FFCP PHASE1:Hg19::chr13:110829306..110829320,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr13:110829306..110829320,+ | |||
|id=chr13:110829306..110829320,+ | |||
|ontology_enrichment_celltype=CL:0000222!4.38e-09!119;CL:1000449!1.74e-07!16;CL:0000055!4.86e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0002138;3.02e-09;6!CL:0002569;8.56e-09;6!CL:0000669;2.08e-08;4!CL:0000115;2.41e-08;36!CL:0002575;2.63e-08;2!CL:1000746;1.28e-07;7!CL:1000612;1.28e-07;7!CL:1000449;3.77e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,3.17e-09,6;CL:0002138,3.17e-09,6;CL:0005022,3.17e-09,6;CL:0000115,4.63e-09,36;CL:0002569,9.36e-09,6;CL:0002575,2.94e-08,2;CL:0000669,3.35e-08,4;CL:1000746,1.18e-07,7;CL:1000612,1.18e-07,7;CL:1000449,3.92e-07,15;CL:0000213,6.04e-07,58;CL:0000215,6.04e-07,58;CL:0002078,8.41e-07,45 | |||
|ontology_enrichment_development_v019=CL:0005022;3.02e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!2.85e-09!79;UBERON:0007798!2.85e-09!79;UBERON:0003914!7.07e-09!118;UBERON:0004535!1.97e-08!110;UBERON:0001009!2.51e-08!113;UBERON:0004211!1.74e-07!16;UBERON:0001285!1.74e-07!16;UBERON:0007684!1.74e-07!16;UBERON:0003220!1.74e-07!16;UBERON:0004208!1.74e-07!16;UBERON:0004872!2.29e-07!84;UBERON:0000353!5.32e-07!17;UBERON:0001851!8.11e-07!16;UBERON:0006555!8.28e-07!17;UBERON:0005103!8.28e-07!17;UBERON:0000083!8.28e-07!17;UBERON:0009201!8.28e-07!17;UBERON:0004819!8.28e-07!17;UBERON:0006553!8.28e-07!17;UBERON:0003074!8.28e-07!17;UBERON:0003060!8.28e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0003422;8.56e-09;6!UBERON:0002465;3.80e-08;10!UBERON:0002331;4.11e-08;10!UBERON:0005406;7.53e-08;2!UBERON:0000074;1.28e-07;7!UBERON:0001229;1.28e-07;7!UBERON:0003104;1.53e-07;7!UBERON:0009142;1.53e-07;7!UBERON:0006555;3.77e-07;15!UBERON:0004819;3.77e-07;15!UBERON:0001285;3.77e-07;15!UBERON:0007684;3.77e-07;15!UBERON:0001473;6.23e-07;8!UBERON:0004536;6.23e-07;8!UBERON:0006558;6.23e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003422,9.36e-09,6;UBERON:0002465,3.53e-08,10;UBERON:0002331,4.39e-08,10;UBERON:0000358,4.39e-08,10;UBERON:0000307,4.39e-08,10;UBERON:0000091,4.39e-08,10;UBERON:0000087,4.39e-08,10;UBERON:0007010,4.39e-08,10;UBERON:0007806,4.39e-08,10;UBERON:0008780,4.39e-08,10;UBERON:0005728,4.39e-08,10;UBERON:0005406,6.07e-08,2;UBERON:0010532,1.18e-07,7;UBERON:0000074,1.18e-07,7;UBERON:0001229,1.18e-07,7;UBERON:0001230,1.18e-07,7;UBERON:0003220,1.18e-07,7;UBERON:0005749,1.18e-07,7;UBERON:0004199,1.18e-07,7;UBERON:0004209,1.18e-07,7;UBERON:0004198,1.18e-07,7;UBERON:0003914,3.19e-07,117;UBERON:0004211,3.92e-07,15;UBERON:0009773,3.92e-07,15;UBERON:0001231,3.92e-07,15;UBERON:0001285,3.92e-07,15;UBERON:0007684,3.92e-07,15;UBERON:0004208,3.92e-07,15;UBERON:0001473,6.46e-07,8;UBERON:0004536,6.46e-07,8;UBERON:0006558,6.46e-07,8 | |||
|phase1_expression=0,0.642301571672949,0.140954404095971,1.0007329835313,1.34088328328186,5.23403114460221,0,0,3.13422753839806,0.491467873003018,0,0,0,0.123766352960047,0.331397375727916,0.672325146451775,0.602694528023977,0,1.46379839637152,0,0,0.626909442956176,0.286235987131057,0,1.00434111675842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,2.04580098949649,0,0.50133791063589,0,0,0.486634870302636,0.0945348171640679,0.221729397462564,0.351339142772504,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0.208994966536811,1.03366703667732,0,0.66944122552934,1.20848795132744,0,3.1728067481262,0.735326160691737,1.62028389576352,0.267899184852239,0,0.225222960966644,0,0,0.183201743930407,0,0,0,3.97577561356255,0.759783069987479,0,1.14734648299525,0,1.12135520028461,0,3.7000132262574,0,1.61652806483626,0.326923806226917,1.21085942115945,0.576175924479999,0,0.312160076830321,0,0.448346041655403,0,0,0,0,0.245668634623536,0,0,0.741800787835671,0,0.718618141816238,0.168336113954066,0,0,0,0,0.150238058906597,2.49550802952046,0.717558542755448,0.213557388818567,0.635795703478686,0,0,0.515281080091258,0,0,0.194874010322397,0.504867548488229,0.0920498986422993,0,0.355009592516614,0.201504196455281,0,0.193260853163297,0,0,0.121973706129595,0.265059536642971,0.116193942869518,0.310983165046111,0,0,0,0,0,0.464367928031979,0,0.118306800039844,0.337169380156203,0,0.220587945464788,0.217879444092406,0,0,0,0,0,4.20725321410337,0.8231480226628,0,0,0,0,0,0,0.514703430895577,0,0,0,0,0,0,0,0.34779121492523,0.587043471179108,3.03169540298255,1.85194205030644,4.94660795809955,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.224262168690721,0.87192013766656,0.95339771567235,0.129271715757778,0,5.071816515336,1.86156681609409,1.04007436911366,0,0,0,2.00169191121407,1.08524321078289,0.823240336780769,3.58309802723109,0.710783897485092,1.58390374586686,0.301439377059586,0,0.399891964728228,0,0,0,2.15662369942424,1.14861935834114,0,0.289562613335158,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0,0.271265023699736,1.87173775377726,0,1.57702415033935,0.234282829985426,0,0,0,1.99267679560631,0.184369168541703,0.0868836144680828,3.13281851940385,4.46086450954113,0,0,0,0,0,0.604780586659361,0,0.460385919864187,0.561320188866147,0.128139149255701,0,2.2519548960105,1.48418066444991,0,0,0.0821271560138091,0,0,0,0,0,0,0.728364672026868,0.131124414959424,0.451199612907412,0.693138033939733,0,1.46139224653261,1.05551628892876,3.4120015221269,1.70093705276516,0.863663664408557,1.54227252690289,0.270946437543853,1.00337954770971,0.254876273045038,0,0.223874754722178,0,0,0.512900250232778,0.328014645699706,0,0,0,0,0,0,0,0,0.308097234229289,0,0,0.107420244868274,0,0.0852266274161009,0.712256285173899,0.165284915360978,0,0,0,0,0.62962469366128,0,0.616067160352178,0,0,0,0,0.744316738719335,0.949138274156178,0.571890581771475,0.255897791311334,0.42793898803392,0,0,0.179872457583315,0,0.117812402345686,0,0,0.421258456238981,0,1.46228093778771,0,0.272999822815972,0.282810863907425,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0.143411352204052,0.88424136911809,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,2.19172787076177,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0.0897576444097721,0.325942115766024,0,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,3.62972148145992,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,1.35588444468319,0.411125773940253,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0.104602846312333,0.101998217636322,0,0.600420288709789,0.273810757783986,0,0,0,0.279282401272254,0,0,0.399358000997982,0,0,0.940568614814168,2.88239906833923,0,0,0,0,0,0,0,0,0.160753148465019,0.275078873194468,0,0,0,0,0,0,0.629455057619977,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0.170388021785422,0,0.146552233678082,0,0,0,0.171086837884329,0,0.106787412567695,0,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.0620964029413835,0.276697269872462,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0.295710299979268,0.477890301491107,0,0.465788870628778,0.414706207840855,0.53168342911599,0.521745061811734,0,0.380805212168795,0,1.09109195521536,0.107410557042488,0,0.398095888698616,0,0,0,0,0.385239660814607,0.214441591374926,0.782982875895635,0,0,0,0.537266523244462,2.47041157728778,0,0,0.964570191354574,0,2.04993214870357,0.34543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| |||
|short_description=p@chr13:110829306..110829320,+ | |||
}} |
Revision as of 18:39, 11 January 2014
Short description: | p@chr13:110829306..110829320, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr13:110829306..110829320, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 3.17e-09 | 6 |
endothelial cell of lymphatic vessel | 3.17e-09 | 6 |
vascular lymphangioblast | 3.17e-09 | 6 |
endothelial cell | 4.63e-09 | 36 |
mesenchymal stem cell of umbilical cord | 9.36e-09 | 6 |
central nervous system pericyte | 2.94e-08 | 2 |
pericyte cell | 3.35e-08 | 4 |
glomerular cell | 1.18e-07 | 7 |
kidney corpuscule cell | 1.18e-07 | 7 |
epithelial cell of nephron | 3.92e-07 | 15 |
lining cell | 6.04e-07 | 58 |
barrier cell | 6.04e-07 | 58 |
meso-epithelial cell | 8.41e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
mesenchyme of umbilical cord | 9.36e-09 | 6 |
lymphoid system | 3.53e-08 | 10 |
umbilical cord | 4.39e-08 | 10 |
blastocyst | 4.39e-08 | 10 |
blastula | 4.39e-08 | 10 |
bilaminar disc | 4.39e-08 | 10 |
inner cell mass | 4.39e-08 | 10 |
cleaving embryo | 4.39e-08 | 10 |
connecting stalk | 4.39e-08 | 10 |
inner cell mass derived epiblast | 4.39e-08 | 10 |
extraembryonic mesoderm | 4.39e-08 | 10 |
perirenal fat | 6.07e-08 | 2 |
primitive nephron | 1.18e-07 | 7 |
renal glomerulus | 1.18e-07 | 7 |
renal corpuscle | 1.18e-07 | 7 |
glomerular capsule | 1.18e-07 | 7 |
metanephric mesenchyme | 1.18e-07 | 7 |
glomerular tuft | 1.18e-07 | 7 |
S-shaped body | 1.18e-07 | 7 |
renal vesicle | 1.18e-07 | 7 |
comma-shaped body | 1.18e-07 | 7 |
epithelial tube | 3.19e-07 | 117 |
nephron epithelium | 3.92e-07 | 15 |
renal tubule | 3.92e-07 | 15 |
nephron tubule | 3.92e-07 | 15 |
nephron | 3.92e-07 | 15 |
uriniferous tubule | 3.92e-07 | 15 |
nephrogenic mesenchyme | 3.92e-07 | 15 |
lymphatic vessel | 6.46e-07 | 8 |
lymph vasculature | 6.46e-07 | 8 |
lymphatic part of lymphoid system | 6.46e-07 | 8 |