FFCP PHASE1:Hg19::chrX:101771645..101771712,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=11013,286527|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28612,30744|TSSclassifier=S|UniProt=P0CG34,P0CG35|association_with_transcript=0bp_to_ENST00000289373,NM_021992,uc004eje.2_5end|coexpression_cluster_id=C4711|description=CAGE_peak_1_at_TMSB15A_5end,CAGE_peak_1_at_TMSB15B_5end|id=chrX:101771645..101771712,-|ontology_enrichment_celltype=CL:0000055!6.78e-19!180;CL:0000133!2.90e-14!59;CL:0002319!1.08e-10!25;CL:0000333!1.55e-10!41;CL:0000393!4.85e-10!60;CL:0000211!4.85e-10!60;CL:0000221!1.91e-09!71;CL:0000183!9.86e-09!59;CL:0000222!6.51e-08!119;CL:0000680!9.63e-08!57;CL:0000056!9.63e-08!57;CL:0000355!9.63e-08!57;CL:0002321!2.60e-07!248;CL:0000187!3.82e-07!54;CL:0000047!4.74e-07!8;CL:0000220!7.94e-07!246;CL:1000449!8.08e-07!16|ontology_enrichment_celltype_v019=CL:0002319;1.39e-13;25!CL:0002321;2.24e-09;15!CL:1000449;4.29e-08;15!CL:0000095;1.71e-07;17!CL:1000507;5.23e-07;10!CL:1000494;5.23e-07;10!CL:0000540;7.92e-07;6!CL:0000404;7.92e-07;6|ontology_enrichment_celltype_v019_2=CL:0000133,3.86e-16,59;CL:0002319,1.15e-13,25;CL:0000333,7.83e-13,41;CL:0000221,6.72e-11,72;CL:0000393,3.06e-09,61;CL:0000211,3.06e-09,61;CL:0000047,2.43e-08,8;CL:0002321,2.98e-08,250;CL:1000449,4.56e-08,15;CL:0000095,1.41e-07,17;CL:0000123,1.41e-07,17;CL:1000507,5.66e-07,10;CL:1000494,5.66e-07,10;CL:0000540,8.05e-07,6;CL:0000031,8.05e-07,6;CL:0000404,8.05e-07,6;CL:0000680,8.51e-07,58;CL:0000056,8.51e-07,58;CL:0000355,8.51e-07,58|ontology_enrichment_development_v019=CL:0000133;1.61e-08;59!CL:0000031;7.92e-07;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!7.51e-10!312;UBERON:0000483!4.54e-09!309;UBERON:0000914!1.47e-08!83;UBERON:0002329!1.47e-08!83;UBERON:0003077!1.47e-08!83;UBERON:0003059!1.47e-08!83;UBERON:0007282!1.47e-08!83;UBERON:0009618!1.47e-08!83;UBERON:0007285!1.47e-08!83;UBERON:0005256!2.73e-08!143;UBERON:0004290!6.31e-08!70;UBERON:0001134!1.98e-07!61;UBERON:0002036!1.98e-07!61;UBERON:0003082!1.98e-07!61;UBERON:0000475!1.99e-07!365;UBERON:0000924!4.07e-07!173;UBERON:0006601!4.07e-07!173;UBERON:0002385!7.08e-07!63;UBERON:0001015!7.08e-07!63;UBERON:0000383!7.08e-07!63;UBERON:0004211!8.08e-07!16;UBERON:0001285!8.08e-07!16;UBERON:0007684!8.08e-07!16;UBERON:0003220!8.08e-07!16;UBERON:0004208!8.08e-07!16;UBERON:0000922!8.40e-07!612|ontology_enrichment_uberon_v019=UBERON:0006555;4.29e-08;15!UBERON:0004819;4.29e-08;15!UBERON:0001285;4.29e-08;15!UBERON:0007684;4.29e-08;15!UBERON:0002104;3.78e-07;21!UBERON:0000970;4.62e-07;20!UBERON:0004211;5.23e-07;10!UBERON:0009773;5.23e-07;10!UBERON:0001231;5.23e-07;10!UBERON:0004810;5.23e-07;10!UBERON:0000019;8.13e-07;19!UBERON:0000047;8.13e-07;19!UBERON:0004088;8.13e-07;19!UBERON:0010230;8.13e-07;19|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.11e-09,78;UBERON:0004211,4.56e-08,15;UBERON:0009773,4.56e-08,15;UBERON:0001231,4.56e-08,15;UBERON:0001285,4.56e-08,15;UBERON:0007684,4.56e-08,15;UBERON:0004208,4.56e-08,15;UBERON:0000119,1.23e-07,309;UBERON:0002329,1.76e-07,71;UBERON:0003059,1.76e-07,71;UBERON:0007282,1.76e-07,71;UBERON:0004290,1.76e-07,71;UBERON:0009618,1.76e-07,71;UBERON:0007524,1.97e-07,73;UBERON:0006555,3.04e-07,16;UBERON:0004819,3.04e-07,16;UBERON:0003077,3.36e-07,72;UBERON:0007285,3.36e-07,72;UBERON:0000970,3.94e-07,21;UBERON:0002104,3.94e-07,21;UBERON:0003104,4.31e-07,160;UBERON:0009142,4.31e-07,160;UBERON:0004810,5.66e-07,10;UBERON:0000483,6.97e-07,306;UBERON:0000019,7.85e-07,20;UBERON:0000047,7.85e-07,20;UBERON:0010312,7.85e-07,20;UBERON:0004088,7.85e-07,20;UBERON:0010230,7.85e-07,20;UBERON:0003072,7.85e-07,20;UBERON:0004128,7.85e-07,20;UBERON:0003071,7.85e-07,20|phase1_expression=0,0.214100523890983,0,0,0,0,2.53299878168311,0,0,6.88055022204225,1.39560233594486,9.61142037372758,8.70431028153897,11.6340371782444,5.30235801164665,4.03395087871065,3.61616716814386,2.92124036154949,2.43966399395253,48.8790600564848,19.9920677419368,17.866919124251,69.5553448728468,39.1460855708449,46.7018619292666,0,0.0821005894499457,0,0,0,0.154816123316076,0,0,0,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,3.16060901730092,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0.579606171470105,0,0,0,0.226618685395132,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,6.03630773733273,3.32442660793179,0.722878304769133,0.50133791063589,0.434539556882471,0,0,45.1876426044244,19.5121869767056,19.499322423874,0.982343066232845,0,0,0,0,0,0,0,0,0.596287222100115,0,3.12426451446835,1.13061588384802,0.419499436209906,0,0.835979866147242,0.516833518338658,0.71153252537342,0,0.402829317109147,0,0.24406205754817,1.10298924103761,1.62028389576352,1.3394959242612,1.57170560838319,0.900891843866578,4.5994991239765,0,3.11442964681692,0,0,0,0,2.65924074495618,0,0,2.12801029319014,2.24271040056923,1.06748995729705,1.72667283892012,3.1121103539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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=11013,286527 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28612,30744 | |||
|TSSclassifier=S | |||
|UniProt=P0CG34,P0CG35 | |||
|association_with_transcript=0bp_to_ENST00000289373,NM_021992,uc004eje.2_5end | |||
|coexpression_cluster_id=C4711 | |||
|description=CAGE_peak_1_at_TMSB15A_5end,CAGE_peak_1_at_TMSB15B_5end | |||
|id=chrX:101771645..101771712,- | |||
|ontology_enrichment_celltype=CL:0000055!6.78e-19!180;CL:0000133!2.90e-14!59;CL:0002319!1.08e-10!25;CL:0000333!1.55e-10!41;CL:0000393!4.85e-10!60;CL:0000211!4.85e-10!60;CL:0000221!1.91e-09!71;CL:0000183!9.86e-09!59;CL:0000222!6.51e-08!119;CL:0000680!9.63e-08!57;CL:0000056!9.63e-08!57;CL:0000355!9.63e-08!57;CL:0002321!2.60e-07!248;CL:0000187!3.82e-07!54;CL:0000047!4.74e-07!8;CL:0000220!7.94e-07!246;CL:1000449!8.08e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.39e-13;25!CL:0002321;2.24e-09;15!CL:1000449;4.29e-08;15!CL:0000095;1.71e-07;17!CL:1000507;5.23e-07;10!CL:1000494;5.23e-07;10!CL:0000540;7.92e-07;6!CL:0000404;7.92e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,3.86e-16,59;CL:0002319,1.15e-13,25;CL:0000333,7.83e-13,41;CL:0000221,6.72e-11,72;CL:0000393,3.06e-09,61;CL:0000211,3.06e-09,61;CL:0000047,2.43e-08,8;CL:0002321,2.98e-08,250;CL:1000449,4.56e-08,15;CL:0000095,1.41e-07,17;CL:0000123,1.41e-07,17;CL:1000507,5.66e-07,10;CL:1000494,5.66e-07,10;CL:0000540,8.05e-07,6;CL:0000031,8.05e-07,6;CL:0000404,8.05e-07,6;CL:0000680,8.51e-07,58;CL:0000056,8.51e-07,58;CL:0000355,8.51e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000133;1.61e-08;59!CL:0000031;7.92e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!7.51e-10!312;UBERON:0000483!4.54e-09!309;UBERON:0000914!1.47e-08!83;UBERON:0002329!1.47e-08!83;UBERON:0003077!1.47e-08!83;UBERON:0003059!1.47e-08!83;UBERON:0007282!1.47e-08!83;UBERON:0009618!1.47e-08!83;UBERON:0007285!1.47e-08!83;UBERON:0005256!2.73e-08!143;UBERON:0004290!6.31e-08!70;UBERON:0001134!1.98e-07!61;UBERON:0002036!1.98e-07!61;UBERON:0003082!1.98e-07!61;UBERON:0000475!1.99e-07!365;UBERON:0000924!4.07e-07!173;UBERON:0006601!4.07e-07!173;UBERON:0002385!7.08e-07!63;UBERON:0001015!7.08e-07!63;UBERON:0000383!7.08e-07!63;UBERON:0004211!8.08e-07!16;UBERON:0001285!8.08e-07!16;UBERON:0007684!8.08e-07!16;UBERON:0003220!8.08e-07!16;UBERON:0004208!8.08e-07!16;UBERON:0000922!8.40e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.29e-08;15!UBERON:0004819;4.29e-08;15!UBERON:0001285;4.29e-08;15!UBERON:0007684;4.29e-08;15!UBERON:0002104;3.78e-07;21!UBERON:0000970;4.62e-07;20!UBERON:0004211;5.23e-07;10!UBERON:0009773;5.23e-07;10!UBERON:0001231;5.23e-07;10!UBERON:0004810;5.23e-07;10!UBERON:0000019;8.13e-07;19!UBERON:0000047;8.13e-07;19!UBERON:0004088;8.13e-07;19!UBERON:0010230;8.13e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.11e-09,78;UBERON:0004211,4.56e-08,15;UBERON:0009773,4.56e-08,15;UBERON:0001231,4.56e-08,15;UBERON:0001285,4.56e-08,15;UBERON:0007684,4.56e-08,15;UBERON:0004208,4.56e-08,15;UBERON:0000119,1.23e-07,309;UBERON:0002329,1.76e-07,71;UBERON:0003059,1.76e-07,71;UBERON:0007282,1.76e-07,71;UBERON:0004290,1.76e-07,71;UBERON:0009618,1.76e-07,71;UBERON:0007524,1.97e-07,73;UBERON:0006555,3.04e-07,16;UBERON:0004819,3.04e-07,16;UBERON:0003077,3.36e-07,72;UBERON:0007285,3.36e-07,72;UBERON:0000970,3.94e-07,21;UBERON:0002104,3.94e-07,21;UBERON:0003104,4.31e-07,160;UBERON:0009142,4.31e-07,160;UBERON:0004810,5.66e-07,10;UBERON:0000483,6.97e-07,306;UBERON:0000019,7.85e-07,20;UBERON:0000047,7.85e-07,20;UBERON:0010312,7.85e-07,20;UBERON:0004088,7.85e-07,20;UBERON:0010230,7.85e-07,20;UBERON:0003072,7.85e-07,20;UBERON:0004128,7.85e-07,20;UBERON:0003071,7.85e-07,20 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,2.53299878168311,0,0,6.88055022204225,1.39560233594486,9.61142037372758,8.70431028153897,11.6340371782444,5.30235801164665,4.03395087871065,3.61616716814386,2.92124036154949,2.43966399395253,48.8790600564848,19.9920677419368,17.866919124251,69.5553448728468,39.1460855708449,46.7018619292666,0,0.0821005894499457,0,0,0,0.154816123316076,0,0,0,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,3.16060901730092,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0.579606171470105,0,0,0,0.226618685395132,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,6.03630773733273,3.32442660793179,0.722878304769133,0.50133791063589,0.434539556882471,0,0,45.1876426044244,19.5121869767056,19.499322423874,0.982343066232845,0,0,0,0,0,0,0,0,0.596287222100115,0,3.12426451446835,1.13061588384802,0.419499436209906,0,0.835979866147242,0.516833518338658,0.71153252537342,0,0.402829317109147,0,0.24406205754817,1.10298924103761,1.62028389576352,1.3394959242612,1.57170560838319,0.900891843866578,4.5994991239765,0,3.11442964681692,0,0,0,0,2.65924074495618,0,0,2.12801029319014,2.24271040056923,1.06748995729705,1.72667283892012,3.11211035399766,1.21239604862719,3.59616186849609,2.72443369760877,1.72852777344,4.92075006850973,0,0,0,16.2059608128396,10.0361225508242,15.4495887372473,0.816616685019573,22.8471830199888,0,0,0,0,0,28.9538116000994,10.384837149373,0.554128230968366,2.19488810440419,0.919463387397059,0.600952235626387,5.44474479168101,2.69084453533293,0.427114777637135,0.423863802319124,0.900273288253207,3.09157587715317,0,1.30281799432113,0.843881661206331,1.85130309806277,0.504867548488229,0.552299391853796,0.969876340912871,0,2.72030665214629,18.9907863387746,0,0,0,11.9534232007003,23.0601796879384,26.6084129171197,21.8724826082432,11.8590799911545,54.3816265022987,3.12899064659632,2.57296375277154,2.76269842704961,0,0,0.118306800039844,0,0,0,0,0,0,0,0.38474715694639,0.738155454624648,14.0241773803446,6.173610169971,8.82052268313252,0,0,0,0.441463099414651,0,12.5244501517924,0,0,0.100528972411631,0.185176890317059,2.6064664424826,2.07986957055916,10.1031939417691,50.5456565691335,0.939269553886573,0.144366447761074,0,0.190254152234598,1.58040879591855,1.71697232418975,0,0,0,0,0,0.141775097242386,0.358234090811393,0.290633938513962,0,0,0.176096868026452,0,0,0.25248486685276,7.1752620550151,2.29193055334967,0,1.71072446022705,2.77634230298973,2.10240140490742,2.85826432630578,14.0163855431701,9.15516144549888,15.5477165940414,0,0,0.845302752556,1.32969058292435,2.08014873822732,19.0333456953985,14.1849132023278,13.8539533088372,1.00084595560703,0.542621605391443,16.4648067356154,1.62868092146868,2.13235169245527,9.50342247520115,0.602878754119172,0,0.499864955910285,0,0,0,0.479249710983165,2.29723871668228,8.5582143024431,1.88215698667853,2.26023954805422,4.47652408099739,0,0.591092280605782,0.215627574859517,0,19.5652860651297,48.15174592732,134.552253423319,127.312361654105,162.036442919903,0,0,0,2.33113834266366,7.00238729483548,2.44138521329762,0.623912584592421,0.356857977594324,0.315404830067869,0.234282829985426,0,0,1.03473071292505,21.255219153134,3.13427586520895,2.60650843404249,10.7690636604507,8.5785855952714,0,0,0.106727557803444,4.85004114314015,3.32870879020994,10.5836602665388,0,0.306923946576125,0,0.128139149255701,1.02341449813341,0,0,0.925258162815933,2.13074070375753,0.98552587216571,1.03850885836724,1.39452454151951,0,0,0,1.14814448164607,1.0925470080403,0.131124414959424,7.670393419426,12.9385766335417,14.1182958451834,14.6139224653261,8.65523356921581,6.8240030442538,2.2112181685947,6.26156156696204,1.54227252690289,13.8182683147365,9.03041592938736,4.07802036872061,4.15538004464362,12.3131115097198,0,0.522870902049801,31.0304651390831,15.4166883478862,2.27764876265012,1.33953315142039,39.8327171959794,61.5520869407586,2.87132768998086,0,1.6068392984416,3.77015801339276,9.39696564399331,7.67518373630648,11.8539452336696,9.02330056893499,9.86113518616754,12.5283142301668,5.43095417445098,0,0,0,0,0.464845549297286,0,1.3940745403212,0,0,0.869932992075073,0.37064843820784,0.572499546967965,13.7698596663077,11.0732798651554,0,11.2595028176987,1.28381696410176,0.636406495851874,0.78494864019923,12.7709444884153,9.33425901102586,11.5456154298773,0.606547444719948,0,0.421258456238981,9.26504104270222,0.243713489631284,0,4.23149725364756,0.848432591722276,1.13008116620243,0.551365343546124,1.99031692572366,0,6.94530641120025,11.1502107847928,0.608731130888112,3.40805847909725,8.169172473435,29.1125044974225,4.81420300964294,2.1400263088875,13.4809204346827,0.211107635297664,0.329294892959902,20.1120782095829,10.1481068871045,0.288666338176536,0,0,1.50630081242847,0,0,0.443430153536676,0,1.01489521846434,0,1.13929437434833,1.19115887728894,0.822724546172388,0,1.08006287447623,0.79312517629427,1.06824071127473,0,0.490080431962063,4.27347302789153,0,0,3.82623054549174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| |||
|short_description=p1@TMSB15A,p1@TMSB15B | |||
}} |
Revision as of 10:10, 14 September 2013
Short description: | p1@TMSB15A, p1@TMSB15B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TMSB15A_5end, CAGE_peak_1_at_TMSB15B_5end |
Coexpression cluster: | C4711_Neurons_duodenum_occipital_parietal_temporal_brain_neuroblastoma |
Association with transcript: | 0bp_to_ENST00000289373, NM_021992, uc004eje.2_5end |
EntrezGene: | 11013,286527 |
HGNC: | 30744&submit=Submit 28612, 30744 |
UniProt: | P0CG34P0CG35 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 3.86e-16 | 59 |
neural cell | 1.15e-13 | 25 |
migratory neural crest cell | 7.83e-13 | 41 |
ectodermal cell | 6.72e-11 | 72 |
electrically responsive cell | 3.06e-09 | 61 |
electrically active cell | 3.06e-09 | 61 |
neuronal stem cell | 2.43e-08 | 8 |
embryonic cell | 2.98e-08 | 250 |
epithelial cell of nephron | 4.56e-08 | 15 |
neuron associated cell | 1.41e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 1.41e-07 | 17 |
kidney tubule cell | 5.66e-07 | 10 |
nephron tubule epithelial cell | 5.66e-07 | 10 |
neuron | 8.05e-07 | 6 |
neuroblast | 8.05e-07 | 6 |
electrically signaling cell | 8.05e-07 | 6 |
muscle precursor cell | 8.51e-07 | 58 |
myoblast | 8.51e-07 | 58 |
multi-potent skeletal muscle stem cell | 8.51e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.11e-09 | 78 |
nephron epithelium | 4.56e-08 | 15 |
renal tubule | 4.56e-08 | 15 |
nephron tubule | 4.56e-08 | 15 |
nephron | 4.56e-08 | 15 |
uriniferous tubule | 4.56e-08 | 15 |
nephrogenic mesenchyme | 4.56e-08 | 15 |
cell layer | 1.23e-07 | 309 |
somite | 1.76e-07 | 71 |
presomitic mesoderm | 1.76e-07 | 71 |
presumptive segmental plate | 1.76e-07 | 71 |
dermomyotome | 1.76e-07 | 71 |
trunk paraxial mesoderm | 1.76e-07 | 71 |
dense mesenchyme tissue | 1.97e-07 | 73 |
excretory tube | 3.04e-07 | 16 |
kidney epithelium | 3.04e-07 | 16 |
paraxial mesoderm | 3.36e-07 | 72 |
presumptive paraxial mesoderm | 3.36e-07 | 72 |
eye | 3.94e-07 | 21 |
visual system | 3.94e-07 | 21 |
mesenchyme | 4.31e-07 | 160 |
entire embryonic mesenchyme | 4.31e-07 | 160 |
nephron tubule epithelium | 5.66e-07 | 10 |
epithelium | 6.97e-07 | 306 |
camera-type eye | 7.85e-07 | 20 |
simple eye | 7.85e-07 | 20 |
immature eye | 7.85e-07 | 20 |
ocular region | 7.85e-07 | 20 |
eyeball of camera-type eye | 7.85e-07 | 20 |
optic cup | 7.85e-07 | 20 |
optic vesicle | 7.85e-07 | 20 |
eye primordium | 7.85e-07 | 20 |
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