,0.410082683163076,0.228778173206523,3.73952545986482,4.3384950220334,3.73139929271944,0.954670618015114,0,0,0,0,0,0,0,0.26175594198403,0.129614973291793,0.621339313086926,0,0,0,0.194451188344048,0,0,0,0,0,0,0,2.8441000856536,0.405450430580328,0.616265742988964,0.25984164595559,0.179026695667481,1.58945083825012,1.80293174279953,2.06765338044408,3.23092639834072,2.362411006305,3.12561173924206,2.53390489923356,3.84847366561318,5.72696820689688,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0 | |||
|short_description=p5@Smap2 | |||
}} |
Revision as of 03:39, 14 September 2013
Short description: | p5@Smap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Smap2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1224 |
Association with transcript: | 242bp_to_ENSMUST00000151615_5end |
EntrezGene: | Smap2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 4.74e-09 | 25 |
lymphoid lineage restricted progenitor cell | 2.12e-08 | 12 |
lymphocyte | 9.87e-08 | 13 |
common lymphoid progenitor | 9.87e-08 | 13 |
mature alpha-beta T cell | 1.11e-07 | 9 |
alpha-beta T cell | 1.11e-07 | 9 |
immature T cell | 1.11e-07 | 9 |
mature T cell | 1.11e-07 | 9 |
immature alpha-beta T cell | 1.11e-07 | 9 |
hematopoietic cell | 7.95e-07 | 32 |
hematopoietic oligopotent progenitor cell | 7.95e-07 | 32 |
hematopoietic stem cell | 7.95e-07 | 32 |
hematopoietic multipotent progenitor cell | 7.95e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.81e-22 | 23 |
neck | 1.81e-22 | 23 |
respiratory system epithelium | 1.81e-22 | 23 |
hemolymphoid system gland | 1.81e-22 | 23 |
pharyngeal epithelium | 1.81e-22 | 23 |
thymic region | 1.81e-22 | 23 |
pharyngeal gland | 1.81e-22 | 23 |
entire pharyngeal arch endoderm | 1.81e-22 | 23 |
thymus primordium | 1.81e-22 | 23 |
early pharyngeal endoderm | 1.81e-22 | 23 |
pharynx | 1.90e-21 | 24 |
gland of gut | 1.90e-21 | 24 |
upper respiratory tract | 1.90e-21 | 24 |
chordate pharynx | 1.90e-21 | 24 |
pharyngeal arch system | 1.90e-21 | 24 |
pharyngeal region of foregut | 1.90e-21 | 24 |
hemopoietic organ | 2.27e-20 | 29 |
immune organ | 2.27e-20 | 29 |
hemolymphoid system | 2.29e-20 | 48 |
immune system | 2.29e-20 | 48 |
hematopoietic system | 4.24e-19 | 45 |
blood island | 4.24e-19 | 45 |
segment of respiratory tract | 7.81e-19 | 27 |
mixed endoderm/mesoderm-derived structure | 1.74e-16 | 35 |
craniocervical region | 1.33e-13 | 36 |
respiratory tract | 1.10e-11 | 41 |
respiratory system | 2.33e-11 | 42 |
anterior region of body | 4.80e-11 | 43 |
lateral plate mesoderm | 1.72e-08 | 87 |
gut epithelium | 3.55e-08 | 55 |
endocrine gland | 2.55e-07 | 60 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.