FFCP PHASE1:Mm9::chr6:97262017..97262032,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=232288|HGNC=|UniProt=Q8C0E8|association_with_transcript=341bp_to_ENSMUST00000143698,ENSMUST00000167470,uc009dat.1_5end|description=CAGE_peak_5_at_Frmd4b_5end|id=chr6:97262017..97262032,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000791,2.26e-08,9;CL:0000789,2.26e-08,9;CL:0002420,2.26e-08,9;CL:0002419,2.26e-08,9;CL:0000790,2.26e-08,9;CL:0000624,7.63e-08,8;CL:0000066,4.02e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!2.00e-16!130;UBERON:0000925!2.00e-16!130;UBERON:0006595!2.00e-16!130;UBERON:0001007!3.84e-16!128;UBERON:0001555!3.84e-16!128;UBERON:0007026!3.84e-16!128;UBERON:0004921!3.81e-15!126;UBERON:0004185!3.81e-15!126;UBERON:0005911!2.73e-11!69;UBERON:0000077!2.98e-11!97;UBERON:0001041!4.07e-10!92;UBERON:0009854!7.19e-10!23;UBERON:0009856!7.19e-10!23;UBERON:0003929!1.07e-09!55;UBERON:0002365!2.24e-09!25;UBERON:0002330!2.24e-09!25;UBERON:0002107!2.73e-09!22;UBERON:0007499!2.73e-09!22;UBERON:0006925!2.73e-09!22;UBERON:0009497!2.73e-09!22;UBERON:0000015!2.73e-09!22;UBERON:0002423!2.73e-09!22;UBERON:0006235!2.73e-09!22;UBERON:0008835!2.73e-09!22;UBERON:0003894!2.73e-09!22;UBERON:0004161!2.73e-09!22;UBERON:0008836!2.73e-09!22;UBERON:0002530!2.59e-08!65;UBERON:0002368!2.33e-07!60;UBERON:0005057!8.20e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0001007,3.16e-18,116;UBERON:0001555,3.16e-18,116;UBERON:0007026,3.16e-18,116;UBERON:0004119,1.40e-17,118;UBERON:0000925,1.40e-17,118;UBERON:0006595,1.40e-17,118;UBERON:0004921,7.33e-17,114;UBERON:0009854,1.17e-13,23;UBERON:0009856,1.17e-13,23;UBERON:0002365,1.74e-13,25;UBERON:0002330,1.74e-13,25;UBERON:0002107,9.09e-13,22;UBERON:0007499,9.09e-13,22;UBERON:0006925,9.09e-13,22;UBERON:0009497,9.09e-13,22;UBERON:0000015,9.09e-13,22;UBERON:0002423,9.09e-13,22;UBERON:0006235,9.09e-13,22;UBERON:0008835,9.09e-13,22;UBERON:0003894,9.09e-13,22;UBERON:0004161,9.09e-13,22;UBERON:0008836,9.09e-13,22;UBERON:0001041,3.38e-11,80;UBERON:0003929,2.07e-09,55;UBERON:0005911,3.80e-09,69|phase1_expression=0.320297694209588,4.88565570695105,5.91499011206397,0.90739263392049,1.50268718983904,4.02910252588535,5.37309073369709,8.00564605337773,25.9051248759067,22.2361300005894,3.76679530096111,2.39316476986009,3.76641605848653,2.88487327982691,0,0.404950534779652,0,0.315462165358238,0.137114433605739,0,0.340173160604279,0,0,5.43974237497583,5.96464130774642,2.8711598205751,7.32295393470427,6.03319451520489,1.71021077510736,1.00812051903972,5.54326276638262,0,0,0,0,0,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0,0.194429899074283,0.139986421625363,0,0.167782606057736,7.25362142011344,2.68875039313971,0,0,0,0,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244981598429908,0,0,0,0,0.153606533256243,0,0,0,0,0,0,0,0,0,1.13589289999776,0.0755715601067855,2.31891590961342,12.9063581547208,79.5566460438068,24.8263468153396,31.8390444549358,14.3368603871147,5.75822122540183,0,0,0,0.563373679106722,0,0,0,5.84525810730278,3.54703811665138,4.54972000513305,10.1623652949963,2.33044095282455,0.742210695324124,0.520455980298408,0,0.461230994512117,0.150722640552623,0.823120949949934,0.125666591329675,1.48316980640624,1.15679485535929,0,0,0.220841518460394,0.484875253135222,7.45567044872489,0,0,2.04365644166873,0.599075622529601,0.599902730993408,0.127070227073065,0,0,0.125654352112864,0.173824320192276,0,0,0,0.305518091550949,0.248813941220186,0,1.05220927943237,0.130120442962704,0,0.180062129805349,0.452114453507145,0.136072998302656,0,0.0937017245597288,0.258703370739016,0,0.378212160335639,0.351902248327898,0,0.556094498451196,6.61679116392116,2.67516777330327,0,0,0,0,0,0,0,0.473489471170421,0,0,0,0,0.233530684734339,0.16455984991348,0,0.324275238183423,0.146199987425332,0.439100230582101,0.805238512562231,0.841159794256509,0.205809224758569,3.63460661282178,0.793351699990633,0,0.232236671860439,0,0.201683524623343,0.22237804384487,0.760902504450237,0,2.14108641141214,0.502670417600539,1.79060824837036,1.9496408711912,2.69645822596266,1.72910439899755,1.7922714592893,0,0.114248512609729,0,0.203651327845314,0.193952487167626,0.280543279561274,0.252946148497029,0.885660887877613,0.941992367048249,0.246794327843601,13.3403682189217,0.166845105716094,0,0.224862112384854,1.21716072833102,0.72353147925725,2.03700681425136,3.45235364940973,6.64754429777645,4.11842119782122,11.5014565221884,8.55924179637558,4.99260276983297,9.85057623993736,16.6839594575378,16.8855232477179,1.66277871149944,0,0.325929952884052,0.678980343100753,0.234690248288502,1.84256883185997,1.90434912708811,2.92700471786698,1.10344600874334,0.8858587585951,0.956728611944923,0.655453258862952,0.518054945597687,1.3018415272336,0,0,0,3.58717770196152,0,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0,1.13552068166615,0,0.162886959353576,1.15479086080775,0,0,0,0,0,0.614870295887855,2.06742634534577,0.727067458955011,0.356497378384721,0.316036757935816,0,1.03135543248187,0.340439605753788,0.18006109403131,0.129358683782755,0.428674070063185,0.35468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| ||
|EntrezGene=232288 | |||
|HGNC= | |||
|UniProt=Q8C0E8 | |||
|association_with_transcript=341bp_to_ENSMUST00000143698,ENSMUST00000167470,uc009dat.1_5end | |||
|description=CAGE_peak_5_at_Frmd4b_5end | |||
|id=chr6:97262017..97262032,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.26e-08,9;CL:0000789,2.26e-08,9;CL:0002420,2.26e-08,9;CL:0002419,2.26e-08,9;CL:0000790,2.26e-08,9;CL:0000624,7.63e-08,8;CL:0000066,4.02e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.00e-16!130;UBERON:0000925!2.00e-16!130;UBERON:0006595!2.00e-16!130;UBERON:0001007!3.84e-16!128;UBERON:0001555!3.84e-16!128;UBERON:0007026!3.84e-16!128;UBERON:0004921!3.81e-15!126;UBERON:0004185!3.81e-15!126;UBERON:0005911!2.73e-11!69;UBERON:0000077!2.98e-11!97;UBERON:0001041!4.07e-10!92;UBERON:0009854!7.19e-10!23;UBERON:0009856!7.19e-10!23;UBERON:0003929!1.07e-09!55;UBERON:0002365!2.24e-09!25;UBERON:0002330!2.24e-09!25;UBERON:0002107!2.73e-09!22;UBERON:0007499!2.73e-09!22;UBERON:0006925!2.73e-09!22;UBERON:0009497!2.73e-09!22;UBERON:0000015!2.73e-09!22;UBERON:0002423!2.73e-09!22;UBERON:0006235!2.73e-09!22;UBERON:0008835!2.73e-09!22;UBERON:0003894!2.73e-09!22;UBERON:0004161!2.73e-09!22;UBERON:0008836!2.73e-09!22;UBERON:0002530!2.59e-08!65;UBERON:0002368!2.33e-07!60;UBERON:0005057!8.20e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,3.16e-18,116;UBERON:0001555,3.16e-18,116;UBERON:0007026,3.16e-18,116;UBERON:0004119,1.40e-17,118;UBERON:0000925,1.40e-17,118;UBERON:0006595,1.40e-17,118;UBERON:0004921,7.33e-17,114;UBERON:0009854,1.17e-13,23;UBERON:0009856,1.17e-13,23;UBERON:0002365,1.74e-13,25;UBERON:0002330,1.74e-13,25;UBERON:0002107,9.09e-13,22;UBERON:0007499,9.09e-13,22;UBERON:0006925,9.09e-13,22;UBERON:0009497,9.09e-13,22;UBERON:0000015,9.09e-13,22;UBERON:0002423,9.09e-13,22;UBERON:0006235,9.09e-13,22;UBERON:0008835,9.09e-13,22;UBERON:0003894,9.09e-13,22;UBERON:0004161,9.09e-13,22;UBERON:0008836,9.09e-13,22;UBERON:0001041,3.38e-11,80;UBERON:0003929,2.07e-09,55;UBERON:0005911,3.80e-09,69 | |||
|phase1_expression=0.320297694209588,4.88565570695105,5.91499011206397,0.90739263392049,1.50268718983904,4.02910252588535,5.37309073369709,8.00564605337773,25.9051248759067,22.2361300005894,3.76679530096111,2.39316476986009,3.76641605848653,2.88487327982691,0,0.404950534779652,0,0.315462165358238,0.137114433605739,0,0.340173160604279,0,0,5.43974237497583,5.96464130774642,2.8711598205751,7.32295393470427,6.03319451520489,1.71021077510736,1.00812051903972,5.54326276638262,0,0,0,0,0,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0,0.194429899074283,0.139986421625363,0,0.167782606057736,7.25362142011344,2.68875039313971,0,0,0,0,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244981598429908,0,0,0,0,0.153606533256243,0,0,0,0,0,0,0,0,0,1.13589289999776,0.0755715601067855,2.31891590961342,12.9063581547208,79.5566460438068,24.8263468153396,31.8390444549358,14.3368603871147,5.75822122540183,0,0,0,0.563373679106722,0,0,0,5.84525810730278,3.54703811665138,4.54972000513305,10.1623652949963,2.33044095282455,0.742210695324124,0.520455980298408,0,0.461230994512117,0.150722640552623,0.823120949949934,0.125666591329675,1.48316980640624,1.15679485535929,0,0,0.220841518460394,0.484875253135222,7.45567044872489,0,0,2.04365644166873,0.599075622529601,0.599902730993408,0.127070227073065,0,0,0.125654352112864,0.173824320192276,0,0,0,0.305518091550949,0.248813941220186,0,1.05220927943237,0.130120442962704,0,0.180062129805349,0.452114453507145,0.136072998302656,0,0.0937017245597288,0.258703370739016,0,0.378212160335639,0.351902248327898,0,0.556094498451196,6.61679116392116,2.67516777330327,0,0,0,0,0,0,0,0.473489471170421,0,0,0,0,0.233530684734339,0.16455984991348,0,0.324275238183423,0.146199987425332,0.439100230582101,0.805238512562231,0.841159794256509,0.205809224758569,3.63460661282178,0.793351699990633,0,0.232236671860439,0,0.201683524623343,0.22237804384487,0.760902504450237,0,2.14108641141214,0.502670417600539,1.79060824837036,1.9496408711912,2.69645822596266,1.72910439899755,1.7922714592893,0,0.114248512609729,0,0.203651327845314,0.193952487167626,0.280543279561274,0.252946148497029,0.885660887877613,0.941992367048249,0.246794327843601,13.3403682189217,0.166845105716094,0,0.224862112384854,1.21716072833102,0.72353147925725,2.03700681425136,3.45235364940973,6.64754429777645,4.11842119782122,11.5014565221884,8.55924179637558,4.99260276983297,9.85057623993736,16.6839594575378,16.8855232477179,1.66277871149944,0,0.325929952884052,0.678980343100753,0.234690248288502,1.84256883185997,1.90434912708811,2.92700471786698,1.10344600874334,0.8858587585951,0.956728611944923,0.655453258862952,0.518054945597687,1.3018415272336,0,0,0,3.58717770196152,0,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0,1.13552068166615,0,0.162886959353576,1.15479086080775,0,0,0,0,0,0.614870295887855,2.06742634534577,0.727067458955011,0.356497378384721,0.316036757935816,0,1.03135543248187,0.340439605753788,0.18006109403131,0.129358683782755,0.428674070063185,0.354680467284547,0.178368817602071,0.329098041204242,0.304464949114599,0.469343416127421,0.847328283455281,3.08739757276947,19.1268053412117,8.23468576149118,6.81536051688161,8.11731939221328,10.9974402829191,1.1659233465194,0,0,0.206386867963223,0,0,0.136694227721025,0.228778173206523,6.28920190977265,4.19854356970974,4.00779924032829,4.77335309007557,0,0,0.216010681643603,2.09088296014469,3.27543845619266,5.25970950900801,6.4469695465762,5.75863072364865,4.79575401179634,9.32008969630389,0,0.448549638131936,0.165458490457098,0,0,0,0.117357238645754,0.13020438484395,0,0,0,0.632022241256357,0.608175645870493,0.205421914329655,0.649604114888975,0.179026695667481,0.596044064343795,0.721172697119813,0,0.908698049533329,0.990688486514998,0.201652370273681,0.584747284438515,0.577271049841977,0.701261413089414,14.2840141677583,0,0,0,0.772758376128762,1.31377732815827,1.09890974560359,5.35920947697665,2.00628841614145,0,0,0,0.171853182343688,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0.170733605754134,0.486213434136588,0.419226325255965,0.551530525350042,0.888986911206461,0.206035057238894,0.320919209591815,0.505394423527595,0.25347929989024,0.754505365544305,0.280924522409647,0.704276676453562,0.804096565378586,0.476293691283074,0.579421629724277,0.38581844092741,0.412085900803307,0.883193520806384,0.685738504770831,1.06485483695602,0.476872379894642,1.30811774969096,0.752875043322645,0.676916863133412,0.914639864363863,0.526139422875686,0.407412341537585,2.24456908663095,0.355905054372522,0.788035859004508,0.818462086339379,0.929621047115796,1.73615949883027,1.74867404556562,1.40358965067245,2.14871054048298,1.72159498861959,0,0.231867835620421 | |||
|short_description=p5@Frmd4b | |||
}} |
Revision as of 11:03, 14 September 2013
Short description: | p5@Frmd4b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Frmd4b_5end |
Coexpression cluster: | NA |
Association with transcript: | 341bp_to_ENSMUST00000143698, ENSMUST00000167470, uc009dat.1_5end |
EntrezGene: | Frmd4b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.26e-08 | 9 |
alpha-beta T cell | 2.26e-08 | 9 |
immature T cell | 2.26e-08 | 9 |
mature T cell | 2.26e-08 | 9 |
immature alpha-beta T cell | 2.26e-08 | 9 |
CD4-positive, alpha-beta T cell | 7.63e-08 | 8 |
epithelial cell | 4.02e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
digestive system | 3.16e-18 | 116 |
digestive tract | 3.16e-18 | 116 |
primitive gut | 3.16e-18 | 116 |
endoderm-derived structure | 1.40e-17 | 118 |
endoderm | 1.40e-17 | 118 |
presumptive endoderm | 1.40e-17 | 118 |
subdivision of digestive tract | 7.33e-17 | 114 |
digestive tract diverticulum | 1.17e-13 | 23 |
sac | 1.17e-13 | 23 |
exocrine gland | 1.74e-13 | 25 |
exocrine system | 1.74e-13 | 25 |
liver | 9.09e-13 | 22 |
epithelial sac | 9.09e-13 | 22 |
digestive gland | 9.09e-13 | 22 |
epithelium of foregut-midgut junction | 9.09e-13 | 22 |
anatomical boundary | 9.09e-13 | 22 |
hepatobiliary system | 9.09e-13 | 22 |
foregut-midgut junction | 9.09e-13 | 22 |
hepatic diverticulum | 9.09e-13 | 22 |
liver primordium | 9.09e-13 | 22 |
septum transversum | 9.09e-13 | 22 |
liver bud | 9.09e-13 | 22 |
foregut | 3.38e-11 | 80 |
gut epithelium | 2.07e-09 | 55 |
endo-epithelium | 3.80e-09 | 69 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.