FFCP PHASE1:Mm9::chr14:100683672..100683717,-: Difference between revisions
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{{FFCP|EntrezGene=16597|HGNC=|MCL_coexpression_id=13|UniProt=|association_with_transcript=-66bp_to_uc011zpg.1_5end|description=CAGE_peak_1_at_Klf12_5end|id=chr14:100683672..100683717,-|ontology_enrichment_celltype=CL:0000117!5.70e-09!23;CL:0000337!5.70e-09!23;CL:0000540!1.67e-07!33;CL:0000047!1.67e-07!33;CL:0000031!1.67e-07!33;CL:0000404!1.67e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.53e-09,23;CL:0000337,3.53e-09,23;CL:0000540,1.14e-07,33;CL:0000047,1.14e-07,33;CL:0000031,1.14e-07,33;CL:0000404,1.14e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.97e-20!63;UBERON:0002346!8.96e-18!71;UBERON:0003075!8.96e-18!71;UBERON:0007284!8.96e-18!71;UBERON:0003056!7.16e-17!49;UBERON:0001049!8.57e-17!52;UBERON:0005068!8.57e-17!52;UBERON:0006241!8.57e-17!52;UBERON:0007135!8.57e-17!52;UBERON:0001017!9.15e-17!73;UBERON:0005743!9.15e-17!73;UBERON:0000955!9.45e-17!50;UBERON:0006238!9.45e-17!50;UBERON:0002616!4.55e-16!49;UBERON:0000073!7.55e-16!75;UBERON:0001016!7.55e-16!75;UBERON:0004121!2.08e-15!102;UBERON:0000924!2.08e-15!102;UBERON:0006601!2.08e-15!102;UBERON:0003080!2.46e-14!40;UBERON:0002780!1.04e-13!39;UBERON:0001890!1.04e-13!39;UBERON:0006240!1.04e-13!39;UBERON:0002020!2.98e-11!34;UBERON:0000153!7.16e-11!94;UBERON:0004111!7.87e-11!122;UBERON:0000025!2.07e-10!114;UBERON:0000468!3.55e-10!333;UBERON:0002791!1.14e-09!29;UBERON:0003528!1.14e-09!29;UBERON:0001893!1.14e-09!29;UBERON:0007811!1.22e-08!86;UBERON:0000922!4.21e-08!328;UBERON:0000475!3.90e-07!200|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.43e-18,64;UBERON:0003075,2.43e-18,64;UBERON:0007284,2.43e-18,64;UBERON:0000073,9.69e-18,54;UBERON:0003056,5.56e-17,49;UBERON:0001017,7.56e-17,73;UBERON:0001049,1.09e-16,52;UBERON:0005068,1.09e-16,52;UBERON:0006241,1.09e-16,52;UBERON:0007135,1.09e-16,52;UBERON:0010371,7.63e-16,73;UBERON:0001016,8.67e-16,75;UBERON:0004121,1.66e-15,95;UBERON:0000924,1.66e-15,95;UBERON:0006601,1.66e-15,95;UBERON:0010314,4.39e-15,92;UBERON:0000955,4.77e-15,47;UBERON:0006238,4.77e-15,47;UBERON:0003080,2.25e-14,40;UBERON:0002616,2.26e-14,46;UBERON:0002780,9.81e-14,39;UBERON:0001890,9.81e-14,39;UBERON:0006240,9.81e-14,39;UBERON:0002020,3.18e-11,34;UBERON:0004111,5.99e-10,122;UBERON:0000025,9.78e-10,114;UBERON:0003528,1.33e-09,29;UBERON:0002791,1.33e-09,29;UBERON:0001893,1.33e-09,29;UBERON:0000922,5.75e-08,320|phase1_expression=12.3314612270691,0,0,0,0,0.16787927191189,0,0.516493293766305,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,1.26184866143295,1.64537320326887,3.81950686618227,3.57181818634493,0.0992909512008853,0,0.319984845586813,0.22940928106717,0,0,0,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,2.34717403304412,0.65407546914134,0.219686182734472,0.58328969722285,1.1198913730029,0,1.17447824240415,0,0,1.54355661621568,1.71920063963254,3.09403255366465,11.7343547298567,14.8117474196169,6.33831403506179,1.35537812827653,0,0,0,0,1.79760066311043,1.53687322128622,9.53944433237994,6.88530285491622,4.6271491497304,5.42736870367227,9.27647871996777,12.7390431183552,12.2682202903343,10.1114066527102,12.1127469099328,12.1302971180928,12.595735727012,11.2103344570665,12.5338071735301,16.1483144872596,8.93385596804419,6.75315132038016,9.93188610549266,17.0884579574727,15.0913981647049,8.01517617048792,0.454357159999104,1.5870027622425,0.869593466105033,0.860423876981386,0,4.85732872474035,1.94932925234301,5.37632264516803,4.21333260395256,0,0,0,9.43650912503759,3.84979432242953,2.54805239706646,7.11066703153331,0,0,0,4.22480354960522,0.517875767294343,6.08612770165782,5.37804512975021,6.39377504455497,3.22861696158482,3.01445281105245,5.40908052824242,1.75933227861546,0,2.16899035379867,0,7.60304194752823,4.41683036920787,6.30337829075789,0,8.78342391034641,5.86450779077674,0,0,0,0,17.5255048103643,15.0975198930147,13.5706700281894,15.9918374576894,9.46147192122223,20.1554403222773,15.5751612545047,4.27725328171328,3.98102305952298,0,2.73574412652416,12.4915625244196,6.89706313300419,9.36323074987816,11.9056806090215,9.86529237694254,15.5017601544668,11.056803498048,5.95017752699736,10.1316956678436,20.9907748986279,17.5951124163949,5.91828477554452,19.7413546950174,11.8405736617537,10.906453229621,9.35461054046918,0,0,0,1.86413195281952,3.04883877975425,1.44049649168812,1.65721314909647,1.96764231747404,2.1597395804233,0.930135779001631,2.95100741539581,1.05088808130453,1.6455984991348,4.26835406605648,5.02626619184305,3.94739966048397,6.58650345873152,7.1129401942997,9.2527577368216,5.86556290561921,0,0,7.25180051819795,9.28946687441754,6.05677068213839,5.24377164020691,3.7804267453628,2.28270751335071,0.474529061544512,0.988193728344065,1.25667604400135,0.397912944082302,0.779856348476481,0,0,0.995706366271836,3.03468641524931,4.91268604221834,4.50830942692322,4.68398054044223,2.71533482034676,2.38461787627083,4.99568643281633,7.67572769493931,5.49495547444812,4.81248939295022,0.88935788126144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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:16597 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-66bp_to_uc011zpg.1_5end | |||
|cluster_id=chr14:100683672..100683717,- | |||
|description=CAGE_peak_1_at_Klf12_5end | |||
|id=chr14:100683672..100683717,- | |||
|ontology_enrichment_celltype=CL:0000117!5.70e-09!23;CL:0000337!5.70e-09!23;CL:0000540!1.67e-07!33;CL:0000047!1.67e-07!33;CL:0000031!1.67e-07!33;CL:0000404!1.67e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.53e-09,23;CL:0000337,3.53e-09,23;CL:0000540,1.14e-07,33;CL:0000047,1.14e-07,33;CL:0000031,1.14e-07,33;CL:0000404,1.14e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.97e-20!63;UBERON:0002346!8.96e-18!71;UBERON:0003075!8.96e-18!71;UBERON:0007284!8.96e-18!71;UBERON:0003056!7.16e-17!49;UBERON:0001049!8.57e-17!52;UBERON:0005068!8.57e-17!52;UBERON:0006241!8.57e-17!52;UBERON:0007135!8.57e-17!52;UBERON:0001017!9.15e-17!73;UBERON:0005743!9.15e-17!73;UBERON:0000955!9.45e-17!50;UBERON:0006238!9.45e-17!50;UBERON:0002616!4.55e-16!49;UBERON:0000073!7.55e-16!75;UBERON:0001016!7.55e-16!75;UBERON:0004121!2.08e-15!102;UBERON:0000924!2.08e-15!102;UBERON:0006601!2.08e-15!102;UBERON:0003080!2.46e-14!40;UBERON:0002780!1.04e-13!39;UBERON:0001890!1.04e-13!39;UBERON:0006240!1.04e-13!39;UBERON:0002020!2.98e-11!34;UBERON:0000153!7.16e-11!94;UBERON:0004111!7.87e-11!122;UBERON:0000025!2.07e-10!114;UBERON:0000468!3.55e-10!333;UBERON:0002791!1.14e-09!29;UBERON:0003528!1.14e-09!29;UBERON:0001893!1.14e-09!29;UBERON:0007811!1.22e-08!86;UBERON:0000922!4.21e-08!328;UBERON:0000475!3.90e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.43e-18,64;UBERON:0003075,2.43e-18,64;UBERON:0007284,2.43e-18,64;UBERON:0000073,9.69e-18,54;UBERON:0003056,5.56e-17,49;UBERON:0001017,7.56e-17,73;UBERON:0001049,1.09e-16,52;UBERON:0005068,1.09e-16,52;UBERON:0006241,1.09e-16,52;UBERON:0007135,1.09e-16,52;UBERON:0010371,7.63e-16,73;UBERON:0001016,8.67e-16,75;UBERON:0004121,1.66e-15,95;UBERON:0000924,1.66e-15,95;UBERON:0006601,1.66e-15,95;UBERON:0010314,4.39e-15,92;UBERON:0000955,4.77e-15,47;UBERON:0006238,4.77e-15,47;UBERON:0003080,2.25e-14,40;UBERON:0002616,2.26e-14,46;UBERON:0002780,9.81e-14,39;UBERON:0001890,9.81e-14,39;UBERON:0006240,9.81e-14,39;UBERON:0002020,3.18e-11,34;UBERON:0004111,5.99e-10,122;UBERON:0000025,9.78e-10,114;UBERON:0003528,1.33e-09,29;UBERON:0002791,1.33e-09,29;UBERON:0001893,1.33e-09,29;UBERON:0000922,5.75e-08,320 | |||
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| |||
|short_description=p1@Klf12 | |||
}} |
Revision as of 21:23, 3 August 2015
Short description: | p1@Klf12 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Klf12_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -66bp_to_uc011zpg.1_5end |
EntrezGene: | 16597 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.53e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.53e-09 | 23 |
neuron | 1.14e-07 | 33 |
neuronal stem cell | 1.14e-07 | 33 |
neuroblast | 1.14e-07 | 33 |
electrically signaling cell | 1.14e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.43e-18 | 64 |
neural plate | 2.43e-18 | 64 |
presumptive neural plate | 2.43e-18 | 64 |
regional part of nervous system | 9.69e-18 | 54 |
pre-chordal neural plate | 5.56e-17 | 49 |
central nervous system | 7.56e-17 | 73 |
neural tube | 1.09e-16 | 52 |
neural rod | 1.09e-16 | 52 |
future spinal cord | 1.09e-16 | 52 |
neural keel | 1.09e-16 | 52 |
ecto-epithelium | 7.63e-16 | 73 |
nervous system | 8.67e-16 | 75 |
ectoderm-derived structure | 1.66e-15 | 95 |
ectoderm | 1.66e-15 | 95 |
presumptive ectoderm | 1.66e-15 | 95 |
structure with developmental contribution from neural crest | 4.39e-15 | 92 |
brain | 4.77e-15 | 47 |
future brain | 4.77e-15 | 47 |
anterior neural tube | 2.25e-14 | 40 |
regional part of brain | 2.26e-14 | 46 |
regional part of forebrain | 9.81e-14 | 39 |
forebrain | 9.81e-14 | 39 |
future forebrain | 9.81e-14 | 39 |
gray matter | 3.18e-11 | 34 |
anatomical conduit | 5.99e-10 | 122 |
tube | 9.78e-10 | 114 |
brain grey matter | 1.33e-09 | 29 |
regional part of telencephalon | 1.33e-09 | 29 |
telencephalon | 1.33e-09 | 29 |
embryo | 5.75e-08 | 320 |