FFCP PHASE1:Hg19::chr10:17278167..17278185,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7431 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12692 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-399bp_to_BC031031_5end | |||
|coexpression_cluster_id=C168 | |||
|description=CAGE_peak_12_at_VIM_5end | |||
|id=chr10:17278167..17278185,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.59e-28!42;CL:0000860!3.88e-26!45;CL:0000557!1.24e-22!71;CL:0000839!6.35e-22!70;CL:0002009!4.34e-21!65;CL:0000766!3.00e-20!76;CL:0002194!4.96e-20!63;CL:0000576!4.96e-20!63;CL:0000040!4.96e-20!63;CL:0000559!4.96e-20!63;CL:0002031!2.69e-16!124;CL:0000738!4.14e-16!140;CL:0002087!1.14e-14!119;CL:0000134!2.03e-13!358;CL:0002320!1.11e-12!365;CL:0000219!3.77e-12!390;CL:0000763!4.73e-11!112;CL:0000049!4.73e-11!112;CL:0000037!6.51e-10!172;CL:0000566!6.51e-10!172;CL:0000988!9.50e-10!182;CL:0002032!3.35e-09!165;CL:0000837!3.35e-09!165;CL:0000048!6.00e-09!430;CL:0000723!2.85e-08!436;CL:0000034!7.88e-08!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.64e-31;33!CL:0002057;4.64e-31;33!CL:0000473;1.45e-22;39!CL:0000234;1.45e-22;39!CL:0000576;1.11e-21;48!CL:0000766;1.04e-20;69!CL:0000097;3.53e-11;5!CL:0000763;9.17e-10;100!CL:0002393;1.07e-08;6!CL:0002397;1.07e-08;6!CL:0000767;2.94e-08;3!CL:0002087;9.18e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.30e-38,72;CL:0000860,1.79e-38,42;CL:0002057,1.79e-38,42;CL:0000473,3.21e-37,48;CL:0000234,3.21e-37,48;CL:0000839,2.61e-35,66;CL:0000557,1.02e-34,67;CL:0002194,6.19e-29,59;CL:0000576,6.19e-29,59;CL:0000040,6.19e-29,59;CL:0000559,6.19e-29,59;CL:0002009,7.25e-28,61;CL:0000738,8.97e-26,136;CL:0002031,2.64e-25,120;CL:0000763,3.88e-24,108;CL:0000049,3.88e-24,108;CL:0002032,6.79e-21,161;CL:0000837,6.79e-21,161;CL:0002087,6.17e-20,115;CL:0000037,8.71e-20,168;CL:0000988,1.72e-18,177;CL:0000134,1.89e-11,354;CL:0000097,3.54e-11,5;CL:0002028,3.54e-11,5;CL:0002320,4.22e-11,361;CL:0000219,7.25e-10,386;CL:0000034,1.14e-08,441;CL:0000048,2.36e-08,427;CL:0000767,2.74e-08,3;CL:0000723,3.82e-08,433 | |||
|ontology_enrichment_development_v019=CL:0002057;1.53e-28;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!2.98e-21!86;UBERON:0002371!5.92e-21!80;UBERON:0002390!3.12e-20!102;UBERON:0003061!3.12e-20!102;UBERON:0002193!5.09e-18!112;UBERON:0004765!3.01e-16!101;UBERON:0001434!3.01e-16!101;UBERON:0002384!3.96e-13!375;UBERON:0002405!4.79e-13!115;UBERON:0002204!3.07e-09!167;UBERON:0003081!6.10e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.85e-33,76;UBERON:0001474,2.74e-30,82;UBERON:0004765,3.49e-27,90;UBERON:0002405,3.73e-26,93;UBERON:0002390,1.40e-24,98;UBERON:0003061,1.40e-24,98;UBERON:0001434,5.40e-24,100;UBERON:0002193,7.29e-22,108;UBERON:0002384,1.40e-12,371;UBERON:0002204,1.98e-12,167;UBERON:0003081,1.87e-10,203 | |||
|phase1_expression=0.908391896352783,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.502170558379211,0,0.0821005894499457,0,0,1.53531759238885,2.16742572642506,0,0,0,0,0,0,1.66198622559563,1.40381113229099,2.60413044859022,0,0,0,0.872389432677388,0,0.970336244751265,0.464858073811369,1.23350366406548,0.309706370895104,2.01384674625505,0.512321413058201,0.945928919554341,1.72372840368309,0.645484683583826,0,1.31769637679823,1.09162460023138,1.79778787556068,4.28517449319264,4.8139354061414,4.47535988059329,0.329851300186716,1.59570926097305,0.852449501065388,3.77272010217159,0.56738522469114,0.622822248995575,1.7587406567972,0.521482918420201,1.08594422352558,2.42159801053347,2.57794345191295,0.949387162322653,0.422510572623884,0.212604299965044,0.419317291016752,0.336985893439485,0.600707571366025,0.964353520182481,0.285012743741249,0.59675003159727,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,1.12101712596307,0,0.196709770113833,1.57204305099666,0.411202997999018,0.334372990781356,0,0,0,0.111410456885174,0.589211814949674,0,0,0.25618263945135,0.130059347559878,0.164437904603676,0.276350017785848,0,0.14828656316206,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0.473554504088034,0,1.00803371612366,2.40696176205157,0.724122019413995,0,0,0,0,0,0.144846518960824,0,0,0.283604451492204,0.221729397462564,0.175669571386252,0.0654895377488563,0,0,0,0,0.531831842075461,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0.25326102332916,0.264818361626438,2.0078563452417,0.354668382198357,0,0,0,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0.448346041655403,0.23486899728753,0.161872944368132,0.421352420106746,0.408308342509787,0.245668634623536,0,0,0,0,0,0.336672227908132,0.125118519871964,0,0,0,0,0.113432183160021,0.89694817844431,0,0,1.20036438433761,0.103052529238439,0,0.37223371266318,1.85653965465393,0.389748020644795,0.504867548488229,0,0.323292113637624,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0.462985512576611,0,0,0,0.738651018262192,0,0,0,0,0,0,0,0,0,0.176096868026452,13.0616712790686,6.62951785718023,6.05963680446624,0.126995788584338,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,2.10833939483032,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0.224170287987055,0.394061520403854,1.07813787429759,0.513372145118994,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.831883446123229,0.535286966391485,0.315404830067869,0,0,0,0,0,0.184369168541703,0.695068915744663,0,0,0.206768026122887,0.647142602455851,0.533637789017222,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.177561725313127,0.164254312027618,0,0,0,0,0,0,0.182091168006717,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0.219259876645935,0,0,0.328014645699706,0,0.206082023295445,0.0915694648183434,0.082509499920588,0,0,0,0.193341436584244,0.154048617114644,0,0,0.214840489736547,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0.359744915166629,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0.430234056612155,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0.199579371432817,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0.23874448473769,0,0.307160702099232,0,0,0.333926115068718,0,0,0.19924798825107,0,0,0.511343412510774,0,0.933118762985422,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,0,0,0.638002319463839,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.247127877893006,0.104421949505455,0,0,0,0,0,0.728341138602278,0,0,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0.277349346026277,0,0,0,0.17472666824203,0.859930162358083,0,0,0.0821154570532092,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0.124252535565433,0,0.271808412147228,0,0,0.288950589901519,0,0,0,0,0.262887354279314,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,1.16495949527454,0,0,0,0,0.0846733320657845,0,0,0,0,0,0.2249738915515,0.77380195455795,0,0,0,0,0.105600336519406,0.179287339332845,0.191915197319445,0.714695326373367,0,0,0.542999601753713,0,0.326587360109409,0,0,1.19271615249795,0,0,0,0,0,0.342173675768659,0,0,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0,0.138348634936231,0,0,0.570930667089935,0,0,0,0.298509605773748,0,1.66441758450784,0,0.50313580350515,0,0.457680136793847,0.604923695052956,0.310874401165561,0,0,0,0.155262956876259,0.829412415681711,0.53168342911599,0.521745061811734,0.150257608997218,0,0.406870733204662,0.909243296012797,0,0.928067519756987,0.398095888698616,0.400027764663154,0.68679141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| |||
|short_description=p12@VIM | |||
}} |
Revision as of 01:59, 11 January 2014
Short description: | p12@VIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_VIM_5end |
Coexpression cluster: | C168_Mast_CD14_immature_Basophils_Eosinophils_CD34_Peripheral |
Association with transcript: | -399bp_to_BC031031_5end |
EntrezGene: | VIM |
HGNC: | 12692 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.30e-38 | 72 |
classical monocyte | 1.79e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.79e-38 | 42 |
defensive cell | 3.21e-37 | 48 |
phagocyte | 3.21e-37 | 48 |
myeloid lineage restricted progenitor cell | 2.61e-35 | 66 |
granulocyte monocyte progenitor cell | 1.02e-34 | 67 |
monopoietic cell | 6.19e-29 | 59 |
monocyte | 6.19e-29 | 59 |
monoblast | 6.19e-29 | 59 |
promonocyte | 6.19e-29 | 59 |
macrophage dendritic cell progenitor | 7.25e-28 | 61 |
leukocyte | 8.97e-26 | 136 |
hematopoietic lineage restricted progenitor cell | 2.64e-25 | 120 |
myeloid cell | 3.88e-24 | 108 |
common myeloid progenitor | 3.88e-24 | 108 |
hematopoietic oligopotent progenitor cell | 6.79e-21 | 161 |
hematopoietic multipotent progenitor cell | 6.79e-21 | 161 |
nongranular leukocyte | 6.17e-20 | 115 |
hematopoietic stem cell | 8.71e-20 | 168 |
hematopoietic cell | 1.72e-18 | 177 |
mesenchymal cell | 1.89e-11 | 354 |
mast cell | 3.54e-11 | 5 |
basophil mast progenitor cell | 3.54e-11 | 5 |
connective tissue cell | 4.22e-11 | 361 |
motile cell | 7.25e-10 | 386 |
stem cell | 1.14e-08 | 441 |
multi fate stem cell | 2.36e-08 | 427 |
basophil | 2.74e-08 | 3 |
somatic stem cell | 3.82e-08 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.85e-33 | 76 |
bone element | 2.74e-30 | 82 |
skeletal element | 3.49e-27 | 90 |
immune system | 3.73e-26 | 93 |
hematopoietic system | 1.40e-24 | 98 |
blood island | 1.40e-24 | 98 |
skeletal system | 5.40e-24 | 100 |
hemolymphoid system | 7.29e-22 | 108 |
connective tissue | 1.40e-12 | 371 |
musculoskeletal system | 1.98e-12 | 167 |
lateral plate mesoderm | 1.87e-10 | 203 |