FFCP PHASE1:Hg19::chr7:105029329..105029376,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6733 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11306 | |||
|TSSclassifier=strong | |||
|UniProt=P78362,C9J2M4,F8WAV6 | |||
|association_with_transcript=0bp_to_ENST00000393651,ENST00000460391,ENST00000465112,NM_182692,uc003vcv.2_5end | |||
|description=CAGE_peak_1_at_SRPK2_5end | |||
|id=chr7:105029329..105029376,- | |||
|ontology_enrichment_celltype=CL:0000542!7.82e-07!53;CL:0000051!7.82e-07!53 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,7.82e-07,53;CL:0000051,7.82e-07,53 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.56e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.48e-25!115;UBERON:0001049!3.37e-20!57;UBERON:0005068!3.37e-20!57;UBERON:0006241!3.37e-20!57;UBERON:0007135!3.37e-20!57;UBERON:0001017!9.92e-19!82;UBERON:0000955!2.72e-18!69;UBERON:0006238!2.72e-18!69;UBERON:0000073!2.23e-17!94;UBERON:0001016!2.23e-17!94;UBERON:0003080!2.80e-17!42;UBERON:0002616!8.46e-17!59;UBERON:0002780!9.01e-17!41;UBERON:0001890!9.01e-17!41;UBERON:0006240!9.01e-17!41;UBERON:0005743!1.76e-16!86;UBERON:0002020!3.08e-14!34;UBERON:0003528!3.08e-14!34;UBERON:0001893!8.10e-14!34;UBERON:0002791!2.32e-13!33;UBERON:0001869!4.12e-13!32;UBERON:0002619!8.91e-13!22;UBERON:0001950!1.04e-11!20;UBERON:0000956!1.33e-11!25;UBERON:0000203!1.33e-11!25;UBERON:0003075!1.36e-10!86;UBERON:0007284!1.36e-10!86;UBERON:0002346!3.57e-09!90;UBERON:0000153!3.59e-08!129;UBERON:0007811!3.59e-08!129;UBERON:0000033!9.09e-08!123;UBERON:0003056!2.71e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;8.61e-13;22!UBERON:0002780;2.11e-12;41!UBERON:0001890;2.11e-12;41!UBERON:0003528;4.91e-12;34!UBERON:0002020;4.91e-12;34!UBERON:0001869;7.22e-12;32!UBERON:0001893;7.94e-12;34!UBERON:0002791;9.71e-12;32!UBERON:0001950;1.00e-11;20!UBERON:0000956;1.35e-11;25!UBERON:0000203;1.35e-11;25!UBERON:0000073;6.06e-11;53!UBERON:0002616;6.06e-11;53!UBERON:0001016;4.19e-09;83!UBERON:0000955;6.67e-09;68!UBERON:0001017;1.27e-08;75!UBERON:0007023;3.37e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.24e-25,114;UBERON:0001049,1.08e-19,56;UBERON:0005068,1.08e-19,56;UBERON:0006241,1.08e-19,56;UBERON:0007135,1.08e-19,56;UBERON:0001016,4.29e-19,89;UBERON:0001017,2.92e-18,81;UBERON:0000073,3.61e-18,53;UBERON:0002616,3.61e-18,53;UBERON:0000955,8.22e-18,68;UBERON:0006238,8.22e-18,68;UBERON:0002780,9.01e-17,41;UBERON:0001890,9.01e-17,41;UBERON:0003080,9.01e-17,41;UBERON:0006240,9.01e-17,41;UBERON:0003528,3.08e-14,34;UBERON:0002020,3.08e-14,34;UBERON:0001893,8.10e-14,34;UBERON:0001869,4.12e-13,32;UBERON:0002791,4.74e-13,32;UBERON:0002619,8.91e-13,22;UBERON:0001950,1.04e-11,20;UBERON:0000956,1.33e-11,25;UBERON:0000203,1.33e-11,25;UBERON:0003075,1.86e-09,82;UBERON:0007284,1.86e-09,82;UBERON:0002346,4.08e-08,86;UBERON:0003056,2.43e-07,61;UBERON:0011216,7.79e-07,223 | |||
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| |||
|short_description=p1@SRPK2 | |||
}} |
Revision as of 18:36, 22 January 2014
Short description: | p1@SRPK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SRPK2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393651, ENST00000460391, ENST00000465112, NM_182692, uc003vcv.2_5end |
EntrezGene: | SRPK2 |
HGNC: | 11306 |
UniProt: | P78362C9J2M4F8WAV6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 7.82e-07 | 53 |
common lymphoid progenitor | 7.82e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.24e-25 | 114 |
neural tube | 1.08e-19 | 56 |
neural rod | 1.08e-19 | 56 |
future spinal cord | 1.08e-19 | 56 |
neural keel | 1.08e-19 | 56 |
nervous system | 4.29e-19 | 89 |
central nervous system | 2.92e-18 | 81 |
regional part of nervous system | 3.61e-18 | 53 |
regional part of brain | 3.61e-18 | 53 |
brain | 8.22e-18 | 68 |
future brain | 8.22e-18 | 68 |
regional part of forebrain | 9.01e-17 | 41 |
forebrain | 9.01e-17 | 41 |
anterior neural tube | 9.01e-17 | 41 |
future forebrain | 9.01e-17 | 41 |
brain grey matter | 3.08e-14 | 34 |
gray matter | 3.08e-14 | 34 |
telencephalon | 8.10e-14 | 34 |
cerebral hemisphere | 4.12e-13 | 32 |
regional part of telencephalon | 4.74e-13 | 32 |
regional part of cerebral cortex | 8.91e-13 | 22 |
neocortex | 1.04e-11 | 20 |
cerebral cortex | 1.33e-11 | 25 |
pallium | 1.33e-11 | 25 |
neural plate | 1.86e-09 | 82 |
presumptive neural plate | 1.86e-09 | 82 |
neurectoderm | 4.08e-08 | 86 |
pre-chordal neural plate | 2.43e-07 | 61 |
organ system subdivision | 7.79e-07 | 223 |