FFCP PHASE1:Mm9::chr4:147504851..147504881,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71890|HGNC=|MCL_coexpression_id=22|UniProt=Q9D752|association_with_transcript=-142bp_to_ENSMUST00000084129_5end|description=CAGE_peak_6_at_Mad2l2_5end|id=chr4:147504851..147504881,+|ontology_enrichment_celltype=CL:0000117!1.39e-09!23;CL:0000337!1.39e-09!23;CL:0000221!2.67e-09!44;CL:0000133!2.67e-09!44;CL:0002319!5.33e-09!43;CL:0000540!7.74e-09!33;CL:0000047!7.74e-09!33;CL:0000031!7.74e-09!33;CL:0000404!7.74e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.76e-14,23;CL:0000337,1.76e-14,23;CL:0002319,7.99e-11,43;CL:0000540,8.47e-11,33;CL:0000047,8.47e-11,33;CL:0000031,8.47e-11,33;CL:0000404,8.47e-11,33;CL:0000221,2.03e-10,44;CL:0000133,2.03e-10,44;CL:0002609,2.17e-09,6;CL:0000393,3.00e-08,39;CL:0000211,3.00e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.12e-13!73;UBERON:0005743!1.12e-13!73;UBERON:0002346!4.69e-13!71;UBERON:0003075!4.69e-13!71;UBERON:0007284!4.69e-13!71;UBERON:0004121!6.14e-13!102;UBERON:0000924!6.14e-13!102;UBERON:0006601!6.14e-13!102;UBERON:0000073!1.10e-12!75;UBERON:0001016!1.10e-12!75;UBERON:0001049!1.65e-11!52;UBERON:0005068!1.65e-11!52;UBERON:0006241!1.65e-11!52;UBERON:0007135!1.65e-11!52;UBERON:0003056!2.29e-11!49;UBERON:0000033!3.21e-11!63;UBERON:0000955!4.36e-08!50;UBERON:0006238!4.36e-08!50;UBERON:0003080!5.45e-08!40;UBERON:0002616!6.87e-08!49;UBERON:0002780!1.38e-07!39;UBERON:0001890!1.38e-07!39;UBERON:0006240!1.38e-07!39;UBERON:0002020!3.17e-07!34;UBERON:0000153!5.54e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.33e-14,64;UBERON:0003075,2.33e-14,64;UBERON:0007284,2.33e-14,64;UBERON:0010371,2.19e-12,73;UBERON:0003056,2.45e-12,49;UBERON:0004121,4.19e-12,95;UBERON:0000924,4.19e-12,95;UBERON:0006601,4.19e-12,95;UBERON:0001017,9.31e-12,73;UBERON:0001049,2.84e-11,52;UBERON:0005068,2.84e-11,52;UBERON:0006241,2.84e-11,52;UBERON:0007135,2.84e-11,52;UBERON:0001016,3.54e-11,75;UBERON:0000073,1.47e-10,54;UBERON:0003080,2.78e-08,40;UBERON:0002616,3.98e-08,46;UBERON:0000955,8.00e-08,47;UBERON:0006238,8.00e-08,47;UBERON:0010314,8.52e-08,92;UBERON:0002780,1.07e-07,39;UBERON:0001890,1.07e-07,39;UBERON:0006240,1.07e-07,39;UBERON:0002020,6.05e-07,34|phase1_expression=2.88267924788629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0.261199789138935,0,0,0,0.430761996159075,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34717403304412,1.09012578190223,0,0.388859798148567,0.139986421625363,2.87505128729943,0,0,0,0,0,0,6.47412674750713,4.7609188134483,6.97214543856797,0.338844532069132,0.889294796111139,0,0,0,0.599200221036809,1.15265491596466,6.84351441235953,6.88530285491622,6.73039876324422,2.57085885963423,1.10434270475807,4.5321595709533,5.46319184803947,11.9498442259303,0,0,0.307213066512487,4.87979264601717,3.7509933876988,2.08365348222704,0,0.56276261003168,0.30559649555362,2.94628585473668,2.13557521198654,5.03278503728312,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0.985903938436763,1.28326477414318,0,0,0,0,0,0,0,0.29688427812965,0.173485326766136,0,0.230615497256059,0.301445281105245,0.23517741427141,0,0,0,0,0.161766849947409,0,0,0,0,0.41889341362691,0,0,0.599902730993408,0,1.49790639404823,0.915001205637253,11.5602003943835,0.173824320192276,0,1.0389402227978,0.162241263067758,0.712875546952214,0,0,0.210441855886474,2.47228841629137,1.83921683546778,2.16074555766419,1.65775299619287,2.04109497453984,1.40925092313335,1.49922759295566,0.517406741478031,2.37124792226126,4.9167580843633,3.87092473160687,3.06874025398605,1.94633074457919,1.0447564995665,0.411564272815887,0.199034266818493,0,0,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0.196764231747404,0,0,0,0,0,0,0,0,0,0,0.210289948564127,11.7311258112384,0,0,0.639864751605702,0.928946687441754,0.257734922644187,0,0.22237804384487,0.190225626112559,0,0,0,0,0,0,0,0.199141273254367,1.51734320762465,0.685491075658373,1.1270773567308,0.407302655690628,0.387904974335251,0.98190147846446,0.632365371242573,0,0,0.123397163921801,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13694847062291,0.325929952884052,0.339490171550376,0.469380496577004,0.167506257441816,0.238043640886014,0.195133647857799,0.315270288212382,0.664394068946325,0,0,0,0,0,0,0,0,0.481651769963376,0.703270119553219,0,0,0,0,0.430846795465598,0,0.222798674082394,0.849229592366497,0.809621403349789,0.292255857911312,1.18586333383957,0.642642632843614,0.141940085208269,1.24645922567079,1.79175655288934,0.989820737835213,0,0.971122544619926,0.604647113929502,0.188605079755898,0.295301892880773,0,0.775284879504663,0.363533729477506,0,0,0,0,0,1.8006109403131,2.45781499187234,3.64372959553707,1.24138163549592,1.96205699362278,1.31639216481697,1.2178597964584,0,0,0,0.16488625294148,0.484393280087717,0.301564624640779,0,0,0,0.741701208042039,0,0,0.185194527369712,0,0,0,0,0,0,0,1.10717597753397,0.203319467126849,0.648032044930808,0,0.218362563746178,0.134864346384821,0.330613822901344,0,0,0,0,1.04661582230785,0.330916980914195,0.777804753376191,0.1291598234777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| ||
|EntrezGene=71890 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q9D752 | |||
|association_with_transcript=-142bp_to_ENSMUST00000084129_5end | |||
|description=CAGE_peak_6_at_Mad2l2_5end | |||
|id=chr4:147504851..147504881,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.39e-09!23;CL:0000337!1.39e-09!23;CL:0000221!2.67e-09!44;CL:0000133!2.67e-09!44;CL:0002319!5.33e-09!43;CL:0000540!7.74e-09!33;CL:0000047!7.74e-09!33;CL:0000031!7.74e-09!33;CL:0000404!7.74e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.76e-14,23;CL:0000337,1.76e-14,23;CL:0002319,7.99e-11,43;CL:0000540,8.47e-11,33;CL:0000047,8.47e-11,33;CL:0000031,8.47e-11,33;CL:0000404,8.47e-11,33;CL:0000221,2.03e-10,44;CL:0000133,2.03e-10,44;CL:0002609,2.17e-09,6;CL:0000393,3.00e-08,39;CL:0000211,3.00e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.12e-13!73;UBERON:0005743!1.12e-13!73;UBERON:0002346!4.69e-13!71;UBERON:0003075!4.69e-13!71;UBERON:0007284!4.69e-13!71;UBERON:0004121!6.14e-13!102;UBERON:0000924!6.14e-13!102;UBERON:0006601!6.14e-13!102;UBERON:0000073!1.10e-12!75;UBERON:0001016!1.10e-12!75;UBERON:0001049!1.65e-11!52;UBERON:0005068!1.65e-11!52;UBERON:0006241!1.65e-11!52;UBERON:0007135!1.65e-11!52;UBERON:0003056!2.29e-11!49;UBERON:0000033!3.21e-11!63;UBERON:0000955!4.36e-08!50;UBERON:0006238!4.36e-08!50;UBERON:0003080!5.45e-08!40;UBERON:0002616!6.87e-08!49;UBERON:0002780!1.38e-07!39;UBERON:0001890!1.38e-07!39;UBERON:0006240!1.38e-07!39;UBERON:0002020!3.17e-07!34;UBERON:0000153!5.54e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.33e-14,64;UBERON:0003075,2.33e-14,64;UBERON:0007284,2.33e-14,64;UBERON:0010371,2.19e-12,73;UBERON:0003056,2.45e-12,49;UBERON:0004121,4.19e-12,95;UBERON:0000924,4.19e-12,95;UBERON:0006601,4.19e-12,95;UBERON:0001017,9.31e-12,73;UBERON:0001049,2.84e-11,52;UBERON:0005068,2.84e-11,52;UBERON:0006241,2.84e-11,52;UBERON:0007135,2.84e-11,52;UBERON:0001016,3.54e-11,75;UBERON:0000073,1.47e-10,54;UBERON:0003080,2.78e-08,40;UBERON:0002616,3.98e-08,46;UBERON:0000955,8.00e-08,47;UBERON:0006238,8.00e-08,47;UBERON:0010314,8.52e-08,92;UBERON:0002780,1.07e-07,39;UBERON:0001890,1.07e-07,39;UBERON:0006240,1.07e-07,39;UBERON:0002020,6.05e-07,34 | |||
|phase1_expression=2.88267924788629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0.261199789138935,0,0,0,0.430761996159075,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34717403304412,1.09012578190223,0,0.388859798148567,0.139986421625363,2.87505128729943,0,0,0,0,0,0,6.47412674750713,4.7609188134483,6.97214543856797,0.338844532069132,0.889294796111139,0,0,0,0.599200221036809,1.15265491596466,6.84351441235953,6.88530285491622,6.73039876324422,2.57085885963423,1.10434270475807,4.5321595709533,5.46319184803947,11.9498442259303,0,0,0.307213066512487,4.87979264601717,3.7509933876988,2.08365348222704,0,0.56276261003168,0.30559649555362,2.94628585473668,2.13557521198654,5.03278503728312,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0.985903938436763,1.28326477414318,0,0,0,0,0,0,0,0.29688427812965,0.173485326766136,0,0.230615497256059,0.301445281105245,0.23517741427141,0,0,0,0,0.161766849947409,0,0,0,0,0.41889341362691,0,0,0.599902730993408,0,1.49790639404823,0.915001205637253,11.5602003943835,0.173824320192276,0,1.0389402227978,0.162241263067758,0.712875546952214,0,0,0.210441855886474,2.47228841629137,1.83921683546778,2.16074555766419,1.65775299619287,2.04109497453984,1.40925092313335,1.49922759295566,0.517406741478031,2.37124792226126,4.9167580843633,3.87092473160687,3.06874025398605,1.94633074457919,1.0447564995665,0.411564272815887,0.199034266818493,0,0,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0.196764231747404,0,0,0,0,0,0,0,0,0,0,0.210289948564127,11.7311258112384,0,0,0.639864751605702,0.928946687441754,0.257734922644187,0,0.22237804384487,0.190225626112559,0,0,0,0,0,0,0,0.199141273254367,1.51734320762465,0.685491075658373,1.1270773567308,0.407302655690628,0.387904974335251,0.98190147846446,0.632365371242573,0,0,0.123397163921801,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13694847062291,0.325929952884052,0.339490171550376,0.469380496577004,0.167506257441816,0.238043640886014,0.195133647857799,0.315270288212382,0.664394068946325,0,0,0,0,0,0,0,0,0.481651769963376,0.703270119553219,0,0,0,0,0.430846795465598,0,0.222798674082394,0.849229592366497,0.809621403349789,0.292255857911312,1.18586333383957,0.642642632843614,0.141940085208269,1.24645922567079,1.79175655288934,0.989820737835213,0,0.971122544619926,0.604647113929502,0.188605079755898,0.295301892880773,0,0.775284879504663,0.363533729477506,0,0,0,0,0,1.8006109403131,2.45781499187234,3.64372959553707,1.24138163549592,1.96205699362278,1.31639216481697,1.2178597964584,0,0,0,0.16488625294148,0.484393280087717,0.301564624640779,0,0,0,0.741701208042039,0,0,0.185194527369712,0,0,0,0,0,0,0,1.10717597753397,0.203319467126849,0.648032044930808,0,0.218362563746178,0.134864346384821,0.330613822901344,0,0,0,0,1.04661582230785,0.330916980914195,0.777804753376191,0.129159823477731,0.337912250981556,0.352071715937262,0.13020438484395,0.104859344425711,0,0,0,0.608175645870493,0.102710957164827,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0.36630324853453,0,0,0,0.460325236507177,0.572895513439397,0,0.685082519770642,0.755393897389701,0,0,0.453142408984205,0,1.45302286617847,3.19219898720825,3.24393850932855,1.21553358534147,1.46729213839588,1.65459157605013,0.44449345560323,1.44224540067226,0.962757628775446,1.76888048234658,1.01391719956096,0.565879024158229,1.12369808963859,1.79270426733634,0.574354689556133,0.952587382566147,0.579421629724277,1.73618298417335,0.824171801606613,0.294397840268795,0.685738504770831,0.532427418478012,0.476872379894642,1.0174249164263,1.12931256498397,0.930760686808441,1.46342378298218,0.789209134313529,1.08643291076689,2.80571135828869,1.54225523561426,1.77308068276014,0.818462086339379,2.16911577660352,1.92906610981141,3.99696924700713,1.16965804222704,1.07435527024149,0.382576664137687,0,0.231867835620421 | |||
|short_description=p6@Mad2l2 | |||
}} |
Revision as of 04:25, 14 September 2013
Short description: | p6@Mad2l2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Mad2l2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -142bp_to_ENSMUST00000084129_5end |
EntrezGene: | Mad2l2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.76e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.76e-14 | 23 |
neural cell | 7.99e-11 | 43 |
neuron | 8.47e-11 | 33 |
neuronal stem cell | 8.47e-11 | 33 |
neuroblast | 8.47e-11 | 33 |
electrically signaling cell | 8.47e-11 | 33 |
ectodermal cell | 2.03e-10 | 44 |
neurectodermal cell | 2.03e-10 | 44 |
neuron of cerebral cortex | 2.17e-09 | 6 |
electrically responsive cell | 3.00e-08 | 39 |
electrically active cell | 3.00e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.33e-14 | 64 |
neural plate | 2.33e-14 | 64 |
presumptive neural plate | 2.33e-14 | 64 |
ecto-epithelium | 2.19e-12 | 73 |
pre-chordal neural plate | 2.45e-12 | 49 |
ectoderm-derived structure | 4.19e-12 | 95 |
ectoderm | 4.19e-12 | 95 |
presumptive ectoderm | 4.19e-12 | 95 |
central nervous system | 9.31e-12 | 73 |
neural tube | 2.84e-11 | 52 |
neural rod | 2.84e-11 | 52 |
future spinal cord | 2.84e-11 | 52 |
neural keel | 2.84e-11 | 52 |
nervous system | 3.54e-11 | 75 |
regional part of nervous system | 1.47e-10 | 54 |
anterior neural tube | 2.78e-08 | 40 |
regional part of brain | 3.98e-08 | 46 |
brain | 8.00e-08 | 47 |
future brain | 8.00e-08 | 47 |
structure with developmental contribution from neural crest | 8.52e-08 | 92 |
regional part of forebrain | 1.07e-07 | 39 |
forebrain | 1.07e-07 | 39 |
future forebrain | 1.07e-07 | 39 |
gray matter | 6.05e-07 | 34 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.