FFCP PHASE1:Mm9::chr9:110235844..110235893,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=235623|HGNC=|UniProt=Q6GQT6|association_with_transcript=0bp_to_ENSMUST00000098350_5end|description=CAGE_peak_2_at_Scap_5end|id=chr9:110235844..110235893,+|ontology_enrichment_celltype=CL:0000221!5.60e-13!44;CL:0000133!5.60e-13!44;CL:0002319!5.90e-13!43;CL:0000055!7.67e-13!50;CL:0000117!6.05e-11!23;CL:0000337!6.05e-11!23;CL:0002321!2.22e-10!70;CL:0000220!2.22e-10!70;CL:0000393!1.53e-09!39;CL:0000211!1.53e-09!39;CL:0000540!8.70e-09!33;CL:0000047!8.70e-09!33;CL:0000031!8.70e-09!33;CL:0000404!8.70e-09!33;CL:0000723!1.73e-08!91;CL:0000048!1.73e-08!91;CL:0000548!1.24e-07!115;CL:0000004!1.24e-07!115;CL:0000255!1.24e-07!115;CL:0000034!1.75e-07!97|ontology_enrichment_celltype_v019_2=CL:0000221,5.59e-13,44;CL:0000133,5.59e-13,44;CL:0002319,5.89e-13,43;CL:0000117,6.04e-11,23;CL:0000337,6.04e-11,23;CL:0002321,2.13e-10,70;CL:0000393,1.53e-09,39;CL:0000211,1.53e-09,39;CL:0000540,8.70e-09,33;CL:0000047,8.70e-09,33;CL:0000031,8.70e-09,33;CL:0000404,8.70e-09,33;CL:0000723,1.69e-08,91;CL:0000048,1.69e-08,91;CL:0000034,1.74e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.40e-18!102;UBERON:0000924!1.40e-18!102;UBERON:0006601!1.40e-18!102;UBERON:0000073!2.00e-18!75;UBERON:0001016!2.00e-18!75;UBERON:0001017!1.44e-17!73;UBERON:0005743!1.44e-17!73;UBERON:0001049!8.15e-15!52;UBERON:0005068!8.15e-15!52;UBERON:0006241!8.15e-15!52;UBERON:0007135!8.15e-15!52;UBERON:0002346!1.50e-13!71;UBERON:0003075!1.50e-13!71;UBERON:0007284!1.50e-13!71;UBERON:0000955!3.83e-13!50;UBERON:0006238!3.83e-13!50;UBERON:0002616!6.74e-13!49;UBERON:0002020!1.35e-12!34;UBERON:0000033!4.18e-11!63;UBERON:0007811!1.84e-10!86;UBERON:0002791!1.20e-09!29;UBERON:0003528!1.20e-09!29;UBERON:0001893!1.20e-09!29;UBERON:0003080!1.24e-09!40;UBERON:0002780!2.37e-09!39;UBERON:0001890!2.37e-09!39;UBERON:0006240!2.37e-09!39;UBERON:0003056!6.03e-08!49;UBERON:0000153!8.92e-08!94|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.00e-18,75;UBERON:0004121,1.30e-17,95;UBERON:0000924,1.30e-17,95;UBERON:0006601,1.30e-17,95;UBERON:0001017,1.44e-17,73;UBERON:0000073,7.25e-16,54;UBERON:0001049,8.14e-15,52;UBERON:0005068,8.14e-15,52;UBERON:0006241,8.14e-15,52;UBERON:0007135,8.14e-15,52;UBERON:0010371,1.21e-13,73;UBERON:0002346,8.11e-13,64;UBERON:0003075,8.11e-13,64;UBERON:0007284,8.11e-13,64;UBERON:0002020,1.35e-12,34;UBERON:0000955,8.87e-12,47;UBERON:0006238,8.87e-12,47;UBERON:0002616,1.54e-11,46;UBERON:0003528,1.20e-09,29;UBERON:0002791,1.20e-09,29;UBERON:0001893,1.20e-09,29;UBERON:0003080,1.24e-09,40;UBERON:0002780,2.37e-09,39;UBERON:0001890,2.37e-09,39;UBERON:0006240,2.37e-09,39;UBERON:0003056,6.02e-08,49;UBERON:0010314,8.21e-08,92|phase1_expression=4.96461426024861,2.44282785347553,2.72999543633722,2.11724947914781,3.00537437967808,4.70061961353291,2.56973904655078,4.9066862907799,4.646027831005,3.7450324211519,5.47897498321616,5.98291192465023,4.28001824828014,5.85716696207283,3.33109761815663,1.82227740650843,2.09868563438444,5.0473946457318,5.21034847701807,4.2438965179803,6.54833334163237,5.56029326724958,5.22399578277871,2.07990149631429,1.83527424853736,2.8711598205751,3.01533397311352,1.29282739611533,3.23039813075836,2.26827116783938,3.10422714917427,4.44521471421742,6.1506478758457,15.8481681015439,4.04392267651784,4.65457007003779,3.26670970019791,0.837063261473815,0,1.57057123192139,0.588231488031014,2.04913645487534,0.971020706062307,4.53228544712078,4.76471576731718,7.34187008646726,7.82391344348039,9.3750817243592,10.3252505885202,6.61061656852564,3.91961980551015,7.18762821824858,5.87239121202077,2.17608642603403,6.38578218370682,3.60163210450326,4.87106847895886,7.73508138416164,9.3065571995415,4.23192783417626,5.70448263155561,14.2314703469035,10.6715375533337,13.0485459005803,1.97773272513395,10.6572017241915,19.1744070731779,21.5162250980071,8.50254820929517,6.88530285491622,8.83364837675805,15.996455126613,11.4851641294839,4.77714116938321,6.61333750025831,7.35375029288017,5.50579404996943,10.5980490610706,9.5236050618871,6.85808696197008,9.97215315266265,4.16730696445408,13.1216009530649,9.00420176050688,11.9182633265912,10.0173719061047,10.1083893367363,10.0655700745662,6.20954785332109,7.10372665003784,4.63783181922684,1.72084775396277,9.51959867190851,19.9690180905992,8.4470934268197,4.92829575807069,4.91555470461132,4.4311883870295,4.1565760736459,5.3000936176551,4.64783285263046,3.84979432242953,2.54805239706646,0,4.5463118612355,2.53359865475099,3.53867111510348,6.05174562511018,2.58937883647172,6.97678053604676,5.20455980298408,1.52232739156071,6.22661842591358,3.3158980921577,6.11461277105665,8.92232798440696,7.66304399976559,3.32578520915797,0.884610551949874,2.75003644910596,3.75430581382669,1.45462575940567,1.86391761218122,5.5628351432194,9.42510180660548,4.59822699375465,2.99537811264801,1.79970819298022,2.92261522268049,5.84183493678809,5.03250663100489,10.3036568732549,6.43149984711423,8.95004100656157,4.57133698031032,6.00292673350703,3.66621709861139,3.483395177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| ||
|EntrezGene=235623 | |||
|HGNC= | |||
|UniProt=Q6GQT6 | |||
|association_with_transcript=0bp_to_ENSMUST00000098350_5end | |||
|description=CAGE_peak_2_at_Scap_5end | |||
|id=chr9:110235844..110235893,+ | |||
|ontology_enrichment_celltype=CL:0000221!5.60e-13!44;CL:0000133!5.60e-13!44;CL:0002319!5.90e-13!43;CL:0000055!7.67e-13!50;CL:0000117!6.05e-11!23;CL:0000337!6.05e-11!23;CL:0002321!2.22e-10!70;CL:0000220!2.22e-10!70;CL:0000393!1.53e-09!39;CL:0000211!1.53e-09!39;CL:0000540!8.70e-09!33;CL:0000047!8.70e-09!33;CL:0000031!8.70e-09!33;CL:0000404!8.70e-09!33;CL:0000723!1.73e-08!91;CL:0000048!1.73e-08!91;CL:0000548!1.24e-07!115;CL:0000004!1.24e-07!115;CL:0000255!1.24e-07!115;CL:0000034!1.75e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.59e-13,44;CL:0000133,5.59e-13,44;CL:0002319,5.89e-13,43;CL:0000117,6.04e-11,23;CL:0000337,6.04e-11,23;CL:0002321,2.13e-10,70;CL:0000393,1.53e-09,39;CL:0000211,1.53e-09,39;CL:0000540,8.70e-09,33;CL:0000047,8.70e-09,33;CL:0000031,8.70e-09,33;CL:0000404,8.70e-09,33;CL:0000723,1.69e-08,91;CL:0000048,1.69e-08,91;CL:0000034,1.74e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.40e-18!102;UBERON:0000924!1.40e-18!102;UBERON:0006601!1.40e-18!102;UBERON:0000073!2.00e-18!75;UBERON:0001016!2.00e-18!75;UBERON:0001017!1.44e-17!73;UBERON:0005743!1.44e-17!73;UBERON:0001049!8.15e-15!52;UBERON:0005068!8.15e-15!52;UBERON:0006241!8.15e-15!52;UBERON:0007135!8.15e-15!52;UBERON:0002346!1.50e-13!71;UBERON:0003075!1.50e-13!71;UBERON:0007284!1.50e-13!71;UBERON:0000955!3.83e-13!50;UBERON:0006238!3.83e-13!50;UBERON:0002616!6.74e-13!49;UBERON:0002020!1.35e-12!34;UBERON:0000033!4.18e-11!63;UBERON:0007811!1.84e-10!86;UBERON:0002791!1.20e-09!29;UBERON:0003528!1.20e-09!29;UBERON:0001893!1.20e-09!29;UBERON:0003080!1.24e-09!40;UBERON:0002780!2.37e-09!39;UBERON:0001890!2.37e-09!39;UBERON:0006240!2.37e-09!39;UBERON:0003056!6.03e-08!49;UBERON:0000153!8.92e-08!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.00e-18,75;UBERON:0004121,1.30e-17,95;UBERON:0000924,1.30e-17,95;UBERON:0006601,1.30e-17,95;UBERON:0001017,1.44e-17,73;UBERON:0000073,7.25e-16,54;UBERON:0001049,8.14e-15,52;UBERON:0005068,8.14e-15,52;UBERON:0006241,8.14e-15,52;UBERON:0007135,8.14e-15,52;UBERON:0010371,1.21e-13,73;UBERON:0002346,8.11e-13,64;UBERON:0003075,8.11e-13,64;UBERON:0007284,8.11e-13,64;UBERON:0002020,1.35e-12,34;UBERON:0000955,8.87e-12,47;UBERON:0006238,8.87e-12,47;UBERON:0002616,1.54e-11,46;UBERON:0003528,1.20e-09,29;UBERON:0002791,1.20e-09,29;UBERON:0001893,1.20e-09,29;UBERON:0003080,1.24e-09,40;UBERON:0002780,2.37e-09,39;UBERON:0001890,2.37e-09,39;UBERON:0006240,2.37e-09,39;UBERON:0003056,6.02e-08,49;UBERON:0010314,8.21e-08,92 | |||
|phase1_expression=4.96461426024861,2.44282785347553,2.72999543633722,2.11724947914781,3.00537437967808,4.70061961353291,2.56973904655078,4.9066862907799,4.646027831005,3.7450324211519,5.47897498321616,5.98291192465023,4.28001824828014,5.85716696207283,3.33109761815663,1.82227740650843,2.09868563438444,5.0473946457318,5.21034847701807,4.2438965179803,6.54833334163237,5.56029326724958,5.22399578277871,2.07990149631429,1.83527424853736,2.8711598205751,3.01533397311352,1.29282739611533,3.23039813075836,2.26827116783938,3.10422714917427,4.44521471421742,6.1506478758457,15.8481681015439,4.04392267651784,4.65457007003779,3.26670970019791,0.837063261473815,0,1.57057123192139,0.588231488031014,2.04913645487534,0.971020706062307,4.53228544712078,4.76471576731718,7.34187008646726,7.82391344348039,9.3750817243592,10.3252505885202,6.61061656852564,3.91961980551015,7.18762821824858,5.87239121202077,2.17608642603403,6.38578218370682,3.60163210450326,4.87106847895886,7.73508138416164,9.3065571995415,4.23192783417626,5.70448263155561,14.2314703469035,10.6715375533337,13.0485459005803,1.97773272513395,10.6572017241915,19.1744070731779,21.5162250980071,8.50254820929517,6.88530285491622,8.83364837675805,15.996455126613,11.4851641294839,4.77714116938321,6.61333750025831,7.35375029288017,5.50579404996943,10.5980490610706,9.5236050618871,6.85808696197008,9.97215315266265,4.16730696445408,13.1216009530649,9.00420176050688,11.9182633265912,10.0173719061047,10.1083893367363,10.0655700745662,6.20954785332109,7.10372665003784,4.63783181922684,1.72084775396277,9.51959867190851,19.9690180905992,8.4470934268197,4.92829575807069,4.91555470461132,4.4311883870295,4.1565760736459,5.3000936176551,4.64783285263046,3.84979432242953,2.54805239706646,0,4.5463118612355,2.53359865475099,3.53867111510348,6.05174562511018,2.58937883647172,6.97678053604676,5.20455980298408,1.52232739156071,6.22661842591358,3.3158980921577,6.11461277105665,8.92232798440696,7.66304399976559,3.32578520915797,0.884610551949874,2.75003644910596,3.75430581382669,1.45462575940567,1.86391761218122,5.5628351432194,9.42510180660548,4.59822699375465,2.99537811264801,1.79970819298022,2.92261522268049,5.84183493678809,5.03250663100489,10.3036568732549,6.43149984711423,8.95004100656157,4.57133698031032,6.00292673350703,3.66621709861139,3.4833951770826,4.80173241023982,6.73413938836717,2.08192708740326,1.83921683546778,3.78130472591233,2.71268672104287,4.49040894398764,3.33095672740609,5.43470002446427,4.13925393182425,2.15567992932842,1.89106080167819,2.11141348996739,2.84954452155847,3.33656699070717,3.1342694986995,2.26360350048738,3.58261680273288,0.702213187313235,2.31613116403244,3.6941254921427,2.27838349789052,1.40715635988658,0.900310307305074,1.89395788468168,1.57411385397923,1.54267112887378,1.62773761325285,2.14618721119695,3.97002164048376,2.96207729844265,2.79084688934462,4.29664690593035,4.09359964790931,1.97595103761946,2.28150911892632,5.67782861123144,7.71784592844633,2.64335026387038,2.11560453330835,2.98603550749328,1.85789337488351,3.22168653305233,2.62188582010345,2.89091456998331,3.42406127002606,2.84717436926707,2.63518327558417,4.27269854960458,2.98434708061726,2.53453313254856,5.39291645192533,4.32276099749388,3.58454291857861,2.46568271239006,2.51346727741403,3.38123207019241,2.03651327845314,2.32742984601151,3.71719845418688,4.61626721007078,7.52811754695971,5.96595165797224,4.56569506510662,5.03969466048153,2.00214126859313,2.55526693647164,2.47348323623339,3.24576194221605,3.85883455603867,2.5462585178142,2.01387296215567,5.5125977103512,2.74561413188081,0,3.34926852901653,3.43241440426017,4.54641980304801,5.38192240565737,6.27176577772377,4.24932337383191,1.70542270593436,1.79261474086228,1.35796068620151,2.81628297946203,2.01007508930179,2.85652369063216,3.70753930929818,1.10344600874334,4.4292937929755,4.9430978283821,2.94953966488328,4.66249451037918,3.90552458170081,1.50791283939272,3.26343410291226,15.2446924635901,5.24279817978992,5.13761887960934,4.57125577709592,1.47541450839008,4.79694761688309,3.15508219416257,5.46614242015294,5.17016154558717,3.34556317133573,2.67358408898873,5.09537755419898,5.26253912177363,3.50707029493574,2.37172666767914,5.46246237917072,5.39372323791421,5.1639025063504,6.35259141478947,4.61916344323099,0,4.12727081463468,3.32555912661226,4.90373207365335,4.13422650033082,5.22639751504677,3.10113951801865,5.81653967164009,2.85197902707777,5.05658812697306,2.10837217149998,11.3449097573006,5.44703369206061,1.8006109403131,4.01011919726539,3.85806663056866,3.3694644392032,6.0645397984704,4.44282355625727,9.13394847343798,3.28540391289194,4.2366414172764,4.41056796109924,3.79238381765404,4.35953952078945,5.30753739367772,4.17803204010978,3.44695889464629,2.91480836629851,6.48988557036784,3.41741761595705,3.30218988741156,0.925972636848558,1.13021074202815,2.46049609897845,3.66045077130436,4.9293744698218,4.3384950220334,5.38979897837253,3.81868247206045,3.16335993581135,3.04979200690273,4.21220829205025,3.76358932826044,3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| |||
|short_description=p2@Scap | |||
}} |
Revision as of 16:55, 14 September 2013
Short description: | p2@Scap |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Scap_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000098350_5end |
EntrezGene: | Scap |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.59e-13 | 44 |
neurectodermal cell | 5.59e-13 | 44 |
neural cell | 5.89e-13 | 43 |
CNS neuron (sensu Vertebrata) | 6.04e-11 | 23 |
neuroblast (sensu Vertebrata) | 6.04e-11 | 23 |
embryonic cell | 2.13e-10 | 70 |
electrically responsive cell | 1.53e-09 | 39 |
electrically active cell | 1.53e-09 | 39 |
neuron | 8.70e-09 | 33 |
neuronal stem cell | 8.70e-09 | 33 |
neuroblast | 8.70e-09 | 33 |
electrically signaling cell | 8.70e-09 | 33 |
somatic stem cell | 1.69e-08 | 91 |
multi fate stem cell | 1.69e-08 | 91 |
stem cell | 1.74e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.00e-18 | 75 |
ectoderm-derived structure | 1.30e-17 | 95 |
ectoderm | 1.30e-17 | 95 |
presumptive ectoderm | 1.30e-17 | 95 |
central nervous system | 1.44e-17 | 73 |
regional part of nervous system | 7.25e-16 | 54 |
neural tube | 8.14e-15 | 52 |
neural rod | 8.14e-15 | 52 |
future spinal cord | 8.14e-15 | 52 |
neural keel | 8.14e-15 | 52 |
ecto-epithelium | 1.21e-13 | 73 |
neurectoderm | 8.11e-13 | 64 |
neural plate | 8.11e-13 | 64 |
presumptive neural plate | 8.11e-13 | 64 |
gray matter | 1.35e-12 | 34 |
brain | 8.87e-12 | 47 |
future brain | 8.87e-12 | 47 |
regional part of brain | 1.54e-11 | 46 |
brain grey matter | 1.20e-09 | 29 |
regional part of telencephalon | 1.20e-09 | 29 |
telencephalon | 1.20e-09 | 29 |
anterior neural tube | 1.24e-09 | 40 |
regional part of forebrain | 2.37e-09 | 39 |
forebrain | 2.37e-09 | 39 |
future forebrain | 2.37e-09 | 39 |
pre-chordal neural plate | 6.02e-08 | 49 |
structure with developmental contribution from neural crest | 8.21e-08 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.