FFCP PHASE1:Hg19::chr12:104697504..104697585,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=493861 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32961 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N140 | |||
|association_with_transcript=0bp_to_ENST00000527879,NM_001008394,uc001tkw.2_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_EID3_5end | |||
|id=chr12:104697504..104697585,+ | |||
|ontology_enrichment_celltype=CL:0000791!3.07e-11!18;CL:0000789!3.07e-11!18;CL:0002420!3.07e-11!18;CL:0002419!3.07e-11!18;CL:0000790!3.07e-11!18;CL:0000738!5.93e-09!140;CL:0002031!1.45e-08!124;CL:0000625!2.59e-08!11;CL:0000838!5.56e-08!52;CL:0000084!1.36e-07!25;CL:0000827!1.36e-07!25;CL:0000542!1.94e-07!53;CL:0000051!1.94e-07!53;CL:0002087!5.85e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.27e-12;18!CL:0000789;4.27e-12;18!CL:0002419;4.27e-12;18!CL:0000625;4.10e-09;11!CL:0000084;5.98e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.73e-12,18;CL:0000789,5.73e-12,18;CL:0002420,5.73e-12,18;CL:0002419,5.73e-12,18;CL:0000790,5.73e-12,18;CL:0000738,1.18e-10,136;CL:0002031,2.82e-10,120;CL:0000838,9.14e-10,52;CL:0000542,2.89e-09,53;CL:0000051,2.89e-09,53;CL:0000625,5.27e-09,11;CL:0000084,7.21e-09,25;CL:0000827,7.21e-09,25;CL:0002087,1.05e-08,115 | |||
|ontology_enrichment_development_v019=CL:0000790;4.27e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.11e-14!115;UBERON:0001049!2.29e-12!57;UBERON:0005068!2.29e-12!57;UBERON:0006241!2.29e-12!57;UBERON:0007135!2.29e-12!57;UBERON:0002616!2.22e-11!59;UBERON:0003080!1.91e-09!42;UBERON:0002780!2.55e-09!41;UBERON:0001890!2.55e-09!41;UBERON:0006240!2.55e-09!41;UBERON:0003075!5.79e-09!86;UBERON:0007284!5.79e-09!86;UBERON:0002346!1.59e-08!90;UBERON:0001893!2.53e-08!34;UBERON:0002020!2.65e-08!34;UBERON:0003528!2.65e-08!34;UBERON:0001869!4.23e-08!32;UBERON:0002791!5.77e-08!33;UBERON:0001017!8.14e-08!82;UBERON:0005743!1.18e-07!86;UBERON:0000955!2.20e-07!69;UBERON:0006238!2.20e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;1.94e-07;53!UBERON:0002616;1.94e-07;53!UBERON:0001869;3.27e-07;32!UBERON:0001893;3.43e-07;34!UBERON:0002780;5.07e-07;41!UBERON:0001890;5.07e-07;41!UBERON:0003528;5.51e-07;34!UBERON:0002020;5.51e-07;34!UBERON:0002791;8.03e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.88e-14,114;UBERON:0001049,8.37e-13,56;UBERON:0005068,8.37e-13,56;UBERON:0006241,8.37e-13,56;UBERON:0007135,8.37e-13,56;UBERON:0000073,1.77e-12,53;UBERON:0002616,1.77e-12,53;UBERON:0002780,1.34e-09,41;UBERON:0001890,1.34e-09,41;UBERON:0003080,1.34e-09,41;UBERON:0006240,1.34e-09,41;UBERON:0001893,1.14e-08,34;UBERON:0003528,1.20e-08,34;UBERON:0002020,1.20e-08,34;UBERON:0001869,2.02e-08,32;UBERON:0002791,4.23e-08,32;UBERON:0001017,4.37e-08,81;UBERON:0003075,1.07e-07,82;UBERON:0007284,1.07e-07,82;UBERON:0000955,1.23e-07,68;UBERON:0006238,1.23e-07,68;UBERON:0002346,1.64e-07,86 | |||
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| |||
|short_description=p1@EID3 | |||
}} |
Revision as of 15:35, 11 January 2014
Short description: | p1@EID3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EID3_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000527879, NM_001008394, uc001tkw.2_5end |
EntrezGene: | EID3 |
HGNC: | 32961 |
UniProt: | Q8N140 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.73e-12 | 18 |
alpha-beta T cell | 5.73e-12 | 18 |
immature T cell | 5.73e-12 | 18 |
mature T cell | 5.73e-12 | 18 |
immature alpha-beta T cell | 5.73e-12 | 18 |
leukocyte | 1.18e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 2.82e-10 | 120 |
lymphoid lineage restricted progenitor cell | 9.14e-10 | 52 |
lymphocyte | 2.89e-09 | 53 |
common lymphoid progenitor | 2.89e-09 | 53 |
CD8-positive, alpha-beta T cell | 5.27e-09 | 11 |
T cell | 7.21e-09 | 25 |
pro-T cell | 7.21e-09 | 25 |
nongranular leukocyte | 1.05e-08 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.88e-14 | 114 |
neural tube | 8.37e-13 | 56 |
neural rod | 8.37e-13 | 56 |
future spinal cord | 8.37e-13 | 56 |
neural keel | 8.37e-13 | 56 |
regional part of nervous system | 1.77e-12 | 53 |
regional part of brain | 1.77e-12 | 53 |
regional part of forebrain | 1.34e-09 | 41 |
forebrain | 1.34e-09 | 41 |
anterior neural tube | 1.34e-09 | 41 |
future forebrain | 1.34e-09 | 41 |
telencephalon | 1.14e-08 | 34 |
brain grey matter | 1.20e-08 | 34 |
gray matter | 1.20e-08 | 34 |
cerebral hemisphere | 2.02e-08 | 32 |
regional part of telencephalon | 4.23e-08 | 32 |
central nervous system | 4.37e-08 | 81 |
neural plate | 1.07e-07 | 82 |
presumptive neural plate | 1.07e-07 | 82 |
brain | 1.23e-07 | 68 |
future brain | 1.23e-07 | 68 |
neurectoderm | 1.64e-07 | 86 |