FFCP PHASE1:Hg19::chr19:36239450..36239484,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55957 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33234 | |||
|TSSclassifier=strong | |||
|UniProt=Q96GY3 | |||
|association_with_transcript=-27bp_to_ENST00000301159,uc002obm.2_5end | |||
|description=CAGE_peak_1_at_LIN37_5end | |||
|id=chr19:36239450..36239484,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.16e-11!90;UBERON:0000924!3.37e-11!173;UBERON:0006601!3.37e-11!173;UBERON:0000073!9.34e-11!94;UBERON:0001016!9.34e-11!94;UBERON:0001049!1.18e-10!57;UBERON:0005068!1.18e-10!57;UBERON:0006241!1.18e-10!57;UBERON:0007135!1.18e-10!57;UBERON:0003075!1.23e-10!86;UBERON:0007284!1.23e-10!86;UBERON:0005743!1.34e-10!86;UBERON:0004121!2.58e-10!169;UBERON:0001017!9.55e-10!82;UBERON:0003056!1.81e-09!61;UBERON:0000955!2.54e-09!69;UBERON:0006238!2.54e-09!69;UBERON:0000153!8.08e-09!129;UBERON:0007811!8.08e-09!129;UBERON:0002780!1.04e-08!41;UBERON:0001890!1.04e-08!41;UBERON:0006240!1.04e-08!41;UBERON:0002616!1.59e-08!59;UBERON:0003080!1.67e-08!42;UBERON:0000033!3.35e-08!123;UBERON:0001869!3.61e-08!32;UBERON:0002619!4.46e-08!22;UBERON:0001893!4.79e-08!34;UBERON:0002020!8.40e-08!34;UBERON:0003528!8.40e-08!34;UBERON:0002791!9.96e-08!33;UBERON:0007023!1.99e-07!115;UBERON:0001950!3.15e-07!20;UBERON:0000956!8.43e-07!25;UBERON:0000203!8.43e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.67e-08;22!UBERON:0001869;2.39e-07;32!UBERON:0001950;2.57e-07;20!UBERON:0001893;3.16e-07;34!UBERON:0000956;4.20e-07;25!UBERON:0000203;4.20e-07;25!UBERON:0002791;4.62e-07;32!UBERON:0003528;7.05e-07;34!UBERON:0002020;7.05e-07;34!UBERON:0000073;8.20e-07;53!UBERON:0002616;8.20e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,2.25e-12,104;UBERON:0002346,3.71e-11,86;UBERON:0001049,7.48e-11,56;UBERON:0005068,7.48e-11,56;UBERON:0006241,7.48e-11,56;UBERON:0007135,7.48e-11,56;UBERON:0000073,8.00e-11,53;UBERON:0002616,8.00e-11,53;UBERON:0004121,8.39e-11,171;UBERON:0000924,8.39e-11,171;UBERON:0006601,8.39e-11,171;UBERON:0003075,3.88e-10,82;UBERON:0007284,3.88e-10,82;UBERON:0001016,5.07e-10,89;UBERON:0001017,7.28e-10,81;UBERON:0000955,1.88e-09,68;UBERON:0006238,1.88e-09,68;UBERON:0003056,5.57e-09,61;UBERON:0002780,1.04e-08,41;UBERON:0001890,1.04e-08,41;UBERON:0003080,1.04e-08,41;UBERON:0006240,1.04e-08,41;UBERON:0001869,3.61e-08,32;UBERON:0002619,4.46e-08,22;UBERON:0001893,4.79e-08,34;UBERON:0003528,8.40e-08,34;UBERON:0002020,8.40e-08,34;UBERON:0002791,1.15e-07,32;UBERON:0001950,3.15e-07,20;UBERON:0007023,3.89e-07,114;UBERON:0000956,8.42e-07,25;UBERON:0000203,8.42e-07,25;UBERON:0010314,9.40e-07,132 | |||
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| |||
|short_description=p1@LIN37 | |||
}} |
Revision as of 22:51, 20 January 2014
Short description: | p1@LIN37 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIN37_5end |
Coexpression cluster: | NA |
Association with transcript: | -27bp_to_ENST00000301159, uc002obm.2_5end |
EntrezGene: | LIN37 |
HGNC: | 33234 |
UniProt: | Q96GY3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 2.25e-12 | 104 |
neurectoderm | 3.71e-11 | 86 |
neural tube | 7.48e-11 | 56 |
neural rod | 7.48e-11 | 56 |
future spinal cord | 7.48e-11 | 56 |
neural keel | 7.48e-11 | 56 |
regional part of nervous system | 8.00e-11 | 53 |
regional part of brain | 8.00e-11 | 53 |
ectoderm-derived structure | 8.39e-11 | 171 |
ectoderm | 8.39e-11 | 171 |
presumptive ectoderm | 8.39e-11 | 171 |
neural plate | 3.88e-10 | 82 |
presumptive neural plate | 3.88e-10 | 82 |
nervous system | 5.07e-10 | 89 |
central nervous system | 7.28e-10 | 81 |
brain | 1.88e-09 | 68 |
future brain | 1.88e-09 | 68 |
pre-chordal neural plate | 5.57e-09 | 61 |
regional part of forebrain | 1.04e-08 | 41 |
forebrain | 1.04e-08 | 41 |
anterior neural tube | 1.04e-08 | 41 |
future forebrain | 1.04e-08 | 41 |
cerebral hemisphere | 3.61e-08 | 32 |
regional part of cerebral cortex | 4.46e-08 | 22 |
telencephalon | 4.79e-08 | 34 |
brain grey matter | 8.40e-08 | 34 |
gray matter | 8.40e-08 | 34 |
regional part of telencephalon | 1.15e-07 | 32 |
neocortex | 3.15e-07 | 20 |
adult organism | 3.89e-07 | 114 |
cerebral cortex | 8.42e-07 | 25 |
pallium | 8.42e-07 | 25 |
structure with developmental contribution from neural crest | 9.40e-07 | 132 |