FFCP PHASE1:Mm9::chr5:138705241..138705288,-: Difference between revisions
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{{FFCP|EntrezGene=231807|HGNC=|MCL_coexpression_id=247|UniProt=Q3UTZ3,E9Q2V5|association_with_transcript=0bp_to_ENSMUST00000110924,ENSMUST00000159534,ENSMUST00000161604,ENSMUST00000163268,ENSMUST00000170479,NM_153161,uc009afe.2,uc009aff.2_5end|description=CAGE_peak_1_at_BC037034_5end|id=chr5:138705241..138705288,-|ontology_enrichment_celltype=CL:0000540!7.76e-15!33;CL:0000047!7.76e-15!33;CL:0000031!7.76e-15!33;CL:0000404!7.76e-15!33;CL:0000117!1.90e-13!23;CL:0000337!1.90e-13!23;CL:0002319!5.16e-11!43;CL:0000221!7.61e-11!44;CL:0000133!7.61e-11!44;CL:0000393!5.58e-10!39;CL:0000211!5.58e-10!39;CL:0000055!4.02e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,7.76e-15,33;CL:0000047,7.76e-15,33;CL:0000031,7.76e-15,33;CL:0000404,7.76e-15,33;CL:0000117,1.90e-13,23;CL:0000337,1.90e-13,23;CL:0002319,5.16e-11,43;CL:0000221,7.61e-11,44;CL:0000133,7.61e-11,44;CL:0000393,5.58e-10,39;CL:0000211,5.58e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.03e-21!73;UBERON:0005743!4.03e-21!73;UBERON:0000073!1.65e-20!75;UBERON:0001016!1.65e-20!75;UBERON:0001049!2.43e-15!52;UBERON:0005068!2.43e-15!52;UBERON:0006241!2.43e-15!52;UBERON:0007135!2.43e-15!52;UBERON:0002020!1.25e-14!34;UBERON:0000955!6.14e-14!50;UBERON:0006238!6.14e-14!50;UBERON:0002616!1.78e-13!49;UBERON:0004121!5.45e-13!102;UBERON:0000924!5.45e-13!102;UBERON:0006601!5.45e-13!102;UBERON:0007811!8.04e-13!86;UBERON:0002346!1.20e-12!71;UBERON:0003075!1.20e-12!71;UBERON:0007284!1.20e-12!71;UBERON:0000153!1.96e-12!94;UBERON:0002791!7.42e-12!29;UBERON:0003528!7.42e-12!29;UBERON:0001893!7.42e-12!29;UBERON:0003080!1.14e-11!40;UBERON:0002780!2.74e-11!39;UBERON:0001890!2.74e-11!39;UBERON:0006240!2.74e-11!39;UBERON:0000033!2.90e-11!63;UBERON:0003056!3.80e-10!49;UBERON:0000956!3.07e-08!21;UBERON:0001869!3.07e-08!21;UBERON:0000203!3.07e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.03e-21,73;UBERON:0001016,1.65e-20,75;UBERON:0000073,3.34e-16,54;UBERON:0001049,2.43e-15,52;UBERON:0005068,2.43e-15,52;UBERON:0006241,2.43e-15,52;UBERON:0007135,2.43e-15,52;UBERON:0002346,8.91e-15,64;UBERON:0003075,8.91e-15,64;UBERON:0007284,8.91e-15,64;UBERON:0002020,1.25e-14,34;UBERON:0004121,1.47e-14,95;UBERON:0000924,1.47e-14,95;UBERON:0006601,1.47e-14,95;UBERON:0000955,1.08e-12,47;UBERON:0006238,1.08e-12,47;UBERON:0002616,3.06e-12,46;UBERON:0003528,7.42e-12,29;UBERON:0002791,7.42e-12,29;UBERON:0001893,7.42e-12,29;UBERON:0003080,1.14e-11,40;UBERON:0002780,2.74e-11,39;UBERON:0001890,2.74e-11,39;UBERON:0006240,2.74e-11,39;UBERON:0010371,5.27e-11,73;UBERON:0003056,3.80e-10,49;UBERON:0000956,3.07e-08,21;UBERON:0001869,3.07e-08,21;UBERON:0000203,3.07e-08,21|phase1_expression=11.8510146857548,11.1672130444596,9.55498402718026,6.95667686005709,4.50806156951712,9.06548068324205,7.70921713965235,16.7860320474049,5.20918271961167,7.2560003159818,17.1217968225505,17.549874978974,21.4000912414007,20.6312149708834,18.3210368998615,9.71881283471165,14.6907994406911,16.4040325986284,13.8485577941796,19.0975343309114,12.8415368128115,17.5744983625567,15.9331871374751,5.91971964335605,7.79991555628378,10.3361753540704,4.73838195774982,7.54149314400612,6.65081968097309,5.54466285471848,7.98229838359097,16.5107975099504,22.7573971406291,15.8481681015439,8.37669697278696,8.14549762256613,9.59595974433135,51.8979222113766,28.9094077473806,33.5055196143231,60.5878432671945,56.692775251551,54.3771595394892,7.67970589651021,7.40051597902456,5.32285581268876,12.5182615095686,8.72100625521786,6.59058548203415,6.02732687130279,7.27929392451885,7.18762821824858,15.4359997573117,4.35217285206807,9.41062637598899,5.91696702882678,8.02293631828519,7.73508138416164,45.5212036934095,47.609188134483,55.1433321050376,4.74382344896785,10.6715375533337,70.6421278065898,70.2095117422552,83.8366535636398,31.4580116044325,24.2057532352579,30.4847460186924,34.6965261512445,27.552569937031,34.849420097264,23.412065340871,30.6226998037385,31.4373144939815,34.9303138911808,22.0231761998777,20.6853487698004,25.9595041203051,45.2369966914565,43.3651430675422,34.3802824567462,24.8472869111229,16.8828783009504,20.6277634498694,27.4004584490511,26.4811326286331,50.3278503728312,9.16286939331527,11.7891633766585,5.79728977403356,6.0229671388697,5.439770669662,7.01614149129162,6.49776417447669,2.68816132258401,8.84799846830037,4.26075806445144,4.1565760736459,5.65343319216544,11.5491604216878,2.56652954828636,7.64415719119937,28.4426681261332,6.71122227134764,6.84071636782766,8.08839112023653,6.8510327831436,7.50919862576798,11.4300447079915,8.67426633830679,12.7875500891099,10.1470818792666,11.3041980414467,6.23220147819235,8.04266184509923,14.8316980640624,4.62717942143717,22.1152637987469,7.44127509758082,11.2629174414801,15.5160081003271,9.31958806090611,18.737971008739,14.6612694769419,9.19645398750929,5.87094110079009,5.39912457894067,6.22644112658017,21.8694333531041,18.3000241127451,30.7853162676518,22.4233373048037,15.3429274398198,23.0644729461112,18.00878020052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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:231807 | |||
|HGNC= | |||
|MCL_coexpression_id=247 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UTZ3,uniprot:E9Q2V5 | |||
|association_with_transcript=0bp_to_ENSMUST00000110924,ENSMUST00000159534,ENSMUST00000161604,ENSMUST00000163268,ENSMUST00000170479,NM_153161,uc009afe.2,uc009aff.2_5end | |||
|cluster_id=chr5:138705241..138705288,- | |||
|description=CAGE_peak_1_at_BC037034_5end | |||
|id=chr5:138705241..138705288,- | |||
|ontology_enrichment_celltype=CL:0000540!7.76e-15!33;CL:0000047!7.76e-15!33;CL:0000031!7.76e-15!33;CL:0000404!7.76e-15!33;CL:0000117!1.90e-13!23;CL:0000337!1.90e-13!23;CL:0002319!5.16e-11!43;CL:0000221!7.61e-11!44;CL:0000133!7.61e-11!44;CL:0000393!5.58e-10!39;CL:0000211!5.58e-10!39;CL:0000055!4.02e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.76e-15,33;CL:0000047,7.76e-15,33;CL:0000031,7.76e-15,33;CL:0000404,7.76e-15,33;CL:0000117,1.90e-13,23;CL:0000337,1.90e-13,23;CL:0002319,5.16e-11,43;CL:0000221,7.61e-11,44;CL:0000133,7.61e-11,44;CL:0000393,5.58e-10,39;CL:0000211,5.58e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.03e-21!73;UBERON:0005743!4.03e-21!73;UBERON:0000073!1.65e-20!75;UBERON:0001016!1.65e-20!75;UBERON:0001049!2.43e-15!52;UBERON:0005068!2.43e-15!52;UBERON:0006241!2.43e-15!52;UBERON:0007135!2.43e-15!52;UBERON:0002020!1.25e-14!34;UBERON:0000955!6.14e-14!50;UBERON:0006238!6.14e-14!50;UBERON:0002616!1.78e-13!49;UBERON:0004121!5.45e-13!102;UBERON:0000924!5.45e-13!102;UBERON:0006601!5.45e-13!102;UBERON:0007811!8.04e-13!86;UBERON:0002346!1.20e-12!71;UBERON:0003075!1.20e-12!71;UBERON:0007284!1.20e-12!71;UBERON:0000153!1.96e-12!94;UBERON:0002791!7.42e-12!29;UBERON:0003528!7.42e-12!29;UBERON:0001893!7.42e-12!29;UBERON:0003080!1.14e-11!40;UBERON:0002780!2.74e-11!39;UBERON:0001890!2.74e-11!39;UBERON:0006240!2.74e-11!39;UBERON:0000033!2.90e-11!63;UBERON:0003056!3.80e-10!49;UBERON:0000956!3.07e-08!21;UBERON:0001869!3.07e-08!21;UBERON:0000203!3.07e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.03e-21,73;UBERON:0001016,1.65e-20,75;UBERON:0000073,3.34e-16,54;UBERON:0001049,2.43e-15,52;UBERON:0005068,2.43e-15,52;UBERON:0006241,2.43e-15,52;UBERON:0007135,2.43e-15,52;UBERON:0002346,8.91e-15,64;UBERON:0003075,8.91e-15,64;UBERON:0007284,8.91e-15,64;UBERON:0002020,1.25e-14,34;UBERON:0004121,1.47e-14,95;UBERON:0000924,1.47e-14,95;UBERON:0006601,1.47e-14,95;UBERON:0000955,1.08e-12,47;UBERON:0006238,1.08e-12,47;UBERON:0002616,3.06e-12,46;UBERON:0003528,7.42e-12,29;UBERON:0002791,7.42e-12,29;UBERON:0001893,7.42e-12,29;UBERON:0003080,1.14e-11,40;UBERON:0002780,2.74e-11,39;UBERON:0001890,2.74e-11,39;UBERON:0006240,2.74e-11,39;UBERON:0010371,5.27e-11,73;UBERON:0003056,3.80e-10,49;UBERON:0000956,3.07e-08,21;UBERON:0001869,3.07e-08,21;UBERON:0000203,3.07e-08,21 | |||
|phase1_expression=11.8510146857548,11.1672130444596,9.55498402718026,6.95667686005709,4.50806156951712,9.06548068324205,7.70921713965235,16.7860320474049,5.20918271961167,7.2560003159818,17.1217968225505,17.549874978974,21.4000912414007,20.6312149708834,18.3210368998615,9.71881283471165,14.6907994406911,16.4040325986284,13.8485577941796,19.0975343309114,12.8415368128115,17.5744983625567,15.9331871374751,5.91971964335605,7.79991555628378,10.3361753540704,4.73838195774982,7.54149314400612,6.65081968097309,5.54466285471848,7.98229838359097,16.5107975099504,22.7573971406291,15.8481681015439,8.37669697278696,8.14549762256613,9.59595974433135,51.8979222113766,28.9094077473806,33.5055196143231,60.5878432671945,56.692775251551,54.3771595394892,7.67970589651021,7.40051597902456,5.32285581268876,12.5182615095686,8.72100625521786,6.59058548203415,6.02732687130279,7.27929392451885,7.18762821824858,15.4359997573117,4.35217285206807,9.41062637598899,5.91696702882678,8.02293631828519,7.73508138416164,45.5212036934095,47.609188134483,55.1433321050376,4.74382344896785,10.6715375533337,70.6421278065898,70.2095117422552,83.8366535636398,31.4580116044325,24.2057532352579,30.4847460186924,34.6965261512445,27.552569937031,34.849420097264,23.412065340871,30.6226998037385,31.4373144939815,34.9303138911808,22.0231761998777,20.6853487698004,25.9595041203051,45.2369966914565,43.3651430675422,34.3802824567462,24.8472869111229,16.8828783009504,20.6277634498694,27.4004584490511,26.4811326286331,50.3278503728312,9.16286939331527,11.7891633766585,5.79728977403356,6.0229671388697,5.439770669662,7.01614149129162,6.49776417447669,2.68816132258401,8.84799846830037,4.26075806445144,4.1565760736459,5.65343319216544,11.5491604216878,2.56652954828636,7.64415719119937,28.4426681261332,6.71122227134764,6.84071636782766,8.08839112023653,6.8510327831436,7.50919862576798,11.4300447079915,8.67426633830679,12.7875500891099,10.1470818792666,11.3041980414467,6.23220147819235,8.04266184509923,14.8316980640624,4.62717942143717,22.1152637987469,7.44127509758082,11.2629174414801,15.5160081003271,9.31958806090611,18.737971008739,14.6612694769419,9.19645398750929,5.87094110079009,5.39912457894067,6.22644112658017,21.8694333531041,18.3000241127451,30.7853162676518,22.4233373048037,15.3429274398198,23.0644729461112,18.0087802005211,8.86002465497752,15.7996852674818,26.0304441186685,5.6819301089348,12.4915625244196,11.4951052216736,13.8647839950119,15.2211866014072,11.6342413548771,10.7615525039274,13.493048336601,10.3481348295606,12.0718076042392,14.7502742530899,14.4279921814438,15.7820927347854,11.6779844674751,13.9300866608867,6.37924622864625,14.3304672109315,4.21327912387941,8.23513302767089,6.81992398549422,10.9776659443816,11.4917769390737,8.4629168886677,12.5474709860161,10.6252685143598,7.86762275725629,7.20855228726264,6.70683503499048,3.50296027101508,5.75959474697182,3.94001913789829,3.24275238183423,2.48539978623065,3.95190207523891,2.41571553768669,21.449574753541,23.9767746843733,7.26921322564356,8.19796756656987,14.5036010363959,12.5407802804637,13.6599509001419,13.3111126251406,11.5636582799333,11.223311940641,13.2868137232463,7.08205505313247,11.3100843960121,10.1467800740987,10.7230247915516,8.08937467788799,6.70027954611552,7.56736838366595,14.9837641752935,10.0538691096561,19.1603150644237,11.4044743593376,14.3524840504043,7.29412526859313,9.10606134589305,3.69025369949005,7.22194148070324,4.19550357334122,4.44678940630723,14.181833985868,19.6558995113203,14.1663130802458,13.9973483758067,16.1588697034119,11.7127891819453,11.7955416354832,8.91743747262695,7.4131581560782,4.31304619582064,5.95425516269605,6.86482880852033,3.78868316920668,5.20252499213545,6.27176577772377,7.7596339869974,10.0430448238357,9.4519686336375,9.67546988918572,8.91822943496308,8.87783164441623,5.71304738126433,9.56154874503214,7.09358148477859,5.3151525515706,5.42146213435456,5.89907932976657,8.28887912956299,5.78596234326046,18.0949540727127,25.0196614556606,8.85175691434265,8.55403913544671,22.1559814183153,21.332526959781,2.78689407140348,2.7771801992481,16.0909191902291,19.1314984705353,23.4811503528751,16.4888470587261,21.8342700600746,25.1938112402061,14.9779959619711,15.4895604692995,11.4633455604492,23.7777774152137,10.5035663054119,13.5329858787114,8.79589580509311,10.8880281161873,18.5843193675948,8.98288353773431,12.09294227859,9.24164890803901,13.2885851796348,12.2974059177571,7.75284879504663,6.90714086007261,6.06045543254026,11.6933600436252,13.7044191147498,11.3449097573006,12.2558258071364,13.1444598642856,17.5927809944546,14.5749183821483,15.0739198595933,12.664186049747,9.54384319492302,6.69822888052118,12.6722722354404,9.32061111800809,10.8058915046931,7.09010887648364,5.00539722757307,7.90099316558842,7.63983001620073,7.05805868903763,7.57850175237612,22.4364615432717,19.1375386493595,10.5257302661243,15.9267293537952,14.5043711893612,14.4895881384287,13.9554685655979,2.37969801991397,3.91864066506242,2.21119958087078,10.5013767981662,16.13313567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| |||
|short_description=p1@BC037034 | |||
}} |
Revision as of 22:25, 3 August 2015
Short description: | p1@BC037034 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BC037034_5end |
Coexpression cluster: | MCL_coexpression_mm9:247 |
Association with transcript: | 0bp_to_ENSMUST00000110924, ENSMUST00000159534, ENSMUST00000161604, ENSMUST00000163268, ENSMUST00000170479, NM_153161, uc009afe.2, uc009aff.2_5end |
EntrezGene: | 231807 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.76e-15 | 33 |
neuronal stem cell | 7.76e-15 | 33 |
neuroblast | 7.76e-15 | 33 |
electrically signaling cell | 7.76e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.90e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.90e-13 | 23 |
neural cell | 5.16e-11 | 43 |
ectodermal cell | 7.61e-11 | 44 |
neurectodermal cell | 7.61e-11 | 44 |
electrically responsive cell | 5.58e-10 | 39 |
electrically active cell | 5.58e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.03e-21 | 73 |
nervous system | 1.65e-20 | 75 |
regional part of nervous system | 3.34e-16 | 54 |
neural tube | 2.43e-15 | 52 |
neural rod | 2.43e-15 | 52 |
future spinal cord | 2.43e-15 | 52 |
neural keel | 2.43e-15 | 52 |
neurectoderm | 8.91e-15 | 64 |
neural plate | 8.91e-15 | 64 |
presumptive neural plate | 8.91e-15 | 64 |
gray matter | 1.25e-14 | 34 |
ectoderm-derived structure | 1.47e-14 | 95 |
ectoderm | 1.47e-14 | 95 |
presumptive ectoderm | 1.47e-14 | 95 |
brain | 1.08e-12 | 47 |
future brain | 1.08e-12 | 47 |
regional part of brain | 3.06e-12 | 46 |
brain grey matter | 7.42e-12 | 29 |
regional part of telencephalon | 7.42e-12 | 29 |
telencephalon | 7.42e-12 | 29 |
anterior neural tube | 1.14e-11 | 40 |
regional part of forebrain | 2.74e-11 | 39 |
forebrain | 2.74e-11 | 39 |
future forebrain | 2.74e-11 | 39 |
ecto-epithelium | 5.27e-11 | 73 |
pre-chordal neural plate | 3.80e-10 | 49 |
cerebral cortex | 3.07e-08 | 21 |
cerebral hemisphere | 3.07e-08 | 21 |
pallium | 3.07e-08 | 21 |