FFCP PHASE1:Hg19::chr2:166152385..166152397,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=6326 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10588 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=51bp_to_BC172765,GU014841_5end | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_5_at_SCN2A_5end | |||
|id=chr2:166152385..166152397,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!4.82e-71!34;UBERON:0001869!3.00e-69!32;UBERON:0002791!7.97e-67!33;UBERON:0002020!8.15e-65!34;UBERON:0003528!8.15e-65!34;UBERON:0001049!3.67e-62!57;UBERON:0005068!3.67e-62!57;UBERON:0006241!3.67e-62!57;UBERON:0007135!3.67e-62!57;UBERON:0002619!3.28e-60!22;UBERON:0002780!2.43e-58!41;UBERON:0001890!2.43e-58!41;UBERON:0006240!2.43e-58!41;UBERON:0003080!7.28e-57!42;UBERON:0002616!2.21e-55!59;UBERON:0000956!8.05e-53!25;UBERON:0000203!8.05e-53!25;UBERON:0001950!2.62e-51!20;UBERON:0001017!3.78e-51!82;UBERON:0000955!1.47e-49!69;UBERON:0006238!1.47e-49!69;UBERON:0005743!1.57e-48!86;UBERON:0003075!8.09e-46!86;UBERON:0007284!8.09e-46!86;UBERON:0002346!1.59e-43!90;UBERON:0000073!1.99e-43!94;UBERON:0001016!1.99e-43!94;UBERON:0003056!7.57e-38!61;UBERON:0000200!4.08e-30!6;UBERON:0007023!3.90e-28!115;UBERON:0000033!1.07e-27!123;UBERON:0000153!3.83e-26!129;UBERON:0007811!3.83e-26!129;UBERON:0001871!4.89e-22!7;UBERON:0004121!1.21e-21!169;UBERON:0000924!5.28e-21!173;UBERON:0006601!5.28e-21!173;UBERON:0000369!4.80e-20!4;UBERON:0002435!4.80e-20!4;UBERON:0000204!4.80e-20!4;UBERON:0010082!4.80e-20!4;UBERON:0000025!2.37e-18!194;UBERON:0000349!3.25e-16!5;UBERON:0002771!5.41e-16!3;UBERON:0005383!1.65e-15!3;UBERON:0005382!1.65e-15!3;UBERON:0000064!2.47e-14!219;UBERON:0002420!1.60e-13!9;UBERON:0007245!1.60e-13!9;UBERON:0010009!1.60e-13!9;UBERON:0010011!1.60e-13!9;UBERON:0000454!1.60e-13!9;UBERON:0004111!1.64e-13!241;UBERON:0002308!1.74e-13!9;UBERON:0000125!1.74e-13!9;UBERON:0001870!1.53e-11!2;UBERON:0009663!1.58e-11!7;UBERON:0000477!2.33e-11!286;UBERON:0001954!3.00e-11!2;UBERON:0003022!3.00e-11!2;UBERON:0002421!3.00e-11!2;UBERON:0002600!3.00e-11!2;UBERON:0001873!4.76e-11!2;UBERON:0010122!4.76e-11!2;UBERON:0002360!6.13e-11!2;UBERON:0000094!6.13e-11!2;UBERON:0007645!6.13e-11!2;UBERON:0000483!6.18e-11!309;UBERON:0000119!9.16e-11!312;UBERON:0002021!5.29e-10!5;UBERON:0001872!1.06e-09!5;UBERON:0002680!3.54e-09!9;UBERON:0001895!3.54e-09!9;UBERON:0010092!3.54e-09!9;UBERON:0003076!2.94e-08!15;UBERON:0003057!2.94e-08!15;UBERON:0000988!3.04e-07!3;UBERON:0000062!6.14e-07!511;UBERON:0004733!6.73e-07!12;UBERON:0002028!6.73e-07!12;UBERON:0007277!6.73e-07!12;UBERON:0000481!9.62e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;3.00e-40;5!UBERON:0002771;4.32e-26;2!UBERON:0001950;4.59e-22;20!UBERON:0002619;3.07e-20;22!UBERON:0000956;5.04e-18;25!UBERON:0000203;5.04e-18;25!UBERON:0002114;1.03e-17;2!UBERON:0002791;3.88e-14;32!UBERON:0001869;3.88e-14;32!UBERON:0002108;3.42e-11;4!UBERON:0003528;9.71e-11;34!UBERON:0002020;9.71e-11;34!UBERON:0001893;2.00e-10;34!UBERON:0000200;1.22e-09;6!UBERON:0001871;1.89e-08;6!UBERON:0002780;1.69e-07;41!UBERON:0001890;1.69e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,3.31e-40,5;UBERON:0002771,4.32e-26,2;UBERON:0001950,4.76e-22,20;UBERON:0002619,3.18e-20,22;UBERON:0000956,5.19e-18,25;UBERON:0000203,5.19e-18,25;UBERON:0002114,9.46e-18,2;UBERON:0002791,2.11e-14,32;UBERON:0001869,2.11e-14,32;UBERON:0003528,1.23e-13,34;UBERON:0002020,1.23e-13,34;UBERON:0001893,1.23e-13,34;UBERON:0002780,1.61e-11,41;UBERON:0001890,1.61e-11,41;UBERON:0003080,1.61e-11,41;UBERON:0006240,1.61e-11,41;UBERON:0002108,3.26e-11,4;UBERON:0000200,1.22e-09,6;UBERON:0000073,3.71e-09,53;UBERON:0002616,3.71e-09,53;UBERON:0001049,1.02e-08,56;UBERON:0005068,1.02e-08,56;UBERON:0006241,1.02e-08,56;UBERON:0007135,1.02e-08,56;UBERON:0001871,1.89e-08,6;UBERON:0003056,4.39e-08,61;UBERON:0000955,2.97e-07,68;UBERON:0006238,2.97e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0.995213339381022,0.886642856860642,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,3.90484047686282,0.3755727921195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,2.87162909937057,1.26035848110859,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0,0.380494861163441,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.197318320688547,0,0,0,0.157115589916002,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.596852325484105,0,0,0,0.301925687133347,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,1.74540276136151,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@SCN2A | |||
}} |
Revision as of 06:24, 21 January 2014
Short description: | p5@SCN2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_5_at_SCN2A_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 51bp_to_BC172765, GU014841_5end |
EntrezGene: | SCN2A |
HGNC: | 10588 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 3.31e-40 | 5 |
middle temporal gyrus | 4.32e-26 | 2 |
neocortex | 4.76e-22 | 20 |
regional part of cerebral cortex | 3.18e-20 | 22 |
cerebral cortex | 5.19e-18 | 25 |
pallium | 5.19e-18 | 25 |
duodenum | 9.46e-18 | 2 |
regional part of telencephalon | 2.11e-14 | 32 |
cerebral hemisphere | 2.11e-14 | 32 |
brain grey matter | 1.23e-13 | 34 |
gray matter | 1.23e-13 | 34 |
telencephalon | 1.23e-13 | 34 |
regional part of forebrain | 1.61e-11 | 41 |
forebrain | 1.61e-11 | 41 |
anterior neural tube | 1.61e-11 | 41 |
future forebrain | 1.61e-11 | 41 |
small intestine | 3.26e-11 | 4 |
gyrus | 1.22e-09 | 6 |
regional part of nervous system | 3.71e-09 | 53 |
regional part of brain | 3.71e-09 | 53 |
neural tube | 1.02e-08 | 56 |
neural rod | 1.02e-08 | 56 |
future spinal cord | 1.02e-08 | 56 |
neural keel | 1.02e-08 | 56 |
temporal lobe | 1.89e-08 | 6 |
pre-chordal neural plate | 4.39e-08 | 61 |
brain | 2.97e-07 | 68 |
future brain | 2.97e-07 | 68 |