FFCP PHASE1:Hg19::chr9:126774091..126774098,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9355|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6594|TSSclassifier=W|UniProt=P50458,B3KNJ5|association_with_transcript=202bp_to_ENST00000373615,NM_004789,uc004boe.1,uc010mwi.1_5end|coexpression_cluster_id=C361|description=CAGE_peak_4_at_LHX2_5end|id=chr9:126774091..126774098,+|ontology_enrichment_celltype=CL:0002319!4.91e-11!25;CL:0002605!3.71e-09!3;CL:0002586!7.26e-09!3;CL:0000047!1.07e-08!8;CL:0000133!1.43e-08!59;CL:0000064!4.94e-08!3;CL:0005012!4.94e-08!3;CL:0000067!4.94e-08!3;CL:0002304!4.94e-08!3|ontology_enrichment_celltype_v019=CL:0002605;7.64e-20;3!CL:0002586;3.41e-19;3!CL:0000149;1.55e-14;4!CL:0000047;4.26e-14;2!CL:0002319;4.57e-14;25!CL:0000540;3.23e-10;6!CL:0000404;3.23e-10;6!CL:0000128;8.73e-09;7!CL:0000126;8.73e-09;7!CL:0000127;8.73e-09;7|ontology_enrichment_celltype_v019_2=CL:0000047,4.33e-20,8;CL:0002605,6.97e-20,3;CL:0002586,3.53e-19,3;CL:0000149,1.59e-14,4;CL:0002319,4.42e-14,25;CL:0000540,3.19e-10,6;CL:0000031,3.19e-10,6;CL:0000404,3.19e-10,6;CL:0000128,8.40e-09,7;CL:0000126,8.40e-09,7;CL:0000127,8.40e-09,7;CL:0002453,8.40e-09,7;CL:0000133,5.98e-07,59|ontology_enrichment_development_v019=CL:0000031;3.23e-10;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!1.74e-63!61;UBERON:0002780!4.03e-56!41;UBERON:0001890!4.03e-56!41;UBERON:0006240!4.03e-56!41;UBERON:0003080!1.40e-54!42;UBERON:0001893!2.31e-53!34;UBERON:0001869!3.14e-53!32;UBERON:0000073!8.46e-52!94;UBERON:0001016!8.46e-52!94;UBERON:0005743!1.87e-51!86;UBERON:0002791!3.37e-51!33;UBERON:0000956!2.53e-46!25;UBERON:0000203!2.53e-46!25;UBERON:0003075!4.20e-46!86;UBERON:0007284!4.20e-46!86;UBERON:0002020!5.84e-46!34;UBERON:0003528!5.84e-46!34;UBERON:0001017!4.65e-44!82;UBERON:0002346!1.67e-43!90;UBERON:0002619!5.89e-39!22;UBERON:0002616!1.23e-38!59;UBERON:0001049!6.95e-38!57;UBERON:0005068!6.95e-38!57;UBERON:0006241!6.95e-38!57;UBERON:0007135!6.95e-38!57;UBERON:0000955!8.55e-38!69;UBERON:0006238!8.55e-38!69;UBERON:0004121!2.00e-35!169;UBERON:0001950!1.40e-34!20;UBERON:0000924!2.92e-34!173;UBERON:0006601!2.92e-34!173;UBERON:0000033!5.12e-33!123;UBERON:0000153!6.86e-31!129;UBERON:0007811!6.86e-31!129;UBERON:0007625!6.11e-17!11;UBERON:0001871!5.25e-15!7;UBERON:0007023!5.31e-13!115;UBERON:0000970!1.09e-12!20;UBERON:0000349!1.28e-12!5;UBERON:0001872!2.52e-12!5;UBERON:0002104!5.78e-12!21;UBERON:0000019!3.17e-11!19;UBERON:0000047!3.17e-11!19;UBERON:0004088!3.17e-11!19;UBERON:0003072!3.17e-11!19;UBERON:0003071!3.17e-11!19;UBERON:0004128!3.17e-11!19;UBERON:0000020!1.05e-10!23;UBERON:0000200!2.26e-10!6;UBERON:0000369!3.33e-10!4;UBERON:0002435!3.33e-10!4;UBERON:0000204!3.33e-10!4;UBERON:0010082!3.33e-10!4;UBERON:0001032!3.74e-10!24;UBERON:0004456!3.74e-10!24;UBERON:0000064!3.80e-10!219;UBERON:0001456!6.02e-10!21;UBERON:0000488!7.85e-10!4;UBERON:0002420!1.75e-09!9;UBERON:0007245!1.75e-09!9;UBERON:0010009!1.75e-09!9;UBERON:0010011!1.75e-09!9;UBERON:0000454!1.75e-09!9;UBERON:0000966!7.07e-09!5;UBERON:0005388!7.07e-09!5;UBERON:0001802!7.07e-09!5;UBERON:0001781!7.26e-09!3;UBERON:0001782!7.26e-09!3;UBERON:0005424!7.26e-09!3;UBERON:0002021!1.74e-08!5;UBERON:0002771!3.60e-08!3;UBERON:0005383!4.27e-08!3;UBERON:0005382!4.27e-08!3;UBERON:0001778!4.94e-08!3;UBERON:0001775!4.94e-08!3;UBERON:0000483!1.44e-07!309;UBERON:0000119!2.20e-07!312;UBERON:0000025!7.05e-07!194;UBERON:0000475!7.91e-07!365|ontology_enrichment_uberon_v019=UBERON:0000956;5.62e-49;25!UBERON:0000203;5.62e-49;25!UBERON:0001869;2.12e-40;32!UBERON:0002791;3.33e-38;32!UBERON:0003528;1.27e-36;34!UBERON:0002020;1.27e-36;34!UBERON:0001893;4.25e-36;34!UBERON:0002619;7.65e-35;22!UBERON:0001950;3.33e-32;20!UBERON:0002780;5.72e-26;41!UBERON:0001890;5.72e-26;41!UBERON:0001871;3.08e-21;6!UBERON:0000966;8.32e-20;5!UBERON:0005388;8.32e-20;5!UBERON:0001802;8.32e-20;5!UBERON:0001781;3.41e-19;3!UBERON:0001782;3.41e-19;3!UBERON:0000073;8.71e-16;53!UBERON:0002616;8.71e-16;53!UBERON:0007625;7.54e-14;11!UBERON:0002771;8.45e-13;2!UBERON:0000955;2.77e-12;68!UBERON:0001872;3.23e-11;5!UBERON:0000019;4.46e-11;19!UBERON:0000047;4.46e-11;19!UBERON:0004088;4.46e-11;19!UBERON:0010230;4.46e-11;19!UBERON:0001017;1.21e-10;75!UBERON:0000970;1.70e-10;20!UBERON:0002104;5.71e-10;21!UBERON:0001456;5.71e-10;21!UBERON:0000200;1.97e-09;6!UBERON:0000020;4.70e-09;23!UBERON:0001016;7.71e-09;83!UBERON:0001032;1.18e-08;24!UBERON:0004456;1.18e-08;24!UBERON:0002581;3.10e-07;1!UBERON:0002022;3.10e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0000956,9.88e-49,25;UBERON:0000203,9.88e-49,25;UBERON:0002791,3.79e-43,32;UBERON:0001869,3.79e-43,32;UBERON:0003056,2.18e-42,61;UBERON:0003528,1.70e-40,34;UBERON:0002020,1.70e-40,34;UBERON:0001893,1.70e-40,34;UBERON:0002619,1.32e-34,22;UBERON:0002780,3.33e-33,41;UBERON:0001890,3.33e-33,41;UBERON:0003080,3.33e-33,41;UBERON:0006240,3.33e-33,41;UBERON:0001950,5.67e-32,20;UBERON:0001017,3.97e-31,81;UBERON:0003075,1.55e-30,82;UBERON:0007284,1.55e-30,8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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9355 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6594 | |||
|TSSclassifier=W | |||
|UniProt=P50458,B3KNJ5 | |||
|association_with_transcript=202bp_to_ENST00000373615,NM_004789,uc004boe.1,uc010mwi.1_5end | |||
|coexpression_cluster_id=C361 | |||
|description=CAGE_peak_4_at_LHX2_5end | |||
|id=chr9:126774091..126774098,+ | |||
|ontology_enrichment_celltype=CL:0002319!4.91e-11!25;CL:0002605!3.71e-09!3;CL:0002586!7.26e-09!3;CL:0000047!1.07e-08!8;CL:0000133!1.43e-08!59;CL:0000064!4.94e-08!3;CL:0005012!4.94e-08!3;CL:0000067!4.94e-08!3;CL:0002304!4.94e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002605;7.64e-20;3!CL:0002586;3.41e-19;3!CL:0000149;1.55e-14;4!CL:0000047;4.26e-14;2!CL:0002319;4.57e-14;25!CL:0000540;3.23e-10;6!CL:0000404;3.23e-10;6!CL:0000128;8.73e-09;7!CL:0000126;8.73e-09;7!CL:0000127;8.73e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.33e-20,8;CL:0002605,6.97e-20,3;CL:0002586,3.53e-19,3;CL:0000149,1.59e-14,4;CL:0002319,4.42e-14,25;CL:0000540,3.19e-10,6;CL:0000031,3.19e-10,6;CL:0000404,3.19e-10,6;CL:0000128,8.40e-09,7;CL:0000126,8.40e-09,7;CL:0000127,8.40e-09,7;CL:0002453,8.40e-09,7;CL:0000133,5.98e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;3.23e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p4@LHX2 | |||
}} |
Revision as of 07:22, 14 September 2013
Short description: | p4@LHX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LHX2_5end |
Coexpression cluster: | C361_Neural_Astrocyte_Neurons_spinal_Chondrocyte_Fibroblast_sacrococcigeal |
Association with transcript: | 202bp_to_ENST00000373615, NM_004789, uc004boe.1, uc010mwi.1_5end |
EntrezGene: | LHX2 |
HGNC: | 6594 |
UniProt: | P50458B3KNJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.33e-20 | 8 |
astrocyte of the cerebral cortex | 6.97e-20 | 3 |
retinal pigment epithelial cell | 3.53e-19 | 3 |
visual pigment cell | 1.59e-14 | 4 |
neural cell | 4.42e-14 | 25 |
neuron | 3.19e-10 | 6 |
neuroblast | 3.19e-10 | 6 |
electrically signaling cell | 3.19e-10 | 6 |
oligodendrocyte | 8.40e-09 | 7 |
macroglial cell | 8.40e-09 | 7 |
astrocyte | 8.40e-09 | 7 |
oligodendrocyte precursor cell | 8.40e-09 | 7 |
neurectodermal cell | 5.98e-07 | 59 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.