FFCP PHASE1:Mm9::chr4:97248652..97248671,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18027|HGNC=|MCL_coexpression_id=1761|UniProt=Q02780,Q3UTK6|association_with_transcript=18bp_to_NM_001122952,uc008tty.2_5end|description=CAGE_peak_19_at_Nfia_5end|id=chr4:97248652..97248671,+|ontology_enrichment_celltype=CL:0000221!5.73e-10!44;CL:0000133!5.73e-10!44;CL:0002319!2.67e-09!43;CL:0000117!3.83e-09!23;CL:0000337!3.83e-09!23;CL:0000540!7.00e-07!33;CL:0000047!7.00e-07!33;CL:0000031!7.00e-07!33;CL:0000404!7.00e-07!33|ontology_enrichment_celltype_v019_2=CL:0000221,5.94e-13,44;CL:0000133,5.94e-13,44;CL:0002319,1.76e-11,43;CL:0000120,4.47e-09,3;CL:0000117,2.24e-08,23;CL:0000337,2.24e-08,23;CL:0002453,2.70e-08,8;CL:0002609,6.21e-08,6;CL:0000197,3.61e-07,2;CL:0002491,3.61e-07,2;CL:0000098,3.61e-07,2;CL:0002321,6.67e-07,70;CL:0000540,8.31e-07,33;CL:0000047,8.31e-07,33;CL:0000031,8.31e-07,33;CL:0000404,8.31e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.06e-16!63;UBERON:0007811!3.16e-15!86;UBERON:0000153!5.25e-15!94;UBERON:0004121!2.80e-14!102;UBERON:0000924!2.80e-14!102;UBERON:0006601!2.80e-14!102;UBERON:0003056!6.43e-14!49;UBERON:0001017!1.93e-13!73;UBERON:0005743!1.93e-13!73;UBERON:0000073!1.23e-12!75;UBERON:0001016!1.23e-12!75;UBERON:0002346!4.15e-12!71;UBERON:0003075!4.15e-12!71;UBERON:0007284!4.15e-12!71;UBERON:0000020!1.91e-11!12;UBERON:0001032!1.91e-11!12;UBERON:0004456!1.91e-11!12;UBERON:0001049!3.51e-10!52;UBERON:0005068!3.51e-10!52;UBERON:0006241!3.51e-10!52;UBERON:0007135!3.51e-10!52;UBERON:0000970!1.28e-09!9;UBERON:0000019!1.28e-09!9;UBERON:0000047!1.28e-09!9;UBERON:0004088!1.28e-09!9;UBERON:0002104!1.28e-09!9;UBERON:0001456!1.28e-09!9;UBERON:0003072!1.28e-09!9;UBERON:0003071!1.28e-09!9;UBERON:0004128!1.28e-09!9;UBERON:0000955!4.96e-09!50;UBERON:0006238!4.96e-09!50;UBERON:0005085!5.94e-09!13;UBERON:0002616!1.68e-08!49;UBERON:0001444!2.18e-08!11;UBERON:0002020!5.24e-08!34;UBERON:0003080!1.35e-07!40;UBERON:0002780!2.54e-07!39;UBERON:0001890!2.54e-07!39;UBERON:0006240!2.54e-07!39;UBERON:0002791!9.34e-07!29;UBERON:0003528!9.34e-07!29;UBERON:0001893!9.34e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0000020,3.30e-29,12;UBERON:0001032,3.30e-29,12;UBERON:0004456,3.30e-29,12;UBERON:0000033,8.77e-27,13;UBERON:0005085,8.77e-27,13;UBERON:0000970,2.00e-26,9;UBERON:0000019,2.00e-26,9;UBERON:0000047,2.00e-26,9;UBERON:0010312,2.00e-26,9;UBERON:0004088,2.00e-26,9;UBERON:0002104,2.00e-26,9;UBERON:0001456,2.00e-26,9;UBERON:0003072,2.00e-26,9;UBERON:0004128,2.00e-26,9;UBERON:0003071,2.00e-26,9;UBERON:0001444,2.59e-21,11;UBERON:0004121,1.42e-15,95;UBERON:0000924,1.42e-15,95;UBERON:0006601,1.42e-15,95;UBERON:0003056,3.71e-12,49;UBERON:0010371,7.19e-12,73;UBERON:0002346,5.92e-11,64;UBERON:0003075,5.92e-11,64;UBERON:0007284,5.92e-11,64;UBERON:0010314,1.61e-08,92;UBERON:0007811,3.28e-08,36;UBERON:0004766,3.61e-07,2;UBERON:0008193,3.61e-07,2;UBERON:0005913,3.61e-07,2;UBERON:0011158,3.61e-07,2;UBERON:0005744,3.61e-07,2;UBERON:0003457,3.61e-07,2;UBERON:0008001,3.61e-07,2;UBERON:0007497,3.61e-07,2;UBERON:0009955,3.61e-07,2;UBERON:0003067,3.61e-07,2;UBERON:0002546,3.61e-07,2;UBERON:0007914,3.61e-07,2;UBERON:0005253,3.61e-07,2;UBERON:0002227,3.61e-07,2;UBERON:0001846,3.61e-07,2;UBERON:0004339,3.61e-07,2;UBERON:0002105,3.61e-07,2;UBERON:0001678,3.61e-07,2;UBERON:0003128,3.61e-07,2;UBERON:0001694,3.61e-07,2;UBERON:0004681,3.61e-07,2;UBERON:0001839,3.61e-07,2;UBERON:0001690,3.61e-07,2;UBERON:0001844,3.61e-07,2;UBERON:0001849,3.61e-07,2;UBERON:0002499,3.61e-07,2;UBERON:0001855,3.61e-07,2;UBERON:0011137,3.61e-07,2;UBERON:0001703,3.61e-07,2;UBERON:0010323,3.61e-07,2;UBERON:0003129,3.61e-07,2;UBERON:0003069,3.61e-07,2;UBERON:0003051,3.61e-07,2;UBERON:0004637,3.61e-07,2;UBERON:0004761,3.61e-07,2;UBERON:0010113,3.61e-07,2;UBERON:0009123,3.61e-07,2;UBERON:0010351,3.61e-07,2;UBERON:0009617,3.61e-07,2;UBERON:0005641,3.61e-07,2;UBERON:0010349,3.61e-07,2|phase1_expression=6.56610273129655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815093828268,1.75748946187577,0.777719596297134,0.279972843250725,4.31257693094915,0,0,0,0,0,0,2.02316460859598,2.11596391708813,1.90149421051854,0,0,0,0,0,1.19840044207362,1.53687322128622,3.7328260431052,2.02508907497536,2.3135745748652,0,0.441737081903227,0.857435594504678,0.958454710182364,1.83843757322004,0,0.127687338085188,0.307213066512487,0.923204014111357,0.823388792421687,1.56274011167028,0,0,0.15279824777681,0.589257170947335,0.427115042397309,1.1183966749518,0,0,0,0,0,0,0,0,0,0,0,0,2.81686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0.220841518460394,0,0,0,0.628340120440365,0,0,0,0,0.299581278809645,0.915001205637253,0.628271760564322,0.173824320192276,0.511430914660661,0.62336413367868,0.486723789203273,0,0,0,2.94618598241064,1.56144531555244,2.29902104433473,2.88099407688559,5.72678307775717,6.73561341598146,8.45550553880009,6.55912071918102,7.50239775143145,0.215567992932842,0.378212160335639,0,0,0.556094498451196,0,0.205782136407943,0,0,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| ||
|EntrezGene=18027 | |||
|HGNC= | |||
|MCL_coexpression_id=1761 | |||
|UniProt=Q02780,Q3UTK6 | |||
|association_with_transcript=18bp_to_NM_001122952,uc008tty.2_5end | |||
|description=CAGE_peak_19_at_Nfia_5end | |||
|id=chr4:97248652..97248671,+ | |||
|ontology_enrichment_celltype=CL:0000221!5.73e-10!44;CL:0000133!5.73e-10!44;CL:0002319!2.67e-09!43;CL:0000117!3.83e-09!23;CL:0000337!3.83e-09!23;CL:0000540!7.00e-07!33;CL:0000047!7.00e-07!33;CL:0000031!7.00e-07!33;CL:0000404!7.00e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.94e-13,44;CL:0000133,5.94e-13,44;CL:0002319,1.76e-11,43;CL:0000120,4.47e-09,3;CL:0000117,2.24e-08,23;CL:0000337,2.24e-08,23;CL:0002453,2.70e-08,8;CL:0002609,6.21e-08,6;CL:0000197,3.61e-07,2;CL:0002491,3.61e-07,2;CL:0000098,3.61e-07,2;CL:0002321,6.67e-07,70;CL:0000540,8.31e-07,33;CL:0000047,8.31e-07,33;CL:0000031,8.31e-07,33;CL:0000404,8.31e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.06e-16!63;UBERON:0007811!3.16e-15!86;UBERON:0000153!5.25e-15!94;UBERON:0004121!2.80e-14!102;UBERON:0000924!2.80e-14!102;UBERON:0006601!2.80e-14!102;UBERON:0003056!6.43e-14!49;UBERON:0001017!1.93e-13!73;UBERON:0005743!1.93e-13!73;UBERON:0000073!1.23e-12!75;UBERON:0001016!1.23e-12!75;UBERON:0002346!4.15e-12!71;UBERON:0003075!4.15e-12!71;UBERON:0007284!4.15e-12!71;UBERON:0000020!1.91e-11!12;UBERON:0001032!1.91e-11!12;UBERON:0004456!1.91e-11!12;UBERON:0001049!3.51e-10!52;UBERON:0005068!3.51e-10!52;UBERON:0006241!3.51e-10!52;UBERON:0007135!3.51e-10!52;UBERON:0000970!1.28e-09!9;UBERON:0000019!1.28e-09!9;UBERON:0000047!1.28e-09!9;UBERON:0004088!1.28e-09!9;UBERON:0002104!1.28e-09!9;UBERON:0001456!1.28e-09!9;UBERON:0003072!1.28e-09!9;UBERON:0003071!1.28e-09!9;UBERON:0004128!1.28e-09!9;UBERON:0000955!4.96e-09!50;UBERON:0006238!4.96e-09!50;UBERON:0005085!5.94e-09!13;UBERON:0002616!1.68e-08!49;UBERON:0001444!2.18e-08!11;UBERON:0002020!5.24e-08!34;UBERON:0003080!1.35e-07!40;UBERON:0002780!2.54e-07!39;UBERON:0001890!2.54e-07!39;UBERON:0006240!2.54e-07!39;UBERON:0002791!9.34e-07!29;UBERON:0003528!9.34e-07!29;UBERON:0001893!9.34e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000020,3.30e-29,12;UBERON:0001032,3.30e-29,12;UBERON:0004456,3.30e-29,12;UBERON:0000033,8.77e-27,13;UBERON:0005085,8.77e-27,13;UBERON:0000970,2.00e-26,9;UBERON:0000019,2.00e-26,9;UBERON:0000047,2.00e-26,9;UBERON:0010312,2.00e-26,9;UBERON:0004088,2.00e-26,9;UBERON:0002104,2.00e-26,9;UBERON:0001456,2.00e-26,9;UBERON:0003072,2.00e-26,9;UBERON:0004128,2.00e-26,9;UBERON:0003071,2.00e-26,9;UBERON:0001444,2.59e-21,11;UBERON:0004121,1.42e-15,95;UBERON:0000924,1.42e-15,95;UBERON:0006601,1.42e-15,95;UBERON:0003056,3.71e-12,49;UBERON:0010371,7.19e-12,73;UBERON:0002346,5.92e-11,64;UBERON:0003075,5.92e-11,64;UBERON:0007284,5.92e-11,64;UBERON:0010314,1.61e-08,92;UBERON:0007811,3.28e-08,36;UBERON:0004766,3.61e-07,2;UBERON:0008193,3.61e-07,2;UBERON:0005913,3.61e-07,2;UBERON:0011158,3.61e-07,2;UBERON:0005744,3.61e-07,2;UBERON:0003457,3.61e-07,2;UBERON:0008001,3.61e-07,2;UBERON:0007497,3.61e-07,2;UBERON:0009955,3.61e-07,2;UBERON:0003067,3.61e-07,2;UBERON:0002546,3.61e-07,2;UBERON:0007914,3.61e-07,2;UBERON:0005253,3.61e-07,2;UBERON:0002227,3.61e-07,2;UBERON:0001846,3.61e-07,2;UBERON:0004339,3.61e-07,2;UBERON:0002105,3.61e-07,2;UBERON:0001678,3.61e-07,2;UBERON:0003128,3.61e-07,2;UBERON:0001694,3.61e-07,2;UBERON:0004681,3.61e-07,2;UBERON:0001839,3.61e-07,2;UBERON:0001690,3.61e-07,2;UBERON:0001844,3.61e-07,2;UBERON:0001849,3.61e-07,2;UBERON:0002499,3.61e-07,2;UBERON:0001855,3.61e-07,2;UBERON:0011137,3.61e-07,2;UBERON:0001703,3.61e-07,2;UBERON:0010323,3.61e-07,2;UBERON:0003129,3.61e-07,2;UBERON:0003069,3.61e-07,2;UBERON:0003051,3.61e-07,2;UBERON:0004637,3.61e-07,2;UBERON:0004761,3.61e-07,2;UBERON:0010113,3.61e-07,2;UBERON:0009123,3.61e-07,2;UBERON:0010351,3.61e-07,2;UBERON:0009617,3.61e-07,2;UBERON:0005641,3.61e-07,2;UBERON:0010349,3.61e-07,2 | |||
|phase1_expression=6.56610273129655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815093828268,1.75748946187577,0.777719596297134,0.279972843250725,4.31257693094915,0,0,0,0,0,0,2.02316460859598,2.11596391708813,1.90149421051854,0,0,0,0,0,1.19840044207362,1.53687322128622,3.7328260431052,2.02508907497536,2.3135745748652,0,0.441737081903227,0.857435594504678,0.958454710182364,1.83843757322004,0,0.127687338085188,0.307213066512487,0.923204014111357,0.823388792421687,1.56274011167028,0,0,0.15279824777681,0.589257170947335,0.427115042397309,1.1183966749518,0,0,0,0,0,0,0,0,0,0,0,0,2.81686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0.220841518460394,0,0,0,0.628340120440365,0,0,0,0,0.299581278809645,0.915001205637253,0.628271760564322,0.173824320192276,0.511430914660661,0.62336413367868,0.486723789203273,0,0,0,2.94618598241064,1.56144531555244,2.29902104433473,2.88099407688559,5.72678307775717,6.73561341598146,8.45550553880009,6.55912071918102,7.50239775143145,0.215567992932842,0.378212160335639,0,0,0.556094498451196,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,2.57261530948211,0,0,0,0.464473343720877,0.128867461322093,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.937693492737625,0,0.252470927204373,0,0,0,0,0.668396022247182,0,0,0.292255857911312,0,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.900305470156551,0,0.428674070063185,0,0,0.329098041204242,0,0,0,0,0,0,0.0603129249281559,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0.104859344425711,0,0,0,0.405450430580328,0.513554785824136,0.25984164595559,0.179026695667481,0.39736270956253,0.360586348559907,0.147689527174577,0,0.228620419965,0.201652370273681,0.292373642219257,0.0962118416403295,0.233753804363138,0.226730383615211,0,0,0,0,0,0,0,0,0,0.460325236507177,0.572895513439397,0,0.685082519770642,0,0,0,0,0,0.31136204275253,2.39414924040619,1.19513524027894,0.486213434136588,0.419226325255965,0.367687016900028,1.55572709461131,0.618105171716683,0.320919209591815,0.252697211763798,0.760437899670719,0.943131706930381,0.561849044819294,0.89635213366817,0.631790158511746,1.42888107384922,0.231768651889711,0.578727661391115,0.824171801606613,0.147198920134397,0.685738504770831,0.887379030796687,0.476872379894642,0.581385666529314,0.564656282491984,0.423073039458382,0.73171189149109,1.57841826862706,0.814824683075171,1.12228454331548,0.237270036248348,0.394017929502254,0.409231043169689,0.464810523557898,0.385813221962283,0.499621155875892,0.701794825336225,0.429742108096597,0.191288332068843,0.220591419119515,0.463735671240843 | |||
|short_description=p19@Nfia | |||
}} |
Revision as of 05:38, 14 September 2013
Short description: | p19@Nfia |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_19_at_Nfia_5end |
Coexpression cluster: | MCL_coexpression_mm9:1761 |
Association with transcript: | 18bp_to_NM_001122952, uc008tty.2_5end |
EntrezGene: | Nfia |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.94e-13 | 44 |
neurectodermal cell | 5.94e-13 | 44 |
neural cell | 1.76e-11 | 43 |
granule cell | 4.47e-09 | 3 |
CNS neuron (sensu Vertebrata) | 2.24e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.24e-08 | 23 |
oligodendrocyte precursor cell | 2.70e-08 | 8 |
neuron of cerebral cortex | 6.21e-08 | 6 |
receptor cell | 3.61e-07 | 2 |
auditory epithelial cell | 3.61e-07 | 2 |
sensory epithelial cell | 3.61e-07 | 2 |
embryonic cell | 6.67e-07 | 70 |
neuron | 8.31e-07 | 33 |
neuronal stem cell | 8.31e-07 | 33 |
neuroblast | 8.31e-07 | 33 |
electrically signaling cell | 8.31e-07 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.