FFCP PHASE1:Hg19::chr1:235813272..235813285,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2786 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4407 | |||
|TSSclassifier=strong | |||
|UniProt=P50150,B1APZ0 | |||
|association_with_transcript=7bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end | |||
|coexpression_cluster_id=C1472 | |||
|description=CAGE_peak_6_at_GNG4_5end | |||
|id=chr1:235813272..235813285,- | |||
|ontology_enrichment_celltype=CL:0002319!1.12e-15!25;CL:0000047!2.59e-11!8;CL:0000133!3.56e-11!59;CL:0000540!4.94e-09!6;CL:0000031!4.94e-09!6;CL:0000404!4.94e-09!6;CL:0000221!6.65e-08!71;CL:0000095!1.54e-07!17;CL:0000123!1.54e-07!17;CL:0000333!6.48e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.13e-18;6!CL:0000404;1.13e-18;6!CL:0002319;6.97e-12;25!CL:0000333;3.80e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,6.93e-20,8;CL:0000540,1.53e-18,6;CL:0000031,1.53e-18,6;CL:0000404,1.53e-18,6;CL:0002319,7.55e-12,25;CL:0000133,3.60e-08,59 | |||
|ontology_enrichment_development_v019=CL:0000031;1.13e-18;6 | |||
|ontology_enrichment_disease=DOID:0050687!2.39e-10!143;DOID:169!2.49e-08!6;DOID:162!4.93e-08!235;DOID:14566!7.26e-08!239;DOID:171!1.48e-07!10;DOID:3095!7.36e-07!22;DOID:2994!7.36e-07!22;DOID:305!8.86e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:169;1.34e-12;6!DOID:171;1.43e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.66e-12,6;DOID:171,1.62e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.98e-36!94;UBERON:0001016!2.98e-36!94;UBERON:0001017!8.77e-34!82;UBERON:0005743!1.42e-32!86;UBERON:0000955!6.92e-23!69;UBERON:0006238!6.92e-23!69;UBERON:0001049!2.60e-22!57;UBERON:0005068!2.60e-22!57;UBERON:0006241!2.60e-22!57;UBERON:0007135!2.60e-22!57;UBERON:0002780!1.18e-18!41;UBERON:0001890!1.18e-18!41;UBERON:0006240!1.18e-18!41;UBERON:0000924!1.63e-18!173;UBERON:0006601!1.63e-18!173;UBERON:0002616!2.80e-18!59;UBERON:0003080!5.43e-18!42;UBERON:0004121!6.74e-18!169;UBERON:0001869!1.16e-17!32;UBERON:0001893!1.26e-17!34;UBERON:0002346!3.16e-17!90;UBERON:0002791!6.81e-17!33;UBERON:0003075!1.10e-16!86;UBERON:0007284!1.10e-16!86;UBERON:0002020!4.73e-16!34;UBERON:0003528!4.73e-16!34;UBERON:0000956!9.75e-15!25;UBERON:0000203!9.75e-15!25;UBERON:0003056!3.60e-13!61;UBERON:0001950!2.21e-12!20;UBERON:0002619!2.51e-12!22;UBERON:0000153!4.13e-12!129;UBERON:0007811!4.13e-12!129;UBERON:0000033!4.67e-12!123;UBERON:0007023!1.57e-08!115;UBERON:0000013!3.82e-07!5;UBERON:0002410!3.82e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.45e-09;25!UBERON:0000203;1.45e-09;25!UBERON:0001950;2.21e-09;20!UBERON:0000013;3.80e-09;5!UBERON:0002410;3.80e-09;5!UBERON:0002791;8.69e-09;32!UBERON:0001869;1.00e-08;32!UBERON:0002619;1.75e-08;22!UBERON:0003528;1.64e-07;34!UBERON:0002020;1.64e-07;34!UBERON:0001893;2.76e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.82e-18,89;UBERON:0001017,1.12e-14,81;UBERON:0011216,1.22e-10,223;UBERON:0000956,1.63e-09,25;UBERON:0000203,1.63e-09,25;UBERON:0001950,2.68e-09,20;UBERON:0002791,4.06e-09,32;UBERON:0001869,4.06e-09,32;UBERON:0000013,4.25e-09,5;UBERON:0002410,4.25e-09,5;UBERON:0003528,1.65e-08,34;UBERON:0002020,1.65e-08,34;UBERON:0001893,1.65e-08,34;UBERON:0002619,2.08e-08,22;UBERON:0004121,3.70e-08,171;UBERON:0000924,3.70e-08,171;UBERON:0006601,3.70e-08,171;UBERON:0002780,7.70e-07,41;UBERON:0001890,7.70e-07,41;UBERON:0003080,7.70e-07,41;UBERON:0006240,7.70e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.492484232307152,0,0.313454721478088,1.43117993565528,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502497330513487,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0.662648841607426,0.232387885739037,0.310983165046111,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0.882926198829301,1.10689594688802,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,3.90419561572865,3.09315525111078,2.51274398001523,2.55175500661265,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,1.32945394550784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0,0,0.159426272728822,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0.166849141711909,0,0,0,0.270455678475983,0,0,0,0,0.242721043499027,0,0.284136146806413,0,0,0,0,1.1253553312841,0,0,0,0,0.276283915531148,1.0077309914171,0,0,0,0,0,0,0.0986434056369336,0,0,1.93866549219044,0.278304294485554,5.98841394003583,0,0,0,0.341380344856499,0.254253650292766,0.236387681767936,1.03423011972439,0.291604613383254,1.56262495439963,0,0.723578631752448,0,0.221158519862449,0.295547618953547,0.658156191461918,0,0.139423744278603,0,0,0,0,0.434589487688032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0.0884575645033392,0,2.07564790076435,1.97702302314405,2.19286093961456,0.269604531922708,0,0.468528891450678,0,0.586993856796269,0,0,0,1.53036380815245,0.126373159256976,1.50323419414493,0.72581733978073,0,0,0.313932918407225,0,0.569219092059585,0,0,0.293977192243133,0.0870592065804026,0,0,0,0,0,0.0969890164884194,0.264768380074501,0.225980740780532,0.274083849293502,0,1.07628353124994,0,0,0,0.799238438328521,0,0,1.37275998289572,0.14405479798815,0,0,0.135904206073614,0.209205692624666,0,0,0,0.273810757783986,0,0.859530882839914,0,0,0,0,0,0,0,0,0,0,0.787831823072237,1.15382201733633,1.01105315781277,0,0,0,0.272406812223151,0.803765742325096,1.10031549277787,1.24632101408756,0.2249738915515,0,1.45798935979259,0,0,0.0524545881349981,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0.244052529803926,0.1251909307065,0,0.110929051536852,0.434674820589684,0.553394539744923,0.124980407962107,0,0,0,0.936669811613763,2.8984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0.617602894321944,0,0,0,0.337884881306145,0,0,0,0.414775308455192,0,0.265729680626726,0,0,0,0,0,0,0,0,0.184105950251841,0,0.622077260032973,2.04630994085843,5.60689019262745,0.157265941855896,6.44336865332882,0,0.212574920101683,0.619678821295011,0.558644917973244,0,0,8.0057074828547,0,0,1.22035527683273,0,0.319267718114302,1.02558182120378,3.02486035466062,0.484100767249525,0.484426936895553,0,0,0.471878893390961,0,0.577628330751691,0,0,0,1.50420656698514,0,0,0,0,0.147856086217045,0.270150338473579,0.781078098613847,0,0.443910671357348,3.82882366312754,0,0,0,0,0,0,0.606965604236632,0.455324382702595,0.0887023701626388,0,0,0.135939465953663,0.72350050919134,0.118193840883968,0,0,0.942693539496011,0.560544326627578,0.913158720509496,0,0,0.142953088353313,1.10609528212909,0.697448552208751,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,3.04121302500737,2.78531085225916,0,0.33883824611688,0.329821550236287,1.81155412280008,0,0,1.41095188908457,0,1.17838273550813,0.588925401344836,0,1.2679671827502,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.339957450954573,1.74540276136151,0,0,0,0,0,0.655593431782173,0,0.407955318967927,0.26721740526556,0,0.250707539292375,0,0,0,0.103432995861895,0,0,0.258355639344024,0.248298857183432,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,1.13964576055364,0,0,2.42528045687785,0,0.122241444182866,0,0,0,0 | |||
|short_description=p6@GNG4 | |||
}} |
Revision as of 00:52, 11 January 2014
Short description: | p6@GNG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GNG4_5end |
Coexpression cluster: | C1472_nonsmall_neuroblastoma_small_tubular_carcinoid_smallcell_merkel |
Association with transcript: | 7bp_to_ENST00000391854, NM_001098722, uc001hxe.3_5end |
EntrezGene: | GNG4 |
HGNC: | 4407 |
UniProt: | P50150B1APZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 6.93e-20 | 8 |
neuron | 1.53e-18 | 6 |
neuroblast | 1.53e-18 | 6 |
electrically signaling cell | 1.53e-18 | 6 |
neural cell | 7.55e-12 | 25 |
neurectodermal cell | 3.60e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.82e-18 | 89 |
central nervous system | 1.12e-14 | 81 |
organ system subdivision | 1.22e-10 | 223 |
cerebral cortex | 1.63e-09 | 25 |
pallium | 1.63e-09 | 25 |
neocortex | 2.68e-09 | 20 |
regional part of telencephalon | 4.06e-09 | 32 |
cerebral hemisphere | 4.06e-09 | 32 |
sympathetic nervous system | 4.25e-09 | 5 |
autonomic nervous system | 4.25e-09 | 5 |
brain grey matter | 1.65e-08 | 34 |
gray matter | 1.65e-08 | 34 |
telencephalon | 1.65e-08 | 34 |
regional part of cerebral cortex | 2.08e-08 | 22 |
ectoderm-derived structure | 3.70e-08 | 171 |
ectoderm | 3.70e-08 | 171 |
presumptive ectoderm | 3.70e-08 | 171 |
regional part of forebrain | 7.70e-07 | 41 |
forebrain | 7.70e-07 | 41 |
anterior neural tube | 7.70e-07 | 41 |
future forebrain | 7.70e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.66e-12 | 6 |
neuroectodermal tumor | 1.62e-07 | 10 |