CL:0000120: Difference between revisions
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|located_in= | |located_in= | ||
|name=granule cell | |name=granule cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:30, 12 September 2014
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000117(CNS neuron (sensu Vertebrata)) |
|---|
Children
| is a: | CL:0001031 (cerebellar granule cell) |
|---|---|
| derives from: | FF:0000108 (mouse granule cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11495-119F1
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11656-122E9
- 11713-123C3 (Mouse Granule cells, donor1)
- 11731-123E3 (Mouse Granule cells, donor2)
- 13532-145G4 (cerebellar granule cells, embryo E13, biol_rep1 (E13R1))
- 13533-145G5 (cerebellar granule cells, embryo E13, biol_rep2 (E13R2))
- 13534-145G6 (cerebellar granule cells, embryo E13, biol_rep3 (E13R3))
- 13535-145G7 (cerebellar granule cells, embryo E15, biol_rep1 (E15R1))
... further results Mouse (Mus musculus)
- 11495-119F1
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11656-122E9
- 11713-123C3 (Mouse Granule cells, donor1)
- 11731-123E3 (Mouse Granule cells, donor2)
- 13532-145G4 (cerebellar granule cells, embryo E13, biol_rep1 (E13R1))
- 13533-145G5 (cerebellar granule cells, embryo E13, biol_rep2 (E13R2))
- 13534-145G6 (cerebellar granule cells, embryo E13, biol_rep3 (E13R3))
- 13535-145G7 (cerebellar granule cells, embryo E15, biol_rep1 (E15R1))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000120 (granule cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.33e-65 | FFCP PHASE2:Mm9::chr1:122498982..122498991,+#_467d6d2a4609b7cfd3223c0f9a60b555 | p3@En1 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr1:122498982..122498991,+#_467d6d2a4609b7cfd3223c0f9a60b555 | p3@En1 |
| 1.18e-44 | FFCP PHASE2:Mm9::chr5:120881918..120881921,+#_17f23baa4aa36678d189f675d321791b | p5@Lhx5 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr5:120881918..120881921,+#_17f23baa4aa36678d189f675d321791b | p5@Lhx5 |
| 1.18e-44 | FFCP PHASE2:Mm9::chr5:120881939..120881946,+#_17f23baa4aa36678d189f675d321791b | p2@Lhx5 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr5:120881939..120881946,+#_17f23baa4aa36678d189f675d321791b | p2@Lhx5 |
| 3.27e-44 | FFCP PHASE2:Mm9::chr13:40821195..40821200,-#_3e9c99abdb7dd989e282cd2b6becbd41 | p@chr13:40821195..40821200, - |
| 3.27e-44 | FFCP PHASE1:Mm9::chr13:40821195..40821200,-#_3e9c99abdb7dd989e282cd2b6becbd41 | p@chr13:40821195..40821200, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr18:46372467..46372475,-#_a08aa737a691508504cc5ce959a50a01 | p7@Trim36 |
| 8.97e-44 | FFCP PHASE1:Mm9::chr18:42554021..42554024,+#_a08aa737a691508504cc5ce959a50a01 | p2@Pou4f3 |
| 8.97e-44 | FFCP PHASE2:Mm9::chr18:46372467..46372475,-#_a08aa737a691508504cc5ce959a50a01 | p7@Trim36 |
| 8.97e-44 | FFCP PHASE2:Mm9::chr18:42554021..42554024,+#_a08aa737a691508504cc5ce959a50a01 | p2@Pou4f3 |
| 2.79e-38 | FFCP PHASE1:Mm9::chr6:138375213..138375222,-#_33e34b9ea21de9de112979239594de4b | p19@Lmo3 |
| 2.79e-38 | FFCP PHASE2:Mm9::chr13:95587649..95587666,+#_33e34b9ea21de9de112979239594de4b | p@chr13:95587649..95587666, + |
| 2.79e-38 | FFCP PHASE1:Mm9::chr13:95587649..95587666,+#_33e34b9ea21de9de112979239594de4b | p@chr13:95587649..95587666, + |
| 2.79e-38 | FFCP PHASE2:Mm9::chr6:138375213..138375222,-#_33e34b9ea21de9de112979239594de4b | p19@Lmo3 |
| 6.64e-38 | FFCP PHASE2:Mm9::chr5:28536607..28536622,-#_97e28017397dcbb7f1d1f828b58021c2 | p2@Cnpy1 |
| 6.64e-38 | FFCP PHASE1:Mm9::chr10:28864024..28864035,+#_97e28017397dcbb7f1d1f828b58021c2 | p8@6330407J23Rik |
| 6.64e-38 | FFCP PHASE2:Mm9::chr10:28864024..28864035,+#_97e28017397dcbb7f1d1f828b58021c2 | p8@6330407J23Rik |
| 6.64e-38 | FFCP PHASE1:Mm9::chr5:28536607..28536622,-#_97e28017397dcbb7f1d1f828b58021c2 | p2@Cnpy1 |
| 1.58e-37 | FFCP PHASE1:Mm9::chr19:36992738..36992777,-#_f064d35c466b0f71d8dabe235850878c | p@chr19:36992738..36992777, - |
| 1.58e-37 | FFCP PHASE2:Mm9::chr19:36992738..36992777,-#_f064d35c466b0f71d8dabe235850878c | p@chr19:36992738..36992777, - |
| 2.1e-37 | FFCP PHASE1:Mm9::chr1:79759005..79759018,-#_2142cbe4f1e729ff2af3f4814172ea6a | p7@Wdfy1 |
| 2.1e-37 | FFCP PHASE2:Mm9::chr1:79759005..79759018,-#_2142cbe4f1e729ff2af3f4814172ea6a | p7@Wdfy1 |
| 3.72e-37 | FFCP PHASE2:Mm9::chr12:28021078..28021088,+#_0ebc6e5c4940a74a4e906d5ee61d6545 | p@chr12:28021078..28021088, + |
| 3.72e-37 | FFCP PHASE1:Mm9::chr12:28021078..28021088,+#_0ebc6e5c4940a74a4e906d5ee61d6545 | p@chr12:28021078..28021088, + |
| 1.02e-33 | FFCP PHASE2:Mm9::chr1:19094212..19094219,+#_b3794dc712ce7e122215b6d681f19279 | p@chr1:19094212..19094219, + |
| 1.02e-33 | FFCP PHASE1:Mm9::chr1:19094212..19094219,+#_b3794dc712ce7e122215b6d681f19279 | p@chr1:19094212..19094219, + |
| 2.8e-33 | FFCP PHASE1:Mm9::chr5:28536444..28536454,-#_e57c64e7533e57b75de0927c759a3f58 | p5@Cnpy1 |
| 2.8e-33 | FFCP PHASE2:Mm9::chr5:28536444..28536454,-#_e57c64e7533e57b75de0927c759a3f58 | p5@Cnpy1 |
| 5.97e-33 | FFCP PHASE2:Mm9::chr17:80706736..80706753,+#_7df7b3da012ebf5c1f85636c1856f647 | p1@Arhgef33 |
| 5.97e-33 | FFCP PHASE1:Mm9::chr17:80706736..80706753,+#_7df7b3da012ebf5c1f85636c1856f647 | p1@Arhgef33 |
| 9.86e-33 | FFCP PHASE1:Mm9::chr9:91273412..91273420,+#_1c125d67560854c62c915ba3ba62f673 | p7@Zic4 |
| 9.86e-33 | FFCP PHASE2:Mm9::chr9:91273412..91273420,+#_1c125d67560854c62c915ba3ba62f673 | p7@Zic4 |
| 1.16e-30 | FFCP PHASE1:Mm9::chr3:17226363..17226378,-#_cb65257d8ef3c0e7479cf24725b8177f | p@chr3:17226363..17226378, - |
| 1.16e-30 | FFCP PHASE2:Mm9::chr3:17226363..17226378,-#_cb65257d8ef3c0e7479cf24725b8177f | p@chr3:17226363..17226378, - |
| 1.46e-30 | FFCP PHASE2:Mm9::chr1:19093112..19093124,+#_2dad7723c4d7d7e5cb20789fa39c7b57 | p1@Tfap2d |
| 1.46e-30 | FFCP PHASE1:Mm9::chr1:19093112..19093124,+#_2dad7723c4d7d7e5cb20789fa39c7b57 | p1@Tfap2d |
| 3.62e-30 | FFCP PHASE1:Mm9::chr19:47098327..47098338,+#_ff2fa627009fe8e539c133b23d2e4e04 | p@chr19:47098327..47098338, + |
| 3.62e-30 | FFCP PHASE2:Mm9::chr19:47098327..47098338,+#_ff2fa627009fe8e539c133b23d2e4e04 | p@chr19:47098327..47098338, + |
| 4.54e-30 | FFCP PHASE1:Mm9::chr1:140745165..140745180,-#_2892fcd001adf669e8b190a8b2b5a042 | p6@Lhx9 |
| 4.54e-30 | FFCP PHASE2:Mm9::chr1:140745165..140745180,-#_2892fcd001adf669e8b190a8b2b5a042 | p6@Lhx9 |
| 5.64e-30 | FFCP PHASE1:Mm9::chr10:80924310..80924312,+#_7feac7927f85084cd0dfdf8ba758d3da | p1@ENSMUST00000156926 |
| 5.64e-30 | FFCP PHASE2:Mm9::chr10:80924310..80924312,+#_7feac7927f85084cd0dfdf8ba758d3da | p1@ENSMUST00000156926 |
| 1.54e-29 | FFCP PHASE1:Mm9::chr15:99468218..99468227,-#_0c6ef69de65db6bb8394cbf8fb230267 | p4@Racgap1 |
| 1.54e-29 | FFCP PHASE2:Mm9::chr15:99468218..99468227,-#_0c6ef69de65db6bb8394cbf8fb230267 | p4@Racgap1 |
| 2.19e-29 | FFCP PHASE1:Mm9::chr19:55969096..55969105,+#_bc0f664e106956d65a0bb115d5ea16dd | p52@Tcf7l2 |
| 2.19e-29 | FFCP PHASE2:Mm9::chr19:55969096..55969105,+#_bc0f664e106956d65a0bb115d5ea16dd | p52@Tcf7l2 |
| 3.42e-29 | FFCP PHASE1:Mm9::chr19:55968827..55968868,+#_0a2d34827d7f4e870e4812ea94bb550a | p29@Tcf7l2 |
| 3.42e-29 | FFCP PHASE1:Mm9::chr12:28020918..28020929,-#_0a2d34827d7f4e870e4812ea94bb550a | p@chr12:28020918..28020929, - |
| 3.42e-29 | FFCP PHASE2:Mm9::chr19:55968827..55968868,+#_0a2d34827d7f4e870e4812ea94bb550a | p29@Tcf7l2 |
| 3.42e-29 | FFCP PHASE2:Mm9::chr12:28020918..28020929,-#_0a2d34827d7f4e870e4812ea94bb550a | p@chr12:28020918..28020929, - |
| 7.38e-28 | FFCP PHASE1:Mm9::chr17:37182755..37182764,+#_995860e4ca4191b532835d9f1abe4fce | p18@Gabbr1 |
| 7.38e-28 | FFCP PHASE2:Mm9::chr4:139389439..139389450,-#_995860e4ca4191b532835d9f1abe4fce | p3@Pax7 |
| 7.38e-28 | FFCP PHASE1:Mm9::chr4:139389439..139389450,-#_995860e4ca4191b532835d9f1abe4fce | p3@Pax7 |
| 7.38e-28 | FFCP PHASE2:Mm9::chr17:37182755..37182764,+#_995860e4ca4191b532835d9f1abe4fce | p18@Gabbr1 |
| 1.68e-27 | FFCP PHASE1:Mm9::chr4:45839835..45839846,-#_e0e8bafb9c48d32188c0fc103cef7148 | p6@Igfbpl1 |
| 1.68e-27 | FFCP PHASE2:Mm9::chr4:45839835..45839846,-#_e0e8bafb9c48d32188c0fc103cef7148 | p6@Igfbpl1 |
| 2.06e-27 | FFCP PHASE2:Mm9::chr7:144388046..144388053,-#_df128e725f5296cba1f730891fcd397a | p@chr7:144388046..144388053, - |
| 2.06e-27 | FFCP PHASE1:Mm9::chr7:144388046..144388053,-#_df128e725f5296cba1f730891fcd397a | p@chr7:144388046..144388053, - |
| 2.53e-27 | FFCP PHASE2:Mm9::chr1:42752036..42752049,-#_45ef735e8bb34d89477fad32722663ba | p7@2610017I09Rik |
| 2.53e-27 | FFCP PHASE1:Mm9::chr1:42752036..42752049,-#_45ef735e8bb34d89477fad32722663ba | p7@2610017I09Rik |
| 3.8e-27 | FFCP PHASE2:Mm9::chr1:140744193..140744208,-#_98df080accdf8febf21ee58d3fbcf800 | p4@Lhx9 |
| 3.8e-27 | FFCP PHASE1:Mm9::chr1:140744193..140744208,-#_98df080accdf8febf21ee58d3fbcf800 | p4@Lhx9 |
| 4.66e-27 | FFCP PHASE2:Mm9::chr4:107353563..107353590,-#_6c66549030043d88d38a3056e0968b61 | p6@Dmrtb1 |
| 4.66e-27 | FFCP PHASE1:Mm9::chr4:107353563..107353590,-#_6c66549030043d88d38a3056e0968b61 | p6@Dmrtb1 |
| 4.66e-27 | FFCP PHASE2:Mm9::chr9:111254413..111254426,+#_6c66549030043d88d38a3056e0968b61 | p@chr9:111254413..111254426, + |
| 4.66e-27 | FFCP PHASE1:Mm9::chr9:111254413..111254426,+#_6c66549030043d88d38a3056e0968b61 | p@chr9:111254413..111254426, + |
| 5.7e-27 | FFCP PHASE2:Mm9::chr2:158436393..158436401,-#_e17d813d047e5e5e8c1368863acfe579 | p2@ENSMUST00000145773 |
| 5.7e-27 | FFCP PHASE1:Mm9::chr2:158436393..158436401,-#_e17d813d047e5e5e8c1368863acfe579 | p2@ENSMUST00000145773 |
| 1.57e-26 | FFCP PHASE2:Mm9::chr10:80488930..80488949,-#_4d67dffa2218ef25af2886cb2c49a85f | p@chr10:80488930..80488949, - |
| 1.57e-26 | FFCP PHASE1:Mm9::chr16:72563629..72563640,+#_4d67dffa2218ef25af2886cb2c49a85f | p@chr16:72563629..72563640, + |
| 1.57e-26 | FFCP PHASE1:Mm9::chr10:80488930..80488949,-#_4d67dffa2218ef25af2886cb2c49a85f | p@chr10:80488930..80488949, - |
| 1.57e-26 | FFCP PHASE2:Mm9::chr16:72563629..72563640,+#_4d67dffa2218ef25af2886cb2c49a85f | p@chr16:72563629..72563640, + |
| 1.57e-26 | FFCP PHASE2:Mm9::chr8:108128922..108128940,+#_4d67dffa2218ef25af2886cb2c49a85f | p3@Fam65a |
| 1.57e-26 | FFCP PHASE1:Mm9::chr8:108128922..108128940,+#_4d67dffa2218ef25af2886cb2c49a85f | p3@Fam65a |
| 1.91e-26 | FFCP PHASE1:Mm9::chr17:33766278..33766289,+#_1ab84265d8d39d32e80ef8f48bfa575e | p11@Zfp414 |
| 1.91e-26 | FFCP PHASE2:Mm9::chr17:33766278..33766289,+#_1ab84265d8d39d32e80ef8f48bfa575e | p11@Zfp414 |
| 2.86e-26 | FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_542d2c6381741fe9bedc63662e5af1b8 | p@chr2:70399563..70399583, + |
| 2.86e-26 | FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_542d2c6381741fe9bedc63662e5af1b8 | p@chr2:70399563..70399583, + |
| 3.49e-26 | FFCP PHASE2:Mm9::chr4:107353455..107353476,-#_b4f6d913374a53180f3cef38d1a25e7f | p8@Dmrtb1 |
| 3.49e-26 | FFCP PHASE1:Mm9::chr4:107353455..107353476,-#_b4f6d913374a53180f3cef38d1a25e7f | p8@Dmrtb1 |
| 4.47e-25 | FFCP PHASE2:Mm9::chr5:106887428..106887437,-#_0445346668fa7213499f2892f8819082 | p4@Barhl2 |
| 4.47e-25 | FFCP PHASE1:Mm9::chr5:106887428..106887437,-#_0445346668fa7213499f2892f8819082 | p4@Barhl2 |
| 6.49e-25 | FFCP PHASE2:Mm9::chr19:55968998..55969011,+#_06ab08c412babc7acbf66b43d9087bb8 | p39@Tcf7l2 |
| 6.49e-25 | FFCP PHASE1:Mm9::chr9:69608856..69608874,+#_06ab08c412babc7acbf66b43d9087bb8 | p1@B230323A14Rik |
| 6.49e-25 | FFCP PHASE2:Mm9::chr9:69608856..69608874,+#_06ab08c412babc7acbf66b43d9087bb8 | p1@B230323A14Rik |
| 6.49e-25 | FFCP PHASE1:Mm9::chr19:55968998..55969011,+#_06ab08c412babc7acbf66b43d9087bb8 | p39@Tcf7l2 |
| 7.81e-25 | FFCP PHASE1:Mm9::chr4:107353480..107353492,-#_d7b0910b5efba033177b4e0a069a40b9 | p9@Dmrtb1 |
| 7.81e-25 | FFCP PHASE2:Mm9::chr4:107353480..107353492,-#_d7b0910b5efba033177b4e0a069a40b9 | p9@Dmrtb1 |
| 1.36e-24 | FFCP PHASE1:Mm9::chr7:67361722..67361744,-#_15f096b1c05adfb06f710d882131f4b2 | p@chr7:67361722..67361744, - |
| 1.36e-24 | FFCP PHASE2:Mm9::chr7:67361722..67361744,-#_15f096b1c05adfb06f710d882131f4b2 | p@chr7:67361722..67361744, - |
| 1.63e-24 | FFCP PHASE2:Mm9::chr19:55993992..55994008,+#_f88290ceb2ad6d4a8edde8d93c5bbdbc | p@chr19:55993992..55994008, + |
| 1.63e-24 | FFCP PHASE1:Mm9::chr19:55993992..55994008,+#_f88290ceb2ad6d4a8edde8d93c5bbdbc | p@chr19:55993992..55994008, + |
| 1.74e-24 | FFCP PHASE1:Mm9::chr5:28536710..28536719,-#_cc2aa4cd4943ab41071e7a8db9a93832 | p11@Cnpy1 |
| 1.74e-24 | FFCP PHASE2:Mm9::chr5:28536710..28536719,-#_cc2aa4cd4943ab41071e7a8db9a93832 | p11@Cnpy1 |
| 1.96e-24 | FFCP PHASE2:Mm9::chr13:29042477..29042484,-#_5b4c5f399e8bbf1e540d72e2a5cdc16b | p@chr13:29042477..29042484, - |
| 1.96e-24 | FFCP PHASE1:Mm9::chr13:29042477..29042484,-#_5b4c5f399e8bbf1e540d72e2a5cdc16b | p@chr13:29042477..29042484, - |
| 2.36e-24 | FFCP PHASE1:Mm9::chr5:37670900..37670910,+#_04ad5d0e54e446ed0518de126efec149 | p@chr5:37670900..37670910, + |
| 2.36e-24 | FFCP PHASE2:Mm9::chr5:37670900..37670910,+#_04ad5d0e54e446ed0518de126efec149 | p@chr5:37670900..37670910, + |
